Clone BO10288 Report

Search the DGRC for BO10288

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG1902-RA
Protein status:BO10288.pep: validated full length
Sequenced Size:970

Clone Sequence Records

BO10288.3prime Sequence

909 bp (786 high quality bases) assembled on 2006-04-19

> BO10288.3prime
ATGGTCTAGAAAGCTTGCATCGAAGTTAATCATTCGGAAGGTTCCGTCGT
TCGGAACGTCGGTTACTAACGGAGCACCCCTTTCCTGATCCTTCTCACTG
GCTTCCCGCAATTTCTCATCCACGCCATATCGCTCGTCTTCCGTGAAGTA
CGGGGAAAAGCTTAGCAGCTGGGTCTCGTAGCGCGTCATTGCATCAGACA
AAGATCCATTATCGCCGCCCATTTCCACGGGTAAATACTCCAATCCAATT
GCCTTTCGCAGAGACGCGACGGTGGAGTGAATGTGCAACAGCTCCTTTTG
CTTCATGACATTCCGAACCAGTCCAAGGACAAACTGCGTCTCCCTGGATG
CATTGACAATGTGCGTGGCCACTAAATTCGCTGGAATTCCATGCTCTAGG
AATGCATTCATCCGCTTGAACATGCCAGGATCGAACTGCAGTAGCAGAGA
GTAGGGTATCTTGGTGAAGTCGATGATCTCCACCACGCCGGCTATGTTCC
AGTTGTCGTCCGTGTTGATCTCGATCTCAGCGCGAAAAGCGTGGAAGCGG
AAAATGTCGCTGACACTGTGCTTGGAAGGTTCAATGTGACCCATTCGTGT
GTAGTGGATGCGGGGGCCACCAGGGCCAATAGGTTTGGGCAATGTGGCGA
ATATTCCTGAACGAGCCAGTTCTATCAGCTTATCGTCCACCTGGCGACCC
TTGAGCAGTTCTCTTTCCTTTGATTTGTAGGTGTAGTAGAAGAGTACCCT
CTTCTTGGCCTCCTCTACGTCCCAGCGGCAGAAGCGCAGAAAGGCCACCA
AGAACTGATCGTCGGTCCGCGCCTCCAGGTAGATCTGTTTGTCGATCCAG
GTCCTTAGCGCCTCGATCTTCGCAACCGTCGAGGACGGATCCTCGCAGAG
CTGCGTTCG

BO10288.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PA 939 CG1902-RA 46..936 909..19 4455 100 Minus
CG1902-PC 939 CG1902-RC 46..936 909..19 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 1782 CG1902-RC 207..1097 909..19 4455 100 Minus
CG1902-RA 1749 CG1902-RA 174..1064 909..19 4455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9604244..9604611 656..289 1840 100 Minus
2R 25286936 2R 9604669..9604939 289..19 1355 100 Minus
2R 25286936 2R 9603927..9604180 909..656 1270 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:03:09 has no hits.

BO10288.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:26 Download gff for BO10288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 46..939 16..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:49 Download gff for BO10288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 46..939 16..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:42:28 Download gff for BO10288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 174..1064 19..909 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:17:54 Download gff for BO10288.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 174..1064 19..909 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:17:54 Download gff for BO10288.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9603927..9604180 656..909 100 -> Minus
2R 9604245..9604611 289..655 100 -> Minus
2R 9604670..9604939 19..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:42:28 Download gff for BO10288.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5491432..5491685 656..909 100 -> Minus
arm_2R 5491750..5492116 289..655 100 -> Minus
arm_2R 5492175..5492444 19..288 100   Minus

BO10288.5prime Sequence

917 bp (776 high quality bases) assembled on 2006-04-19

> BO10288.5prime
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGNCATGACGCGCTACGAGACCC
AGCTGCTAAGCTTTTCCCCGTACTTCACGGANGACGAGCGATATGGCGTG
GATGAGAAATTGCGGGAAAGCAGTGAGAAGGATCAGGAAAGGGGTGCTCC
GTTAGTAACCGACGTTC

BO10288.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PA 939 CG1902-RA 1..901 17..917 4392 99.4 Plus
CG1902-PC 939 CG1902-RC 1..901 17..917 4392 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 1782 CG1902-RC 161..1062 16..917 4443 99.4 Plus
CG1902-RA 1749 CG1902-RA 128..1029 16..917 4443 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9604244..9604611 315..682 1840 100 Plus
2R 25286936 2R 9603881..9604180 16..315 1500 100 Plus
2R 25286936 2R 9604669..9604904 682..917 1113 97.9 Plus
Blast to na_te.dros performed on 2015-02-12 07:03:09 has no hits.

BO10288.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:27 Download gff for BO10288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 1..901 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:50 Download gff for BO10288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-PC 1..901 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:08 Download gff for BO10288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 117..1029 5..917 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:20 Download gff for BO10288.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 117..1029 5..917 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:20 Download gff for BO10288.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9604670..9604904 683..917 97   Plus
2R 9603870..9604180 5..315 98 -> Plus
2R 9604245..9604611 316..682 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:08 Download gff for BO10288.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5491375..5491685 5..315 98 -> Plus
arm_2R 5491750..5492116 316..682 100 -> Plus
arm_2R 5492175..5492409 683..917 97   Plus

BO10288.complete Sequence

970 bp (970 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631701

> BO10288.complete
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCC
AGCTGCTAAGCTTTTCCCCGTACTTCACGGAAGACGAGCGATATGGCGTG
GATGAGAAATTGCGGGAAGCCAGTGAGAAGGATCAGGAAAGGGGTGCTCC
GTTAGTAACCGACGTTCCGAACGACGGAACCTTCCGAATGATTAACTTCG
ATGCAAGCTTTCTAGACCAT

BO10288.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 939 CG1902-PC 1..936 17..952 4680 100 Plus
CG1902-RA 939 CG1902-PA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-RC 1782 CG1902-RC 161..1097 16..952 4685 100 Plus
CG1902-RA 1749 CG1902-RA 128..1064 16..952 4685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9604244..9604611 315..682 1840 100 Plus
2R 25286936 2R 9603881..9604180 16..315 1500 100 Plus
2R 25286936 2R 9604669..9604939 682..952 1355 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:13:05 has no hits.

BO10288.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:11 Download gff for BO10288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 1..939 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:53 Download gff for BO10288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 148..1095 5..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:59 Download gff for BO10288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 129..1064 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:12 Download gff for BO10288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RC 148..1095 5..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:25 Download gff for BO10288.complete
Subject Subject Range Query Range Percent Splice Strand
CG1902-RA 129..1064 17..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:25 Download gff for BO10288.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9603882..9604180 17..315 100 -> Plus
2R 9604245..9604611 316..682 100 -> Plus
2R 9604670..9604939 683..954 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:59 Download gff for BO10288.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5491387..5491685 17..315 100 -> Plus
arm_2R 5491750..5492116 316..682 100 -> Plus
arm_2R 5492175..5492444 683..954 99   Plus

BO10288.pep Sequence

Translation from 16 to 970

> BO10288.pep
MAKIRSLEPELAEVARTQLCEDPSSTVAKIEALRTWIDKQIYLEARTDDQ
FLVAFLRFCRWDVEEAKKRVLFYYTYKSKERELLKGRQVDDKLIELARSG
IFATLPKPIGPGGPRIHYTRMGHIEPSKHSVSDIFRFHAFRAEIEINTDD
NWNIAGVVEIIDFTKIPYSLLLQFDPGMFKRMNAFLEHGIPANLVATHIV
NASRETQFVLGLVRNVMKQKELLHIHSTVASLRKAIGLEYLPVEMGGDNG
SLSDAMTRYETQLLSFSPYFTEDERYGVDEKLREASEKDQERGAPLVTDV
PNDGTFRMINFDASFLDH

BO10288.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1902-PC 312 CG1902-PC 1..312 1..312 1613 100 Plus
CG1902-PA 312 CG1902-PA 1..312 1..312 1613 100 Plus
CG30339-PA 308 CG30339-PA 1..308 1..312 564 38.6 Plus
CG12926-PA 313 CG12926-PA 9..313 4..312 530 37.1 Plus
CG33966-PA 310 CG33966-PA 1..310 1..312 491 34.8 Plus