Clone Sequence Records
BO10290.3prime Sequence
940 bp (850 high quality bases) assembled on 2006-04-19
> BO10290.3prime
ATGGTCTAGAAAGCTTGCTAGGTTGGTTTTCGGCCAAGCGTCCAGTGCGT
CTAAAACTATGTTATCTGACTTTTCTGGCGATTGCTTAAGTTCCGGTGGC
GGGCCCATCAAGTGGGCATATTTGGCCAAATACGGAGTCAGCAGCTCCAT
GGGCAGAGGAAAGATAATGGTGGAGTTCTTCTCGGCGGAGATGCTGCTCA
GGGTTTGCAAGTAGCGCAGCTGCAAGGCCGATGGACTGGCGGAAATGACA
TCGGATGCCTCCTTGAGCGCTGTGGCGGACTTCTTCTCACCCTCGGCGGC
GATCACCTTGGCACGAGCATCACGAGCTGCCTCCGCTTCGGCGGCCATGG
CACGCTGCATGGAAACGGGCAGGGAGACATCCTTGATCTCAACGCGCTCC
ACCATGACGCCCCACGGCTCGGTGGCCTCGTCCAACGTGGCCTGCATATT
GTGGGCCAGGGTTTCGCGCTCGGTTAGCAGTTCGGACAGGTTGCGAGTGC
CGACGATATTACGGAGCGTGGTGGCCGCCAGGAGGCGAGTGGACATGCTG
TAGTCCTCGACCTGGATGACCGCATAAAGGGGATCACTGATGCGATAGTA
GACAACGGCGTCCACAGTGACCGTCACGGAATCCTTCGTCAGCATCTCCT
GCTGCGGCACATTGAAGGTAACCGTGCGCAGGTCCACCTTGCGGTACTCA
TCGATGCACGGCAGGATGAAGAACATGCCGGGACCACGAGCTCCGCCGCT
CAGTCTGCCCAGCCGGAAGATGATCGCCCGCTCGTACTCCGCGACCACCT
TGAAGCATATGAAGATGGCGATGGGCGATGTGATGATGAAGATCAGCACG
GAGAACAGGGTGACCACCCATTCCATGCAGCCCTTGGGCTCGTTCTCCGA
AGTTTTGAATCCACGATACTGCTGCGTCGTGCCGGGCACT
BO10290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7635-PA | 1053 | Mec2-RA | 129..1050 | 940..19 | 4485 | 99.4 | Minus |
CG33253-PA | 1104 | CG33253-RA | 844..944 | 240..140 | 180 | 87.1 | Minus |
CG33253-PA | 1104 | CG33253-RA | 650..704 | 434..380 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1238 | CG7635-RA | 209..1130 | 940..19 | 4535 | 99.5 | Minus |
CG33253-RB | 1733 | CG33253-RB | 392..1068 | 813..140 | 1170 | 78.5 | Minus |
CG33253-RC | 2410 | CG33253-RC | 1069..1745 | 813..140 | 1170 | 78.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19189034..19189547 | 899..386 | 2540 | 99.6 | Minus |
X | 23542271 | X | 19189882..19190085 | 222..19 | 990 | 99 | Minus |
X | 23542271 | X | 19189640..19189805 | 385..220 | 830 | 100 | Minus |
X | 23542271 | X | 19185776..19186206 | 813..386 | 665 | 77.5 | Minus |
X | 23542271 | X | 19186278..19186443 | 385..220 | 245 | 76.5 | Minus |
X | 23542271 | X | 19186535..19186613 | 218..140 | 245 | 87.3 | Minus |
X | 23542271 | X | 19188243..19188283 | 940..900 | 190 | 97.6 | Minus |
Blast to na_te.dros performed 2015-02-10 19:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G4 | 3856 | G4 G4_DM 3856bp | 3310..3373 | 87..25 | 118 | 70.8 | Minus |
BO10290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:30 Download gff for
BO10290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-PA | 129..1053 | 16..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:54 Download gff for
BO10290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7635-PA | 129..1053 | 16..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:35:44 Download gff for
BO10290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 209..1130 | 19..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:16 Download gff for
BO10290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 209..1130 | 19..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:16 Download gff for
BO10290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19188243..19188283 | 900..940 | 97 | -> | Minus |
X | 19189034..19189547 | 386..899 | 99 | -> | Minus |
X | 19189640..19189805 | 220..385 | 100 | -> | Minus |
X | 19189885..19190085 | 19..219 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:35:44 Download gff for
BO10290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19083673..19083838 | 220..385 | 100 | -> | Minus |
arm_X | 19082276..19082316 | 900..940 | 97 | -> | Minus |
arm_X | 19083067..19083580 | 386..899 | 99 | -> | Minus |
arm_X | 19083918..19084118 | 19..219 | 99 | | Minus |
BO10290.5prime Sequence
906 bp (854 high quality bases) assembled on 2006-04-19
> BO10290.5prime
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTTGCAACCCTGAGCAGCATCTCCGC
CGAGAA
BO10290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7635-PA | 1053 | Mec2-RA | 1..860 | 17..876 | 4200 | 99.5 | Plus |
CG33253-PA | 1104 | CG33253-RA | 650..704 | 651..705 | 150 | 90.9 | Plus |
CG7635-PA | 1053 | Mec2-RA | 864..890 | 880..906 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1238 | CG7635-RA | 81..970 | 17..906 | 4345 | 99.3 | Plus |
CG33253-RB | 1733 | CG33253-RB | 392..1029 | 272..906 | 1005 | 77.7 | Plus |
CG33253-RC | 2410 | CG33253-RC | 1069..1706 | 272..906 | 1005 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19189034..19189547 | 186..699 | 2540 | 99.6 | Plus |
X | 23542271 | X | 19189640..19189805 | 700..865 | 830 | 100 | Plus |
X | 23542271 | X | 19188115..19188283 | 17..185 | 815 | 98.8 | Plus |
X | 23542271 | X | 19185776..19186206 | 272..699 | 665 | 77.5 | Plus |
X | 23542271 | X | 19186278..19186443 | 700..865 | 245 | 76.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:03:18 has no hits.
BO10290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:31 Download gff for
BO10290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:55 Download gff for
BO10290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7635-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:09 Download gff for
BO10290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..970 | 9..906 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:54 Download gff for
BO10290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..970 | 9..906 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:54 Download gff for
BO10290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19188110..19188283 | 9..185 | 97 | -> | Plus |
X | 19189034..19189547 | 186..699 | 99 | -> | Plus |
X | 19189640..19189805 | 700..865 | 100 | -> | Plus |
X | 19189885..19189925 | 866..906 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:09 Download gff for
BO10290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19082143..19082316 | 9..185 | 97 | -> | Plus |
arm_X | 19083067..19083580 | 186..699 | 99 | -> | Plus |
arm_X | 19083673..19083838 | 700..865 | 100 | -> | Plus |
arm_X | 19083918..19083958 | 866..906 | 95 | | Plus |
BO10290.complete Sequence
1084 bp (1084 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ638671
> BO10290.complete
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTGCAAACCCTGAGCAGCATCTCCGC
CGAGAAGAACTCCACCATTATCTTTCCTCTGCCCATGGAGCTGCTGACTC
CGTATTTGGCCAAATATGCCCACTTGATGGGCCCGCCACCGGAACTTAAG
CAATCGCCAGAAAAGTCAGATAACATAGTTTTAGACGCACTGGACGCTTG
GCCGAAAACCAACCTAGCAAGCTTTCTAGACCAT
BO10290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1053 | CG7635-PA | 1..1050 | 17..1066 | 5160 | 99.4 | Plus |
CG33253-RB | 1245 | CG33253-PB | 268..944 | 272..945 | 1145 | 78.3 | Plus |
CG33253-RC | 909 | CG33253-PC | 73..749 | 272..945 | 1145 | 78.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-RA | 1238 | CG7635-RA | 81..1130 | 17..1066 | 5160 | 99.4 | Plus |
CG33253-RB | 1733 | CG33253-RB | 392..1068 | 272..945 | 1145 | 78.3 | Plus |
CG33253-RC | 2410 | CG33253-RC | 1069..1745 | 272..945 | 1145 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19189034..19189547 | 186..699 | 2540 | 99.6 | Plus |
X | 23542271 | X | 19189882..19190085 | 863..1066 | 990 | 99 | Plus |
X | 23542271 | X | 19189640..19189805 | 700..865 | 830 | 100 | Plus |
X | 23542271 | X | 19188115..19188283 | 17..185 | 815 | 98.8 | Plus |
X | 23542271 | X | 19185776..19186206 | 272..699 | 665 | 77.5 | Plus |
X | 23542271 | X | 19186278..19186443 | 700..865 | 245 | 76.5 | Plus |
X | 23542271 | X | 19186535..19186613 | 867..945 | 245 | 87.3 | Plus |
Blast to na_te.dros performed 2014-11-27 07:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G4 | 3856 | G4 G4_DM 3856bp | 3310..3373 | 998..1060 | 118 | 70.8 | Plus |
BO10290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:13 Download gff for
BO10290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 1..1053 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:55 Download gff for
BO10290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..1130 | 9..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:53 Download gff for
BO10290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 81..1130 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:13 Download gff for
BO10290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 76..1130 | 9..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:21 Download gff for
BO10290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mec2-RA | 81..1130 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:21 Download gff for
BO10290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19188115..19188283 | 17..185 | 98 | -> | Plus |
X | 19189034..19189547 | 186..699 | 99 | -> | Plus |
X | 19189640..19189805 | 700..865 | 100 | -> | Plus |
X | 19189885..19190085 | 866..1068 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:53 Download gff for
BO10290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19082148..19082316 | 17..185 | 98 | -> | Plus |
arm_X | 19083067..19083580 | 186..699 | 99 | -> | Plus |
arm_X | 19083673..19083838 | 700..865 | 100 | -> | Plus |
arm_X | 19083918..19084118 | 866..1068 | 98 | | Plus |
BO10290.pep Sequence
Translation from 16 to 1084
> BO10290.pep
MEPHQDSPVYANYEDMRNSGPASSTAYMVNMGAAGMAPEPALRVPGTTQQ
YRGFKTSENEPKGCMEWVVTLFSVLIFIITSPIAIFICFKVVAEYERAII
FRLGRLSGGARGPGMFFILPCIDEYRKVDLRTVTFNVPQQEMLTKDSVTV
TVDAVVYYRISDPLYAVIQVEDYSMSTRLLAATTLRNIVGTRNLSELLTE
RETLAHNMQATLDEATEPWGVMVERVEIKDVSLPVSMQRAMAAEAEAARD
ARAKVIAAEGEKKSATALKEASDVISASPSALQLRYLQTLSSISAEKNST
IIFPLPMELLTPYLAKYAHLMGPPPELKQSPEKSDNIVLDALDAWPKTNL
ASFLDH
BO10290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mec2-PA | 350 | CG7635-PA | 1..350 | 1..350 | 1769 | 100 | Plus |
CG33253-PA | 367 | CG33253-PA | 49..324 | 45..319 | 1064 | 76.1 | Plus |
CG33253-PB | 414 | CG33253-PB | 49..324 | 45..319 | 1064 | 76.1 | Plus |
CG33253-PC | 302 | CG33253-PC | 2..259 | 63..319 | 1023 | 78.3 | Plus |
CG42540-PH | 393 | CG42540-PH | 16..343 | 13..333 | 857 | 55.5 | Plus |