Clone BO10290 Report

Search the DGRC for BO10290

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptMec2-RA
Protein status:BO10290.pep: validated full length
Sequenced Size:1084

Clone Sequence Records

BO10290.3prime Sequence

940 bp (850 high quality bases) assembled on 2006-04-19

> BO10290.3prime
ATGGTCTAGAAAGCTTGCTAGGTTGGTTTTCGGCCAAGCGTCCAGTGCGT
CTAAAACTATGTTATCTGACTTTTCTGGCGATTGCTTAAGTTCCGGTGGC
GGGCCCATCAAGTGGGCATATTTGGCCAAATACGGAGTCAGCAGCTCCAT
GGGCAGAGGAAAGATAATGGTGGAGTTCTTCTCGGCGGAGATGCTGCTCA
GGGTTTGCAAGTAGCGCAGCTGCAAGGCCGATGGACTGGCGGAAATGACA
TCGGATGCCTCCTTGAGCGCTGTGGCGGACTTCTTCTCACCCTCGGCGGC
GATCACCTTGGCACGAGCATCACGAGCTGCCTCCGCTTCGGCGGCCATGG
CACGCTGCATGGAAACGGGCAGGGAGACATCCTTGATCTCAACGCGCTCC
ACCATGACGCCCCACGGCTCGGTGGCCTCGTCCAACGTGGCCTGCATATT
GTGGGCCAGGGTTTCGCGCTCGGTTAGCAGTTCGGACAGGTTGCGAGTGC
CGACGATATTACGGAGCGTGGTGGCCGCCAGGAGGCGAGTGGACATGCTG
TAGTCCTCGACCTGGATGACCGCATAAAGGGGATCACTGATGCGATAGTA
GACAACGGCGTCCACAGTGACCGTCACGGAATCCTTCGTCAGCATCTCCT
GCTGCGGCACATTGAAGGTAACCGTGCGCAGGTCCACCTTGCGGTACTCA
TCGATGCACGGCAGGATGAAGAACATGCCGGGACCACGAGCTCCGCCGCT
CAGTCTGCCCAGCCGGAAGATGATCGCCCGCTCGTACTCCGCGACCACCT
TGAAGCATATGAAGATGGCGATGGGCGATGTGATGATGAAGATCAGCACG
GAGAACAGGGTGACCACCCATTCCATGCAGCCCTTGGGCTCGTTCTCCGA
AGTTTTGAATCCACGATACTGCTGCGTCGTGCCGGGCACT

BO10290.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7635-PA 1053 Mec2-RA 129..1050 940..19 4485 99.4 Minus
CG33253-PA 1104 CG33253-RA 844..944 240..140 180 87.1 Minus
CG33253-PA 1104 CG33253-RA 650..704 434..380 150 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1238 CG7635-RA 209..1130 940..19 4535 99.5 Minus
CG33253-RB 1733 CG33253-RB 392..1068 813..140 1170 78.5 Minus
CG33253-RC 2410 CG33253-RC 1069..1745 813..140 1170 78.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19189034..19189547 899..386 2540 99.6 Minus
X 23542271 X 19189882..19190085 222..19 990 99 Minus
X 23542271 X 19189640..19189805 385..220 830 100 Minus
X 23542271 X 19185776..19186206 813..386 665 77.5 Minus
X 23542271 X 19186278..19186443 385..220 245 76.5 Minus
X 23542271 X 19186535..19186613 218..140 245 87.3 Minus
X 23542271 X 19188243..19188283 940..900 190 97.6 Minus
Blast to na_te.dros performed 2015-02-10 19:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
G4 3856 G4 G4_DM 3856bp 3310..3373 87..25 118 70.8 Minus

BO10290.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:30 Download gff for BO10290.3prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-PA 129..1053 16..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:54 Download gff for BO10290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7635-PA 129..1053 16..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:35:44 Download gff for BO10290.3prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 209..1130 19..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:16 Download gff for BO10290.3prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 209..1130 19..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:16 Download gff for BO10290.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19188243..19188283 900..940 97 -> Minus
X 19189034..19189547 386..899 99 -> Minus
X 19189640..19189805 220..385 100 -> Minus
X 19189885..19190085 19..219 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:35:44 Download gff for BO10290.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19083673..19083838 220..385 100 -> Minus
arm_X 19082276..19082316 900..940 97 -> Minus
arm_X 19083067..19083580 386..899 99 -> Minus
arm_X 19083918..19084118 19..219 99   Minus

BO10290.5prime Sequence

906 bp (854 high quality bases) assembled on 2006-04-19

> BO10290.5prime
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTTGCAACCCTGAGCAGCATCTCCGC
CGAGAA

BO10290.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7635-PA 1053 Mec2-RA 1..860 17..876 4200 99.5 Plus
CG33253-PA 1104 CG33253-RA 650..704 651..705 150 90.9 Plus
CG7635-PA 1053 Mec2-RA 864..890 880..906 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1238 CG7635-RA 81..970 17..906 4345 99.3 Plus
CG33253-RB 1733 CG33253-RB 392..1029 272..906 1005 77.7 Plus
CG33253-RC 2410 CG33253-RC 1069..1706 272..906 1005 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19189034..19189547 186..699 2540 99.6 Plus
X 23542271 X 19189640..19189805 700..865 830 100 Plus
X 23542271 X 19188115..19188283 17..185 815 98.8 Plus
X 23542271 X 19185776..19186206 272..699 665 77.5 Plus
X 23542271 X 19186278..19186443 700..865 245 76.5 Plus
Blast to na_te.dros performed on 2015-02-12 07:03:18 has no hits.

BO10290.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:31 Download gff for BO10290.5prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:55 Download gff for BO10290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7635-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:09 Download gff for BO10290.5prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..970 9..906 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:54 Download gff for BO10290.5prime
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..970 9..906 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:54 Download gff for BO10290.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19188110..19188283 9..185 97 -> Plus
X 19189034..19189547 186..699 99 -> Plus
X 19189640..19189805 700..865 100 -> Plus
X 19189885..19189925 866..906 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:09 Download gff for BO10290.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19082143..19082316 9..185 97 -> Plus
arm_X 19083067..19083580 186..699 99 -> Plus
arm_X 19083673..19083838 700..865 100 -> Plus
arm_X 19083918..19083958 866..906 95   Plus

BO10290.complete Sequence

1084 bp (1084 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ638671

> BO10290.complete
GAAGTTATCAGTCGACATGGAGCCGCACCAGGATTCGCCCGTGTACGCCA
ACTACGAAGATATGCGCAACTCTGGGCCGGCCAGCTCCACGGCGTACATG
GTCAACATGGGCGCCGCCGGCATGGCACCCGAGCCGGCTCTTCGAGTGCC
CGGCACGACGCAGCAGTATCGTGGATTCAAAACTTCGGAGAACGAGCCCA
AGGGCTGCATGGAATGGGTGGTCACCCTGTTCTCCGTGCTGATCTTCATC
ATCACATCGCCCATCGCCATCTTCATATGCTTCAAGGTGGTCGCGGAGTA
CGAGCGGGCGATCATCTTCCGGCTGGGCAGACTGAGCGGCGGAGCTCGTG
GTCCCGGCATGTTCTTCATCCTGCCGTGCATCGATGAGTACCGCAAGGTG
GACCTGCGCACGGTTACCTTCAATGTGCCGCAGCAGGAGATGCTGACGAA
GGATTCCGTGACGGTCACTGTGGACGCCGTTGTCTACTATCGCATCAGTG
ATCCCCTTTATGCGGTCATCCAGGTCGAGGACTACAGCATGTCCACTCGC
CTCCTGGCGGCCACCACGCTCCGTAATATCGTCGGCACTCGCAACCTGTC
CGAACTGCTAACCGAGCGCGAAACCCTGGCCCACAATATGCAGGCCACGT
TGGACGAGGCCACCGAGCCGTGGGGCGTCATGGTGGAGCGCGTTGAGATC
AAGGATGTCTCCCTGCCCGTTTCCATGCAGCGTGCCATGGCCGCCGAAGC
GGAGGCAGCTCGTGATGCTCGTGCCAAGGTGATCGCCGCCGAGGGTGAGA
AGAAGTCCGCCACAGCGCTCAAGGAGGCATCCGATGTCATTTCCGCCAGT
CCATCGGCCTTGCAGCTGCGCTACTTGCAAACCCTGAGCAGCATCTCCGC
CGAGAAGAACTCCACCATTATCTTTCCTCTGCCCATGGAGCTGCTGACTC
CGTATTTGGCCAAATATGCCCACTTGATGGGCCCGCCACCGGAACTTAAG
CAATCGCCAGAAAAGTCAGATAACATAGTTTTAGACGCACTGGACGCTTG
GCCGAAAACCAACCTAGCAAGCTTTCTAGACCAT

BO10290.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1053 CG7635-PA 1..1050 17..1066 5160 99.4 Plus
CG33253-RB 1245 CG33253-PB 268..944 272..945 1145 78.3 Plus
CG33253-RC 909 CG33253-PC 73..749 272..945 1145 78.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-RA 1238 CG7635-RA 81..1130 17..1066 5160 99.4 Plus
CG33253-RB 1733 CG33253-RB 392..1068 272..945 1145 78.3 Plus
CG33253-RC 2410 CG33253-RC 1069..1745 272..945 1145 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19189034..19189547 186..699 2540 99.6 Plus
X 23542271 X 19189882..19190085 863..1066 990 99 Plus
X 23542271 X 19189640..19189805 700..865 830 100 Plus
X 23542271 X 19188115..19188283 17..185 815 98.8 Plus
X 23542271 X 19185776..19186206 272..699 665 77.5 Plus
X 23542271 X 19186278..19186443 700..865 245 76.5 Plus
X 23542271 X 19186535..19186613 867..945 245 87.3 Plus
Blast to na_te.dros performed 2014-11-27 07:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
G4 3856 G4 G4_DM 3856bp 3310..3373 998..1060 118 70.8 Plus

BO10290.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:13 Download gff for BO10290.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 1..1053 17..1069 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:55 Download gff for BO10290.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..1130 9..1066 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:53 Download gff for BO10290.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 81..1130 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:13 Download gff for BO10290.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 76..1130 9..1066 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:21 Download gff for BO10290.complete
Subject Subject Range Query Range Percent Splice Strand
Mec2-RA 81..1130 17..1068 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:21 Download gff for BO10290.complete
Subject Subject Range Query Range Percent Splice Strand
X 19188115..19188283 17..185 98 -> Plus
X 19189034..19189547 186..699 99 -> Plus
X 19189640..19189805 700..865 100 -> Plus
X 19189885..19190085 866..1068 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:53 Download gff for BO10290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19082148..19082316 17..185 98 -> Plus
arm_X 19083067..19083580 186..699 99 -> Plus
arm_X 19083673..19083838 700..865 100 -> Plus
arm_X 19083918..19084118 866..1068 98   Plus

BO10290.pep Sequence

Translation from 16 to 1084

> BO10290.pep
MEPHQDSPVYANYEDMRNSGPASSTAYMVNMGAAGMAPEPALRVPGTTQQ
YRGFKTSENEPKGCMEWVVTLFSVLIFIITSPIAIFICFKVVAEYERAII
FRLGRLSGGARGPGMFFILPCIDEYRKVDLRTVTFNVPQQEMLTKDSVTV
TVDAVVYYRISDPLYAVIQVEDYSMSTRLLAATTLRNIVGTRNLSELLTE
RETLAHNMQATLDEATEPWGVMVERVEIKDVSLPVSMQRAMAAEAEAARD
ARAKVIAAEGEKKSATALKEASDVISASPSALQLRYLQTLSSISAEKNST
IIFPLPMELLTPYLAKYAHLMGPPPELKQSPEKSDNIVLDALDAWPKTNL
ASFLDH

BO10290.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mec2-PA 350 CG7635-PA 1..350 1..350 1769 100 Plus
CG33253-PA 367 CG33253-PA 49..324 45..319 1064 76.1 Plus
CG33253-PB 414 CG33253-PB 49..324 45..319 1064 76.1 Plus
CG33253-PC 302 CG33253-PC 2..259 63..319 1023 78.3 Plus
CG42540-PH 393 CG42540-PH 16..343 13..333 857 55.5 Plus