Clone BO10287 Report

Search the DGRC for BO10287

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptSCAR-RA
Protein status:BO10287.pep: Imported from assembly
Sequenced Size:1873

Clone Sequence Records

BO10287.3prime Sequence

909 bp (851 high quality bases) assembled on 2006-04-19

> BO10287.3prime
ATGGTCTAGAAAGCTTGCTGCCGATGTTTCGTTCGGTTCCATCCAGCCCT
CGCTGTCGTCTTCGCTATCCGAATCCTCGGACTCGGATAATTCGATAGCC
ACACGTCTGGCCAAGATTGAAGCCACATCCAATGGCGCCGCGTTTCGTTC
AATTTCCTTTTGCTCTGACTTTTCAACTTTACGTAGAGTAATACCATCTC
GAATGGCTTTCATCAAGTCGTTGCGTGGGTCATGGAATGGAGGCAGCATC
TTCTTGGGTGCGACAATGTGAGGCACACCATTTTGTTGGCCGGGCTGCTG
CATTTCGCCATTGGCCAGTGATTTGGGAAGAATTTGATGCGGGCGCAGCG
TGTGTTGGTTGCCACTGCCCATGCCTTCCTCGACTGGAGGCGGTGGCGGC
GGCGGTGGTGGCGCGGCATTAGGTGGCGACATCTTAGGCGAGTGCTGATC
TGGAACCGGCGGCGGTGGCGGCAAGTCGCTAAGGGAGTTCAGTTGATTGC
CCGTCATACCGATGCTGTGGAAAGTATTGCTCAGTTGCGTCATGACCATA
TCATTGGCATTCTGGACGCTGTTGGGAGATCCAGCTCCCGACGAACTGTT
CGCCCGGCCAAGCAGTTTGGCCGCCATATGCCCGCTGTTGACTCCGTTCA
TGCCAGACATTGGTGAAATGACGTCTGGAACTGGTGGAGGCGGTGGCAAG
GCATCCCGACTGGTCGACATACTTCTGCCCCTTGTCGGAGTGTTGGCATT
GGAGGCTGTGGGCGTACCACCACCGCTGCCATTCGATGGCGGAGCCGGTG
GCGGCTGCGACGGACGCGGTTTGTTACGCGACGGTGTTCCCGGTCCGTAG
ATGGGCTCCGGCGACATTACTCCCTGTCCAGTTTGGGCGTACAGCGCATG
CGACTGATA

BO10287.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4636-PA 1842 SCAR-RA 949..1838 909..20 4375 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 2833 CG4636-RE 1210..2099 909..20 4405 99.7 Minus
SCAR-RD 3118 CG4636-RD 1495..2384 909..20 4405 99.7 Minus
SCAR-RF 3037 CG4636-RF 1414..2303 909..20 4405 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10980648..10981112 909..445 2295 99.6 Minus
2L 23513712 2L 10981176..10981431 447..192 1265 99.6 Minus
2L 23513712 2L 10981486..10981661 195..20 880 100 Minus
Blast to na_te.dros performed 2015-02-10 21:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 897..928 412..380 108 84.8 Minus

BO10287.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:23 Download gff for BO10287.3prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-PA 950..1842 16..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:46 Download gff for BO10287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4636-PA 950..1842 16..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:48:28 Download gff for BO10287.3prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RF 1415..2303 20..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:01 Download gff for BO10287.3prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RF 1415..2303 20..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:01 Download gff for BO10287.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10980649..10981112 445..908 99 -> Minus
2L 10981179..10981428 195..444 99 -> Minus
2L 10981487..10981664 18..194 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:48:28 Download gff for BO10287.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10980649..10981112 445..908 99 -> Minus
arm_2L 10981179..10981428 195..444 99 -> Minus
arm_2L 10981487..10981664 18..194 98 -> Minus

BO10287.5prime Sequence

923 bp (756 high quality bases) assembled on 2006-04-19

> BO10287.5prime
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATTGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACC
TACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTTCG
GCACGGCATGGGTGGCCCCCAGC

BO10287.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4636-PA 1842 SCAR-RA 1..881 17..897 4405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 2833 CG4636-RE 261..1168 16..923 4495 99.8 Plus
SCAR-RA 2292 CG4636-RA 261..1168 16..923 4495 99.8 Plus
SCAR-RC 2914 CG4636-RC 261..1009 16..764 3745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977961..10978706 16..761 3730 100 Plus
2L 23513712 2L 10980445..10980606 762..923 750 97.5 Plus
Blast to na_te.dros performed on 2015-02-13 09:25:55 has no hits.

BO10287.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:25 Download gff for BO10287.5prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:47 Download gff for BO10287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4636-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:43:37 Download gff for BO10287.5prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 257..1168 13..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:12:18 Download gff for BO10287.5prime
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 257..1168 13..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:18 Download gff for BO10287.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10980445..10980606 762..923 98   Plus
2L 10977957..10978706 13..761 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:43:37 Download gff for BO10287.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10977957..10978706 13..761 99 -> Plus
arm_2L 10980445..10980606 762..923 98   Plus

BO10287.complete Sequence

1873 bp assembled on 2008-08-14

GenBank Submission: FJ631700

> BO10287.complete
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTAACT
CGATCGAATTGAACCGAAGCTATCAGTCGGAGCAGATCGATGGTAGCACC
TACGAGCAGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCTTCGG
CAACGGCATGGGTGGCCCCCAGCAGATGCACATGCAGCATCAGCAGATGT
ATGACGCCGGAATGTATCAGTCGCATGCGCTGTACGGCCAAACTGGACAG
GGAGTAATGTCGCCGGAGCCCATCTACGGACCGGGAACACCGTCGCGTAA
CAAACCGCGTCCGTCGCAGCCGCCACCGGCTCCGCCATCGAATGGCAGCG
GTGGTGGTACGCCCACAGCCTCCAATGCCAACACTCCGACAAGGGGCAGA
AGTATGTCGACCAGTCGGGATGCCTTGCCACCGCCTCCACCAGTTCCAGA
CGTCATTTCACCAATGTCTGGCATGAACGGAGTCAACAGCGGGCATATGG
CGGCCAAACTGCTTGGCCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCC
AACAGCGTCCAGAATGCCAATGATATGGTCATGACGCAACTGAGCAATAC
TTTCCACAGCATCGGTATGACGGGCAATCAACTGAACTCCCTTAGCGACT
TGCCGCCACCGCCGCCGGTTCCAGATCAGCACTCGCCTAAGATGTCGCCA
CCTAATGCCGCGCCACCACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGG
CATGGGCAGTGGCAACCAACACACGCTGCGCCCGCATCAAATTCTTCCCA
AATCACTGGCCAATGGCGAAATGCAGCAGCCCGGCCAACAAAATGGTGTG
CCTCACATTGTCGCACCCAAGAAGATGCTGCCTCCATTCCATGACCCACG
CAACGACTTGATGAAAGCCATTCGAGATGGTATTACTCTACGTAAAGTTG
AAAAGTCAGAGCAAAAGGAAATTGAACGAAACGCGGCGCCATTGGATGTG
GCTTCAATCTTGGCCAGACGTGTGGCTATCGAATTATCCGAGTCCGAGGA
TTCGGATAGCGAAGACGACAGCGAGGGCTGGATGGAACCGAACGAAACAT
CGGCAGCAAGCTTTCTAGACCAT

BO10287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 1899 CG4636-PE 1..1838 17..1854 9160 99.9 Plus
SCAR-RA 1842 CG4636-PA 1..1838 17..1854 9160 99.9 Plus
SCAR-RD 2025 CG4636-PD 929..2021 762..1854 5435 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-RE 2833 CG4636-RE 261..2099 16..1854 9165 99.9 Plus
SCAR-RA 2292 CG4636-RA 261..2099 16..1854 9165 99.9 Plus
SCAR-RD 3118 CG4636-RD 1292..2384 762..1854 5435 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10977961..10978706 16..761 3730 100 Plus
2L 23513712 2L 10980445..10981112 762..1429 3325 99.9 Plus
2L 23513712 2L 10981176..10981431 1427..1682 1265 99.6 Plus
2L 23513712 2L 10981486..10981661 1679..1854 880 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:02:48 has no hits.

BO10287.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:07 Download gff for BO10287.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 255..2097 13..1854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:59 Download gff for BO10287.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 262..2099 17..1857 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:28 Download gff for BO10287.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 260..2097 17..1857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:36 Download gff for BO10287.complete
Subject Subject Range Query Range Percent Splice Strand
SCAR-RA 262..2099 17..1857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:36 Download gff for BO10287.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10981179..10981428 1430..1679 99 -> Plus
2L 10977962..10978706 17..761 100 -> Plus
2L 10980445..10981112 762..1429 99 -> Plus
2L 10981487..10981661 1680..1857 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:59 Download gff for BO10287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10977962..10978706 17..761 100 -> Plus
arm_2L 10980445..10981112 762..1429 99 -> Plus
arm_2L 10981179..10981428 1430..1679 99 -> Plus
arm_2L 10981487..10981661 1680..1857 98   Plus

BO10287.pep Sequence

Translation from 16 to 1873

> BO10287.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGNM
GVYDTRPPRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGG
PQQMHMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGPGTPSRNKPRPS
QPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPM
SGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHSIG
MTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGN
QHTLRPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMK
AIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSDSED
DSEGWMEPNETSAASFLDH

BO10287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
SCAR-PE 632 CG4636-PE 1..618 1..618 3251 99.4 Plus
SCAR-PA 613 CG4636-PA 1..613 1..613 3245 100 Plus
SCAR-PC 640 CG4636-PC 1..640 1..613 3207 95.8 Plus
SCAR-PB 641 CG4636-PB 1..641 1..613 3201 95.5 Plus
SCAR-PF 647 CG4636-PF 1..647 1..613 3195 94.6 Plus