Clone Sequence Records
BO10288.3prime Sequence
909 bp (786 high quality bases) assembled on 2006-04-19
> BO10288.3prime
ATGGTCTAGAAAGCTTGCATCGAAGTTAATCATTCGGAAGGTTCCGTCGT
TCGGAACGTCGGTTACTAACGGAGCACCCCTTTCCTGATCCTTCTCACTG
GCTTCCCGCAATTTCTCATCCACGCCATATCGCTCGTCTTCCGTGAAGTA
CGGGGAAAAGCTTAGCAGCTGGGTCTCGTAGCGCGTCATTGCATCAGACA
AAGATCCATTATCGCCGCCCATTTCCACGGGTAAATACTCCAATCCAATT
GCCTTTCGCAGAGACGCGACGGTGGAGTGAATGTGCAACAGCTCCTTTTG
CTTCATGACATTCCGAACCAGTCCAAGGACAAACTGCGTCTCCCTGGATG
CATTGACAATGTGCGTGGCCACTAAATTCGCTGGAATTCCATGCTCTAGG
AATGCATTCATCCGCTTGAACATGCCAGGATCGAACTGCAGTAGCAGAGA
GTAGGGTATCTTGGTGAAGTCGATGATCTCCACCACGCCGGCTATGTTCC
AGTTGTCGTCCGTGTTGATCTCGATCTCAGCGCGAAAAGCGTGGAAGCGG
AAAATGTCGCTGACACTGTGCTTGGAAGGTTCAATGTGACCCATTCGTGT
GTAGTGGATGCGGGGGCCACCAGGGCCAATAGGTTTGGGCAATGTGGCGA
ATATTCCTGAACGAGCCAGTTCTATCAGCTTATCGTCCACCTGGCGACCC
TTGAGCAGTTCTCTTTCCTTTGATTTGTAGGTGTAGTAGAAGAGTACCCT
CTTCTTGGCCTCCTCTACGTCCCAGCGGCAGAAGCGCAGAAAGGCCACCA
AGAACTGATCGTCGGTCCGCGCCTCCAGGTAGATCTGTTTGTCGATCCAG
GTCCTTAGCGCCTCGATCTTCGCAACCGTCGAGGACGGATCCTCGCAGAG
CTGCGTTCG
BO10288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-PA | 939 | CG1902-RA | 46..936 | 909..19 | 4455 | 100 | Minus |
CG1902-PC | 939 | CG1902-RC | 46..936 | 909..19 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 1782 | CG1902-RC | 207..1097 | 909..19 | 4455 | 100 | Minus |
CG1902-RA | 1749 | CG1902-RA | 174..1064 | 909..19 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9604244..9604611 | 656..289 | 1840 | 100 | Minus |
2R | 25286936 | 2R | 9604669..9604939 | 289..19 | 1355 | 100 | Minus |
2R | 25286936 | 2R | 9603927..9604180 | 909..656 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:03:09 has no hits.
BO10288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:26 Download gff for
BO10288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 46..939 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:49 Download gff for
BO10288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 46..939 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:42:28 Download gff for
BO10288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 174..1064 | 19..909 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:17:54 Download gff for
BO10288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 174..1064 | 19..909 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:17:54 Download gff for
BO10288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9603927..9604180 | 656..909 | 100 | -> | Minus |
2R | 9604245..9604611 | 289..655 | 100 | -> | Minus |
2R | 9604670..9604939 | 19..288 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:42:28 Download gff for
BO10288.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5491432..5491685 | 656..909 | 100 | -> | Minus |
arm_2R | 5491750..5492116 | 289..655 | 100 | -> | Minus |
arm_2R | 5492175..5492444 | 19..288 | 100 | | Minus |
BO10288.5prime Sequence
917 bp (776 high quality bases) assembled on 2006-04-19
> BO10288.5prime
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGNCATGACGCGCTACGAGACCC
AGCTGCTAAGCTTTTCCCCGTACTTCACGGANGACGAGCGATATGGCGTG
GATGAGAAATTGCGGGAAAGCAGTGAGAAGGATCAGGAAAGGGGTGCTCC
GTTAGTAACCGACGTTC
BO10288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-PA | 939 | CG1902-RA | 1..901 | 17..917 | 4392 | 99.4 | Plus |
CG1902-PC | 939 | CG1902-RC | 1..901 | 17..917 | 4392 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 1782 | CG1902-RC | 161..1062 | 16..917 | 4443 | 99.4 | Plus |
CG1902-RA | 1749 | CG1902-RA | 128..1029 | 16..917 | 4443 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9604244..9604611 | 315..682 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 9603881..9604180 | 16..315 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 9604669..9604904 | 682..917 | 1113 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:03:09 has no hits.
BO10288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:27 Download gff for
BO10288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:50 Download gff for
BO10288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-PC | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:08 Download gff for
BO10288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 117..1029 | 5..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:20 Download gff for
BO10288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 117..1029 | 5..917 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:20 Download gff for
BO10288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9604670..9604904 | 683..917 | 97 | | Plus |
2R | 9603870..9604180 | 5..315 | 98 | -> | Plus |
2R | 9604245..9604611 | 316..682 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:08 Download gff for
BO10288.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5491375..5491685 | 5..315 | 98 | -> | Plus |
arm_2R | 5491750..5492116 | 316..682 | 100 | -> | Plus |
arm_2R | 5492175..5492409 | 683..917 | 97 | | Plus |
BO10288.complete Sequence
970 bp (970 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631701
> BO10288.complete
GAAGTTATCAGTCGACATGGCCAAGATACGATCGCTGGAGCCGGAGCTGG
CAGAGGTGGCTCGAACGCAGCTCTGCGAGGATCCGTCCTCGACGGTTGCG
AAGATCGAGGCGCTAAGGACCTGGATCGACAAACAGATCTACCTGGAGGC
GCGGACCGACGATCAGTTCTTGGTGGCCTTTCTGCGCTTCTGCCGCTGGG
ACGTAGAGGAGGCCAAGAAGAGGGTACTCTTCTACTACACCTACAAATCA
AAGGAAAGAGAACTGCTCAAGGGTCGCCAGGTGGACGATAAGCTGATAGA
ACTGGCTCGTTCAGGAATATTCGCCACATTGCCCAAACCTATTGGCCCTG
GTGGCCCCCGCATCCACTACACACGAATGGGTCACATTGAACCTTCCAAG
CACAGTGTCAGCGACATTTTCCGCTTCCACGCTTTTCGCGCTGAGATCGA
GATCAACACGGACGACAACTGGAACATAGCCGGCGTGGTGGAGATCATCG
ACTTCACCAAGATACCCTACTCTCTGCTACTGCAGTTCGATCCTGGCATG
TTCAAGCGGATGAATGCATTCCTAGAGCATGGAATTCCAGCGAATTTAGT
GGCCACGCACATTGTCAATGCATCCAGGGAGACGCAGTTTGTCCTTGGAC
TGGTTCGGAATGTCATGAAGCAAAAGGAGCTGTTGCACATTCACTCCACC
GTCGCGTCTCTGCGAAAGGCAATTGGATTGGAGTATTTACCCGTGGAAAT
GGGCGGCGATAATGGATCTTTGTCTGATGCAATGACGCGCTACGAGACCC
AGCTGCTAAGCTTTTCCCCGTACTTCACGGAAGACGAGCGATATGGCGTG
GATGAGAAATTGCGGGAAGCCAGTGAGAAGGATCAGGAAAGGGGTGCTCC
GTTAGTAACCGACGTTCCGAACGACGGAACCTTCCGAATGATTAACTTCG
ATGCAAGCTTTCTAGACCAT
BO10288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 939 | CG1902-PC | 1..936 | 17..952 | 4680 | 100 | Plus |
CG1902-RA | 939 | CG1902-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-RC | 1782 | CG1902-RC | 161..1097 | 16..952 | 4685 | 100 | Plus |
CG1902-RA | 1749 | CG1902-RA | 128..1064 | 16..952 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9604244..9604611 | 315..682 | 1840 | 100 | Plus |
2R | 25286936 | 2R | 9603881..9604180 | 16..315 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 9604669..9604939 | 682..952 | 1355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:13:05 has no hits.
BO10288.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:11 Download gff for
BO10288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RC | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:53 Download gff for
BO10288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RC | 148..1095 | 5..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:59 Download gff for
BO10288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 129..1064 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:12 Download gff for
BO10288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RC | 148..1095 | 5..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:25 Download gff for
BO10288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1902-RA | 129..1064 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:25 Download gff for
BO10288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9603882..9604180 | 17..315 | 100 | -> | Plus |
2R | 9604245..9604611 | 316..682 | 100 | -> | Plus |
2R | 9604670..9604939 | 683..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:59 Download gff for
BO10288.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5491387..5491685 | 17..315 | 100 | -> | Plus |
arm_2R | 5491750..5492116 | 316..682 | 100 | -> | Plus |
arm_2R | 5492175..5492444 | 683..954 | 99 | | Plus |
BO10288.pep Sequence
Translation from 16 to 970
> BO10288.pep
MAKIRSLEPELAEVARTQLCEDPSSTVAKIEALRTWIDKQIYLEARTDDQ
FLVAFLRFCRWDVEEAKKRVLFYYTYKSKERELLKGRQVDDKLIELARSG
IFATLPKPIGPGGPRIHYTRMGHIEPSKHSVSDIFRFHAFRAEIEINTDD
NWNIAGVVEIIDFTKIPYSLLLQFDPGMFKRMNAFLEHGIPANLVATHIV
NASRETQFVLGLVRNVMKQKELLHIHSTVASLRKAIGLEYLPVEMGGDNG
SLSDAMTRYETQLLSFSPYFTEDERYGVDEKLREASEKDQERGAPLVTDV
PNDGTFRMINFDASFLDH
BO10288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1902-PC | 312 | CG1902-PC | 1..312 | 1..312 | 1613 | 100 | Plus |
CG1902-PA | 312 | CG1902-PA | 1..312 | 1..312 | 1613 | 100 | Plus |
CG30339-PA | 308 | CG30339-PA | 1..308 | 1..312 | 564 | 38.6 | Plus |
CG12926-PA | 313 | CG12926-PA | 9..313 | 4..312 | 530 | 37.1 | Plus |
CG33966-PA | 310 | CG33966-PA | 1..310 | 1..312 | 491 | 34.8 | Plus |