Clone Sequence Records
BO10287.3prime Sequence
909 bp (851 high quality bases) assembled on 2006-04-19
> BO10287.3prime
ATGGTCTAGAAAGCTTGCTGCCGATGTTTCGTTCGGTTCCATCCAGCCCT
CGCTGTCGTCTTCGCTATCCGAATCCTCGGACTCGGATAATTCGATAGCC
ACACGTCTGGCCAAGATTGAAGCCACATCCAATGGCGCCGCGTTTCGTTC
AATTTCCTTTTGCTCTGACTTTTCAACTTTACGTAGAGTAATACCATCTC
GAATGGCTTTCATCAAGTCGTTGCGTGGGTCATGGAATGGAGGCAGCATC
TTCTTGGGTGCGACAATGTGAGGCACACCATTTTGTTGGCCGGGCTGCTG
CATTTCGCCATTGGCCAGTGATTTGGGAAGAATTTGATGCGGGCGCAGCG
TGTGTTGGTTGCCACTGCCCATGCCTTCCTCGACTGGAGGCGGTGGCGGC
GGCGGTGGTGGCGCGGCATTAGGTGGCGACATCTTAGGCGAGTGCTGATC
TGGAACCGGCGGCGGTGGCGGCAAGTCGCTAAGGGAGTTCAGTTGATTGC
CCGTCATACCGATGCTGTGGAAAGTATTGCTCAGTTGCGTCATGACCATA
TCATTGGCATTCTGGACGCTGTTGGGAGATCCAGCTCCCGACGAACTGTT
CGCCCGGCCAAGCAGTTTGGCCGCCATATGCCCGCTGTTGACTCCGTTCA
TGCCAGACATTGGTGAAATGACGTCTGGAACTGGTGGAGGCGGTGGCAAG
GCATCCCGACTGGTCGACATACTTCTGCCCCTTGTCGGAGTGTTGGCATT
GGAGGCTGTGGGCGTACCACCACCGCTGCCATTCGATGGCGGAGCCGGTG
GCGGCTGCGACGGACGCGGTTTGTTACGCGACGGTGTTCCCGGTCCGTAG
ATGGGCTCCGGCGACATTACTCCCTGTCCAGTTTGGGCGTACAGCGCATG
CGACTGATA
BO10287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4636-PA | 1842 | SCAR-RA | 949..1838 | 909..20 | 4375 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 2833 | CG4636-RE | 1210..2099 | 909..20 | 4405 | 99.7 | Minus |
SCAR-RD | 3118 | CG4636-RD | 1495..2384 | 909..20 | 4405 | 99.7 | Minus |
SCAR-RF | 3037 | CG4636-RF | 1414..2303 | 909..20 | 4405 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10980648..10981112 | 909..445 | 2295 | 99.6 | Minus |
2L | 23513712 | 2L | 10981176..10981431 | 447..192 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 10981486..10981661 | 195..20 | 880 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 897..928 | 412..380 | 108 | 84.8 | Minus |
BO10287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:23 Download gff for
BO10287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-PA | 950..1842 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:46 Download gff for
BO10287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4636-PA | 950..1842 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:48:28 Download gff for
BO10287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RF | 1415..2303 | 20..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:01 Download gff for
BO10287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RF | 1415..2303 | 20..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:01 Download gff for
BO10287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10980649..10981112 | 445..908 | 99 | -> | Minus |
2L | 10981179..10981428 | 195..444 | 99 | -> | Minus |
2L | 10981487..10981664 | 18..194 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:48:28 Download gff for
BO10287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10980649..10981112 | 445..908 | 99 | -> | Minus |
arm_2L | 10981179..10981428 | 195..444 | 99 | -> | Minus |
arm_2L | 10981487..10981664 | 18..194 | 98 | -> | Minus |
BO10287.5prime Sequence
923 bp (756 high quality bases) assembled on 2006-04-19
> BO10287.5prime
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATTGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACC
TACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTTCG
GCACGGCATGGGTGGCCCCCAGC
BO10287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4636-PA | 1842 | SCAR-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 2833 | CG4636-RE | 261..1168 | 16..923 | 4495 | 99.8 | Plus |
SCAR-RA | 2292 | CG4636-RA | 261..1168 | 16..923 | 4495 | 99.8 | Plus |
SCAR-RC | 2914 | CG4636-RC | 261..1009 | 16..764 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10977961..10978706 | 16..761 | 3730 | 100 | Plus |
2L | 23513712 | 2L | 10980445..10980606 | 762..923 | 750 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:25:55 has no hits.
BO10287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:25 Download gff for
BO10287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:47 Download gff for
BO10287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4636-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:43:37 Download gff for
BO10287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 257..1168 | 13..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:12:18 Download gff for
BO10287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 257..1168 | 13..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:18 Download gff for
BO10287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10980445..10980606 | 762..923 | 98 | | Plus |
2L | 10977957..10978706 | 13..761 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:43:37 Download gff for
BO10287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10977957..10978706 | 13..761 | 99 | -> | Plus |
arm_2L | 10980445..10980606 | 762..923 | 98 | | Plus |
BO10287.complete Sequence
1873 bp assembled on 2008-08-14
GenBank Submission: FJ631700
> BO10287.complete
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATTGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACC
TACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTCGG
CAACGGCATGGGTGGCCCCCAGCAGATGCACATGCAGCATCAGCAGATGT
ATGACGCCGGAATGTATCAGTCGCATGCGCTGTACGGCCAAACTGGACAG
GGAGTAATGTCGCCGGAGCCCATCTACGGACCGGGAACACCGTCGCGTAA
CAAACCGCGTCCGTCGCAGCCGCCACCGGCTCCGCCATCGAATGGCAGCG
GTGGTGGTACGCCCACAGCCTCCAATGCCAACACTCCGACAAGGGGCAGA
AGTATGTCGACCAGTCGGGATGCCTTGCCACCGCCTCCACCAGTTCCAGA
CGTCATTTCACCAATGTCTGGCATGAACGGAGTCAACAGCGGGCATATGG
CGGCCAAACTGCTTGGCCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCC
AACAGCGTCCAGAATGCCAATGATATGGTCATGACGCAACTGAGCAATAC
TTTCCACAGCATCGGTATGACGGGCAATCAACTGAACTCCCTTAGCGACT
TGCCGCCACCGCCGCCGGTTCCAGATCAGCACTCGCCTAAGATGTCGCCA
CCTAATGCCGCGCCACCACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGG
CATGGGCAGTGGCAACCAACACACGCTGCGCCCGCATCAAATTCTTCCCA
AATCACTGGCCAATGGCGAAATGCAGCAGCCCGGCCAACAAAATGGTGTG
CCTCACATTGTCGCACCCAAGAAGATGCTGCCTCCATTCCATGACCCACG
CAACGACTTGATGAAAGCCATTCGAGATGGTATTACTCTACGTAAAGTTG
AAAAGTCAGAGCAAAAGGAAATTGAACGAAACGCGGCGCCATTGGATGTG
GCTTCAATCTTGGCCAGACGTGTGGCTATCGAATTATCCGAGTCCGAGGA
TTCGGATAGCGAAGACGACAGCGAGGGCTGGATGGAACCGAACGAAACAT
CGGCAGCAAGCTTTCTAGACCAT
BO10287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 1899 | CG4636-PE | 1..1838 | 17..1854 | 9160 | 99.9 | Plus |
SCAR-RA | 1842 | CG4636-PA | 1..1838 | 17..1854 | 9160 | 99.9 | Plus |
SCAR-RD | 2025 | CG4636-PD | 929..2021 | 762..1854 | 5435 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-RE | 2833 | CG4636-RE | 261..2099 | 16..1854 | 9165 | 99.9 | Plus |
SCAR-RA | 2292 | CG4636-RA | 261..2099 | 16..1854 | 9165 | 99.9 | Plus |
SCAR-RD | 3118 | CG4636-RD | 1292..2384 | 762..1854 | 5435 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10977961..10978706 | 16..761 | 3730 | 100 | Plus |
2L | 23513712 | 2L | 10980445..10981112 | 762..1429 | 3325 | 99.9 | Plus |
2L | 23513712 | 2L | 10981176..10981431 | 1427..1682 | 1265 | 99.6 | Plus |
2L | 23513712 | 2L | 10981486..10981661 | 1679..1854 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:02:48 has no hits.
BO10287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:07 Download gff for
BO10287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 255..2097 | 13..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:59 Download gff for
BO10287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 262..2099 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:28 Download gff for
BO10287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 260..2097 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:36 Download gff for
BO10287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SCAR-RA | 262..2099 | 17..1857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:36 Download gff for
BO10287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10981179..10981428 | 1430..1679 | 99 | -> | Plus |
2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
2L | 10980445..10981112 | 762..1429 | 99 | -> | Plus |
2L | 10981487..10981661 | 1680..1857 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:59 Download gff for
BO10287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
arm_2L | 10980445..10981112 | 762..1429 | 99 | -> | Plus |
arm_2L | 10981179..10981428 | 1430..1679 | 99 | -> | Plus |
arm_2L | 10981487..10981661 | 1680..1857 | 98 | | Plus |
BO10287.pep Sequence
Translation from 16 to 1873
> BO10287.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGNM
GVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGG
PQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGPGTPSRNKPRPS
QPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPM
SGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHSIG
MTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGN
QHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMK
AIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSDSED
DSEGWMEPNETSAASFLDH
BO10287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SCAR-PE | 632 | CG4636-PE | 1..618 | 1..618 | 3251 | 99.4 | Plus |
SCAR-PA | 613 | CG4636-PA | 1..613 | 1..613 | 3245 | 100 | Plus |
SCAR-PC | 640 | CG4636-PC | 1..640 | 1..613 | 3207 | 95.8 | Plus |
SCAR-PB | 641 | CG4636-PB | 1..641 | 1..613 | 3201 | 95.5 | Plus |
SCAR-PF | 647 | CG4636-PF | 1..647 | 1..613 | 3195 | 94.6 | Plus |