Clone BO10286 Report

Search the DGRC for BO10286

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG14767-RA
Protein status:BO10286.pep: validated full length
Sequenced Size:1318

Clone Sequence Records

BO10286.3prime Sequence

936 bp (834 high quality bases) assembled on 2006-04-19

> BO10286.3prime
ATGGTCTAGAAAGCTTGCAGCCTGGCTTTCGTCGCGTCCGCCGAATACTT
GTCCCGGGATGTTTGGCTGGCGATGCAGCGGCGATTGCGATGGCACTTGC
ACCTGGGCATCGGCAACGTCGTTGTAGGGCGGAGGAGGCGGAATGCCACC
GATTACATCAACGCCAGCGTCAATAACCTCCAAATCGTCCGCTTCCTCGT
CGACATTAGCGTTTACAGCTGCATCGCTGCGGCGCATTGGTGGCGTATTG
GCATTGACATGCATAGTGTTGTTATTGTTCGGCTGATCATTGTTATTATC
CATGTTGTCATCCGTGTTGGAGGCTACGTTCGCGGTAGTGGCTGCTCCAA
GGGCCACGAAGAGAGGGGCCACCGAAGGATTAACCTCCGCACCTCCAACA
GCTGCGTCTTCACCCTCTTCGTAGTTTGACATGGCCACCTGATAAGATGG
CGGTGGTGCCTGCTTCAAGTACTGGGCAATCGCTTCATCGTAATTGGGCA
ACAGAGTGGAGTAAGACCGCTCTTCGGCACCAAAGGTTCCGCCAACACTG
TGGACTCCAGTCGGTGGCTCCAGGAAGGGGAACAGGGTGCGAACGTGTTG
CTGACGGAGCGTCAAGTACTTGTAGCAGCGCCAAACGATACCAATGCAAT
AGGCCTTTAGAAACACAATGCAGATGAATACGACCAGGACAACAACAACT
AGCTCCTCAGGTGGTAGTTCTAGCAGCTTCTCGCGCCACGGCAAGCGATG
CGACTCGGCAATGATGCTGTGAATGGCCTGCAGGTAGCACAGATATCCAG
CGGCGGTGAGAGTTGTAATAGCGAAATCAAACAATTGCAAACAGAAGAAC
GGCAACAGGTGGGAGGGTTTTCCCTTGATGGNTCCGTAGATCATCATCAG
TGTAATGGCTATCATGCAGGTGCACACCAGTCCGCC

BO10286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-PA 1287 CG14767-RA 367..1284 936..19 4571 99.8 Minus
CG14767-PC 1299 CG14767-RC 379..1296 936..19 4571 99.8 Minus
CG14767-PB 1299 CG14767-RB 379..1296 936..19 4571 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-RB 2043 CG14767-RB 446..1363 936..19 4579 99.9 Minus
CG14767-RC 2132 CG14767-RC 535..1452 936..19 4579 99.9 Minus
CG14767-RA 2120 CG14767-RA 523..1440 936..19 4579 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8718697..8719489 19..811 3965 100 Plus
2R 25286936 2R 8719646..8719770 812..936 614 99.2 Plus
Blast to na_te.dros performed 2015-02-10 19:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 17..72 299..244 109 66.1 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7055..7110 299..244 109 66.1 Minus

BO10286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:22 Download gff for BO10286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-PC 379..1299 15..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:43 Download gff for BO10286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-PB 379..1299 15..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:34:25 Download gff for BO10286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 523..1443 15..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:04 Download gff for BO10286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 523..1443 15..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:04 Download gff for BO10286.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8719646..8719770 812..936 99   Plus
2R 8718693..8719489 15..811 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:34:25 Download gff for BO10286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4606198..4606994 15..811 99 <- Plus
arm_2R 4607151..4607275 812..936 99   Plus

BO10286.5prime Sequence

857 bp (855 high quality bases) assembled on 2006-04-19

> BO10286.5prime
GAAGTTATCAGTCGACATGTTTAGGATCCACCTCAAGATGGGTCCCCAAC
GCAACCAGCTCCACAGCAACAACAACAATGGTGCCGCCGGAAGTAGCAGC
AGCACCGGAAACCGTCACCTGAAGGAGTTCACCTGCTGCTTCGGCCTGCA
TGTCCACACGGCCACTTTGATGATCGGATTGTGGCACCTGTTCTTGAACA
TATTGGCGCTAAGCGTTCTAGCGGTCATATGGCGCAATCCGGAGATGATG
GACGAACTGGAAGGTGGCACCCACGACTACACCGTGGATCTGAGTGCACC
GGCCCTACCCACGCCCCTTAGCAAGGTCGAACCGCCCTACGCCTACCGTG
ACCACTCCCTCAACTATCAGAACTTCGATATGGGCGGACTGGTGTGCACC
TGCATGATAGCCATTACACTGATGATGATCTACGGAACCATCAAGGGAAA
ACCCTCCCACCTGTTGCCGTTCTTCTGTTTGCAATTGTTTGATTTCGCTA
TTACAACTCTCACCGCCGCTGGATATCTGTGCTACCTGCAGGCCATTCAC
AGCATCATTGCCGAGTCGCATCGCTTGCCGTGGCGCGAGAAGCTGCTAGA
ACTACCACCTGAGGAGCTAGTTGTTGTTGTCCTGGTCGTATTCATCTGCA
TTGTGTTTCTAAAGGCCTATTGCATTGGTATCGTTTGGCGCTGCTACAAG
TACTTGACGCTCCGTCAGCAACACGTTCGCACCCTGTTCCCCTTCCTGGA
GCCACCGACTGGAGTCCACAGTGTTGGCGGAACCTTTGGTGCCGAAGAGC
GGTCTTACTCCACTCTGTTGCCCAATTACGATGAAGCGATTGCCCAGTAC
TTGAAGC

BO10286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-PA 1287 CG14767-RA 1..841 17..857 4205 100 Plus
CG14767-PC 1299 CG14767-RC 364..853 368..857 2450 100 Plus
CG14767-PB 1299 CG14767-RB 364..853 368..857 2450 100 Plus
CG14767-PC 1299 CG14767-RC 1..352 17..368 1760 100 Plus
CG14767-PB 1299 CG14767-RB 1..352 17..368 1760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-RA 2120 CG14767-RA 157..997 17..857 4205 100 Plus
CG14767-RB 2043 CG14767-RB 68..920 17..857 4075 98.6 Plus
CG14767-RC 2132 CG14767-RC 157..1009 17..857 4075 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8719140..8719489 857..508 1750 100 Minus
2R 25286936 2R 8719855..8720033 368..190 895 100 Minus
2R 25286936 2R 8723257..8723430 190..17 870 100 Minus
2R 25286936 2R 8719646..8719784 507..369 695 100 Minus
Blast to na_te.dros performed 2015-02-13 00:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2388 44..118 127 65.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9166..9226 43..102 122 68.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 136..196 43..102 122 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6818..6914 47..139 114 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6839 47..136 110 59.3 Plus

BO10286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:23 Download gff for BO10286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:44 Download gff for BO10286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:59:47 Download gff for BO10286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 157..997 17..857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:27 Download gff for BO10286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 157..997 17..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:27 Download gff for BO10286.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8723257..8723430 17..190 100   Minus
2R 8719140..8719489 508..857 100 <- Minus
2R 8719646..8719784 369..507 100 <- Minus
2R 8719855..8720032 191..368 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:59:47 Download gff for BO10286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4606645..4606994 508..857 100 <- Minus
arm_2R 4607151..4607289 369..507 100 <- Minus
arm_2R 4607360..4607537 191..368 100 <- Minus
arm_2R 4610762..4610935 17..190 100   Minus

BO10286.complete Sequence

1318 bp (1318 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631699

> BO10286.complete
GAAGTTATCAGTCGACATGTTTAGGATCCACCTCAAGATGGGTCCCCAAC
GCAACCAGCTCCACAGCAACAACAACAATGGTGCCGCCGGAAGTAGCAGC
AGCACCGGAAACCGTCACCTGAAGGAGTTCACCTGCTGCTTCGGCCTGCA
TGTCCACACGGCCACTTTGATGATCGGATTGTGGCACCTGTTCTTGAACA
TATTGGCGCTAAGCGTTCTAGCGGTCATATGGCGCAATCCGGAGATGATG
GACGAACTGGAAGGTGGCACCCACGACTACACCGTGGATCTGAGTGCACC
GGCCCTACCCACGCCCCTTAGCAAGGTCGAACCGCCCTACGCCTACCGTG
ACCACTCCCTCAACTATCAGAACTTCGATATGGGCGGACTGGTGTGCACC
TGCATGATAGCCATTACACTGATGATGATCTACGGAACCATCAAGGGAAA
ACCCTCCCACCTGTTGCCGTTCTTCTGTTTGCAATTGTTTGATTTCGCTA
TTACAACTCTCACCGCCGCTGGATATCTGTGCTACCTGCAGGCCATTCAC
AGCATCATTGCCGAGTCGCATCGCTTGCCGTGGCGCGAGAAGCTGCTAGA
ACTACCACCTGAGGAGCTAGTTGTTGTTGTCCTGGTCGTATTCATCTGCA
TTGTGTTTCTAAAGGCCTATTGCATTGGTATCGTTTGGCGCTGCTACAAG
TACTTGACGCTCCGTCAGCAACACGTTCGCACCCTGTTCCCCTTCCTGGA
GCCACCGACTGGAGTCCACAGTGTTGGCGGAACCTTTGGTGCCGAAGAGC
GGTCTTACTCCACTCTGTTGCCCAATTACGATGAAGCGATTGCCCAGTAC
TTGAAGCAGGCACCACCGCCATCTTATCAGGTGGCCATGTCAAACTACGA
AGAGGGTGAAGACGCAGCTGTTGGAGGTGCGGAGGTTAATCCTTCGGTGG
CCCCTCTCTTCGTGGCCCTTGGAGCAGCCACTACCGCGAACGTAGCCTCC
AACACGGATGACAACATGGATAATAACAATGATCAGCCGAACAATAACAA
CACTATGCATGTCAATGCCAATACGCCACCAATGCGCCGCAGCGATGCAG
CTGTAAACGCTAATGTCGACGAGGAAGCGGACGATTTGGAGGTTATTGAC
GCTGGCGTTGATGTAATCGGTGGCATTCCGCCTCCTCCGCCCTACAACGA
CGTTGCCGATGCCCAGGTGCAAGTGCCATCGCAATCGCCGCTGCATCGCC
AGCCAAACATCCCGGGACAAGTATTCGGCGGACGCGACGAAAGCCAGGCT
GCAAGCTTTCTAGACCAT

BO10286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-RA 1287 CG14767-PA 1..1284 17..1300 6420 100 Plus
CG14767-RB 1299 CG14767-PB 1..1296 17..1300 6265 99.1 Plus
CG14767-RC 1299 CG14767-PC 1..1296 17..1300 6265 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-RA 2120 CG14767-RA 157..1440 17..1300 6420 100 Plus
CG14767-RB 2043 CG14767-RB 68..1363 17..1300 6265 99.1 Plus
CG14767-RC 2132 CG14767-RC 157..1452 17..1300 6265 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8718697..8719489 1300..508 3965 100 Minus
2R 25286936 2R 8719855..8720033 368..190 895 100 Minus
2R 25286936 2R 8723257..8723430 190..17 870 100 Minus
2R 25286936 2R 8719646..8719784 507..369 695 100 Minus
Blast to na_te.dros performed 2014-11-28 00:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2388 44..118 127 65.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 136..196 43..102 122 68.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9166..9226 43..102 122 68.9 Plus

BO10286.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:26 Download gff for BO10286.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 1..1287 17..1304 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:11 Download gff for BO10286.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 155..1441 17..1304 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:21 Download gff for BO10286.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 163..1440 23..1302 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:26 Download gff for BO10286.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 155..1441 17..1304 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:44 Download gff for BO10286.complete
Subject Subject Range Query Range Percent Splice Strand
CG14767-RA 163..1440 23..1302 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:44 Download gff for BO10286.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8718695..8719489 508..1302 99 <- Minus
2R 8719646..8719784 369..507 100 <- Minus
2R 8719855..8720032 191..368 100 <- Minus
2R 8723257..8723424 23..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:21 Download gff for BO10286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4606200..4606994 508..1302 99 <- Minus
arm_2R 4607151..4607289 369..507 100 <- Minus
arm_2R 4607360..4607537 191..368 100 <- Minus
arm_2R 4610762..4610929 23..190 100   Minus

BO10286.pep Sequence

Translation from 16 to 1318

> BO10286.pep
MFRIHLKMGPQRNQLHSNNNNGAAGSSSSTGNRHLKEFTCCFGLHVHTAT
LMIGLWHLFLNILALSVLAVIWRNPEMMDELEGGTHDYTVDLSAPALPTP
LSKVEPPYAYRDHSLNYQNFDMGGLVCTCMIAITLMMIYGTIKGKPSHLL
PFFCLQLFDFAITTLTAAGYLCYLQAIHSIIAESHRLPWREKLLELPPEE
LVVVVLVVFICIVFLKAYCIGIVWRCYKYLTLRQQHVRTLFPFLEPPTGV
HSVGGTFGAEERSYSTLLPNYDEAIAQYLKQAPPPSYQVAMSNYEEGEDA
AVGGAEVNPSVAPLFVALGAATTANVASNTDDNMDNNNDQPNNNNTMHVN
ANTPPMRRSDAAVNANVDEEADDLEVIDAGVDVIGGIPPPPPYNDVADAQ
VQVPSQSPLHRQPNIPGQVFGGRDESQAASFLDH

BO10286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14767-PA 428 CG14767-PA 1..428 1..428 2279 100 Plus
CG14767-PB 432 CG14767-PB 1..432 1..428 2264 99.1 Plus
CG14767-PC 432 CG14767-PC 1..432 1..428 2264 99.1 Plus