Clone Sequence Records
BO10285.3prime Sequence
901 bp (753 high quality bases) assembled on 2006-04-19
> BO10285.3prime
ATGGTCTAGAAAGCTTGCCTTCATAATACTAGAAAGGCTGGTGTAACCAC
TGTTGGGCTGGGCGGGCTCCTGATGCCGACCGCACCGTCCACAGCAGCAA
ATGCTCTTCACCACGTCAAGGAAGCTCGTCTGGTCGAAGTCGTCCAGGTC
GGTCATGAAGACACCAGAACTAATGTCCTCTGCAGTGCGCGTTCCGACAA
ATGCCTTGAGATCGGTGGTGGGAAAGCCATCCTTGTAATACGCCTTTATC
GTGTCGTAGGCATCCATTATGACGGCAATGAACAGCGACAGGACCACATA
AATGTACAAGGATATGAACGAGTACAAGTAGATCTGGCAGAACCACCACA
GCCAGGTGGCCTTGCTGGAAAGCGTGGCAAAGGTGGCGAACATATCATCA
CCGTTTATCAGCGCAAACAAGCACTCTGACGTTGTAGCCAGCGATCGGAA
CTTCATGTGATAGGGTCCCAAGATCAGCCAGCCGCAAAACACAAATCCAG
CATAGATCAGCAAGGCGGCGATAAGGAAGCGCAGAATCTTTGGTGCCGCC
TTTTTCAGCGTCAGTATCACAACGTTGTAGGTTTTGAAGAAGCCGAGGTA
GCGCAGCACTCCGAACCAAACAAGCAGGTTGCCAATTCCCAGAAAAAGCG
AGCAGGTATCCCATTGGTCCACCACCAAGTACCTTCCCTCGATTTGCTCT
TTTAGAGCTGATCCAATGATCAAAAGGACGTCATTGAAAATGATCATGAT
GTACCAAAAGTTAACGAATTCCAGTCGGCCGTCAAAGCTCAGCTCCTTGC
CGAATTGCGAACGGAAAAAAGTGACAGTTGTACATCTCAGCAGATATGCT
CTCCACAGAGCCCTTGTACAGAGTGCAAAGGATAGTGCGCATGTTAGTAG
G
BO10285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8743-PA | 1959 | CG8743-RA | 1074..1956 | 901..19 | 4365 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 1334..2216 | 901..19 | 4385 | 99.8 | Minus |
| CG42638-RA | 3070 | CG42638-RA | 1334..2216 | 901..19 | 4385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19715272..19716008 | 19..755 | 3685 | 100 | Plus |
| 3L | 28110227 | 3L | 19746688..19747424 | 19..755 | 3685 | 100 | Plus |
| 3L | 28110227 | 3L | 19747562..19747710 | 753..901 | 715 | 98.7 | Plus |
| 3L | 28110227 | 3L | 19716146..19716294 | 753..901 | 715 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:10 has no hits.
BO10285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:20 Download gff for
BO10285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1074..1959 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:40 Download gff for
BO10285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1074..1959 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:20:43 Download gff for
BO10285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 1334..2221 | 12..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:58 Download gff for
BO10285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 1334..2221 | 12..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:58 Download gff for
BO10285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19716148..19716294 | 755..901 | 98 | | Plus |
| 3L | 19715267..19716007 | 12..754 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:20:43 Download gff for
BO10285.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19708367..19709107 | 12..754 | 99 | <- | Plus |
| arm_3L | 19709248..19709394 | 755..901 | 98 | | Plus |
BO10285.5prime Sequence
893 bp (754 high quality bases) assembled on 2006-04-19
> BO10285.5prime
GAAGTTATCAGTCGACATGCAGAGCTACGGCCCCGGAGCCCAGACAGCTC
CGGCCGTCAAGCGCCGCACGGACAGCTACGAGGCTGCCCAGCAACAGCAG
CAGTCGCCGGAGAGCGACGAGGAGTACGTGAACACCAGGATACTGCGGCG
CCAAGTGCAGCTGCAGTCCACTCCGGTGGCCCCGGTGGTGCCCATGCCCA
TATCCGCCGGTAGTGGCACTGCCCCACCCTCCGTGGATGGCCGCGAGGAG
CAGCCCGAATTCCCCGGATCCTCGGCTGCATCTTACCAGGAGGAGCGAAT
GCGCAGGAAGCTTCAGTTCTTCTTTATGAACCCCATTGAGAAATGGCAGG
CCAAGCGGAAATTTCCGTACAAGTTCGTTGTGCAGATTGTAAAAATCTTT
CTGGTGACGATGCAATTGTGCCTTTTTGCCCACTCGCGGTATAACCACAT
CAACTACACGGGTGATAACCGATTTGCCTTCTCACATCTATTCCTGCGCG
GCTGGGATTCTTCCCGGGAGGTGGAGAGTTATCCGCCTGCTGTGGGTCCC
TTTGCTCTATACCTCAAATCGGAGTTCTTCGACACTGTGCAGTATGCAGT
CAATGGCTACGCGAATGTAAGCCGATCTATTGGACCATACGACTACCCGA
CGCCCAATAACACAATGCCGCCACTAAAGCTTTGCCTGCAGAACTATAGA
GAGGGCACCATATTTGGCTTTAATGAGTCCTACATTTTCGATCCACATAT
CGACGAGGTGTGTGAGCGACTACCTCCGAACGTAACCACCATTGGGGTGG
AGAATTACCTCAGGCAGCGCGATGTGGAGGTCAATTTTGCATCTCTTGTC
TCCGCACAGTTGACGTTCAAGATAAAGACGGTTAATTTCAAGG
BO10285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8743-PA | 1959 | CG8743-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 256..1137 | 12..893 | 4395 | 99.9 | Plus |
| CG42638-RA | 3070 | CG42638-RA | 256..1137 | 12..893 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19716491..19717000 | 893..384 | 2550 | 100 | Minus |
| 3L | 28110227 | 3L | 19747907..19748416 | 893..384 | 2550 | 100 | Minus |
| 3L | 28110227 | 3L | 19717700..19718073 | 385..12 | 1855 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19749116..19749489 | 385..12 | 1855 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:31:37 has no hits.
BO10285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:21 Download gff for
BO10285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:42 Download gff for
BO10285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:59:45 Download gff for
BO10285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 250..1137 | 3..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:25 Download gff for
BO10285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 250..1137 | 3..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:25 Download gff for
BO10285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19716491..19716998 | 386..893 | 100 | <- | Minus |
| 3L | 19717700..19718079 | 3..385 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:59:45 Download gff for
BO10285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19709591..19710098 | 386..893 | 100 | <- | Minus |
| arm_3L | 19710800..19711179 | 3..385 | 98 | | Minus |
BO10285.complete Sequence
1990 bp (1990 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631698
> BO10285.complete
GAAGTTATCAGTCGACATGCAGAGCTACGGCCCCGGAGCCCAGACAGCTC
CGGCCGTCAAGCGCCGCACGGACAGCTACGAGGCTGCCCAGCAACAGCAG
CAGTCGCCGGAGAGCGACGAGGAGTACGTGAACACCAGGATACTGCGGCG
CCAAGTGCAGCTGCAGTCCACTCCGGTGGCCCCGGTGGTGCCCATGCCCA
TATCCGCCGGTAGTGGCACTGCCCCACCCTCCGTGGATGGCCGCGAGGAG
CAGCCCGAATTCCCCGGATCCTCGGCTGCATCTTACCAGGAGGAGCGAAT
GCGCAGGAAGCTTCAGTTCTTCTTTATGAACCCCATTGAGAAATGGCAGG
CCAAGCGGAAATTTCCGTACAAGTTCGTTGTGCAGATTGTAAAAATCTTT
CTGGTGACGATGCAATTGTGCCTTTTTGCCCACTCGCGGTATAACCACAT
CAACTACACGGGTGATAACCGATTTGCCTTCTCACATCTATTCCTGCGCG
GCTGGGATTCTTCCCGGGAGGTGGAGAGTTATCCGCCTGCTGTGGGTCCC
TTTGCTCTATACCTCAAATCGGAGTTCTTCGACACTGTGCAGTATGCAGT
CAATGGCTACGCGAATGTAAGCCGATCTATTGGACCATACGACTACCCGA
CGCCCAATAACACAATGCCGCCACTAAAGCTTTGCCTGCAGAACTATAGA
GAGGGCACCATATTTGGCTTTAATGAGTCCTACATTTTCGATCCACATAT
CGACGAGGTGTGTGAGCGACTACCTCCGAACGTAACCACCATTGGGGTGG
AGAATTACCTCAGGCAGCGCGATGTGGAGGTCAATTTTGCATCTCTTGTC
TCCGCACAGTTGACGTTCAAGATAAAGACGGTTAATTTCAAGGCAAATGG
TGGACCTCTTTCTGCTCCTGATTGTTTTCGGTTTGACATTTCCATAACGT
TTAACAACCGAGACCATGACGGGCAAATGCTGCTCTCACTGGATGCGGAG
GCGACGCGGCTGAAGTGCCACGGAGCAACGGACTTCATATCAGACGCCAA
TTTCGATTCCATGCTGCGAAGCGTACTCAATATATTCGTCCTACTAACAT
GCGCACTATCCTTTGCACTCTGTACAAGGGCTCTGTGGAGAGCATATCTG
CTGAGATGTACAACTGTCAACTTTTTCCGTTCGCAATTCGGCAAGGAGCT
GAGCTTTGACGGCCGACTGGAATTCGTTAACTTTTGGTACATCATGATCA
TTTTCAATGACGTCCTTTTGATCATTGGATCAGCTCTAAAAGAGCAAATC
GAGGGAAGGTACTTGGTGGTGGACCAATGGGATACCTGCTCGCTTTTTCT
GGGAATTGGCAACCTGCTTGTTTGGTTCGGAGTGCTGCGCTACCTCGGCT
TCTTCAAAACCTACAACGTTGTGATACTGACGCTGAAAAAGGCGGCACCA
AAGATTCTGCGCTTCCTTATCGCCGCCTTGCTGATCTATGCTGGATTTGT
GTTTTGCGGCTGGCTGATCTTGGGACCCTATCACATGAAGTTCCGATCGC
TGGCTACAACGTCAGAGTGCTTGTTTGCGCTGATAAACGGTGATGATATG
TTCGCCACCTTTGCCACGCTTTCCAGCAAGGCCACCTGGCTGTGGTGGTT
CTGCCAGATCTACTTGTACTCGTTCATATCCTTGTACATTTATGTGGTCC
TGTCGCTGTTCATTGCCGTCATAATGGATGCCTACGACACGATAAAGGCG
TATTACAAGGATGGCTTTCCCACCACCGATCTCAAGGCATTTGTCGGAAC
GCGCACTGCAGAGGACATTAGTTCTGGTGTCTTCATGACCGACCTGGACG
ACTTCGACCAGACGAGCTTCCTTGACGTGGTGAAGAGCATTTGCTGCTGT
GGACGGTGCGGTCGGCATCAGGAGCCCGCCCAGCCCAACAGTGGTTACAC
CAGCCTTTCTAGTATTATGAAGGCAAGCTTTCTAGACCAT
BO10285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 1959 | CG8743-PA | 1..1956 | 17..1972 | 9765 | 99.9 | Plus |
| CG42638-RA | 1959 | CG42638-PA | 1..1956 | 17..1972 | 9765 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 256..2216 | 12..1972 | 9775 | 99.9 | Plus |
| CG42638-RA | 3070 | CG42638-RA | 256..2216 | 12..1972 | 9775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19716146..19717000 | 1238..384 | 4260 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19747562..19748416 | 1238..384 | 4260 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19715272..19716008 | 1972..1236 | 3685 | 100 | Minus |
| 3L | 28110227 | 3L | 19746688..19747424 | 1972..1236 | 3685 | 100 | Minus |
| 3L | 28110227 | 3L | 19717700..19718073 | 385..12 | 1855 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19749116..19749489 | 385..12 | 1855 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:17:26 has no hits.
BO10285.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:26 Download gff for
BO10285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-RA | 1..1959 | 17..1976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:14:49 Download gff for
BO10285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-RA | 272..2243 | 3..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:21:19 Download gff for
BO10285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 261..2216 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:26 Download gff for
BO10285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-RA | 272..2243 | 3..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:01 Download gff for
BO10285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 261..2216 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:01 Download gff for
BO10285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19715270..19716007 | 1237..1974 | 99 | <- | Minus |
| 3L | 19716148..19716998 | 386..1236 | 99 | <- | Minus |
| 3L | 19717700..19718068 | 17..385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:21:19 Download gff for
BO10285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19708370..19709107 | 1237..1974 | 99 | <- | Minus |
| arm_3L | 19709248..19710098 | 386..1236 | 99 | <- | Minus |
| arm_3L | 19710800..19711168 | 17..385 | 100 | | Minus |
BO10285.pep Sequence
Translation from 16 to 1990
> BO10285.pep
MQSYGPGAQTAPAVKRRTDSYEAAQQQQQSPESDEEYVNTRILRRQVQLQ
STPVAPVVPMPISAGSGTAPPSVDGREEQPEFPGSSAASYQEERMRRKLQ
FFFMNPIEKWQAKRKFPYKFVVQIVKIFLVTMQLCLFAHSRYNHINYTGD
NRFAFSHLFLRGWDSSREVESYPPAVGPFALYLKSEFFDTVQYAVNGYAN
VSRSIGPYDYPTPNNTMPPLKLCLQNYREGTIFGFNESYIFDPHIDEVCE
RLPPNVTTIGVENYLRQRDVEVNFASLVSAQLTFKIKTVNFKANGGPLSA
PDCFRFDISITFNNRDHDGQMLLSLDAEATRLKCHGATDFISDANFDSML
RSVLNIFVLLTCALSFALCTRALWRAYLLRCTTVNFFRSQFGKELSFDGR
LEFVNFWYIMIIFNDVLLIIGSALKEQIEGRYLVVDQWDTCSLFLGIGNL
LVWFGVLRYLGFFKTYNVVILTLKKAAPKILRFLIAALLIYAGFVFCGWL
ILGPYHMKFRSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIYL
YSFISLYIYVVLSLFIAVIMDAYDTIKAYYKDGFPTTDLKAFVGTRTAED
ISSGVFMTDLDDFDQTSFLDVVKSICCCGRCGRHQEPAQPNSGYTSLSSI
MKASFLDH
BO10285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-PA | 652 | CG8743-PA | 1..652 | 1..652 | 3444 | 100 | Plus |
| CG42638-PA | 652 | CG42638-PA | 1..652 | 1..652 | 3444 | 100 | Plus |
