Clone Sequence Records
BO10292.3prime Sequence
816 bp (815 high quality bases) assembled on 2006-04-19
> BO10292.3prime
ATGGTCTAGAAAGCTTGCGTTGTAGGTCATGTAGCGTGGAGTGGCGCTGA
ACTTGGCGTAGCTCTTGATAACCTTCTTGACGGCTTCGAGGAAATCCTTC
TCTGTGGCCACCTTGCGACGCGCCCGAATGGCGAACATGCCCGCTTCCGT
GCATACTGACCGGATCTCAGCACCAGTCGAGTTGGGACATAGACGCGCCA
GCAGATCGAAGCGAATATCTCGCTCCACGGACATGGAGCGGGCGTGAATC
TTAAAGATGTGCGAGCGACCGTCCTGGTCAGGCAGGCCGAACTCCACCTT
TCGGTCCAGACGACCGGGACGCATGAGCGCCGGATCCAACGTGTCGGGTC
GGTTGGTGGCCATCAGCACCTTGATATTTCCGCGCGGATCGAAGCCATCC
AGTTGGTTAATCAGCTCCAACATGGTGCGCTGCACCTCGTTGTCGCCGCC
GGCCCCATCGTCGAATCGGGCACCACCGATAGCATCAATTTCGTCGAAGA
AGATGAGACAAGCCTTTTTGGAACGCGCCATTTCGAAGAGCTCGCGCACC
ATACGAGCGCCCTCACCCACGTACTTTTGCACCAGCTCAGAGCCAATGAC
GCGGATAAAGCAAGCGTCCGTGCGGTTGGCAACGGCGCGGGCACACAGGG
TCTTTCCCGTTCCCGGTGGGCCAAACAGTAGCACACCTTTGGGCGGCTCA
ATACCCAGATTGACGAACTTTTCCGGGTGCAGCAGTGGCGTCTCCACCAC
CTCGCGCAGCTTTTCGATTTGTTCCTTGCAGCCGCCCACATCGCTGTAGG
TGACGTCCGGCTTGTC
BO10292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1341-PA | 1302 | Rpt1-RA | 502..1299 | 816..19 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt1-RA | 1515 | CG1341-RA | 619..1416 | 816..19 | 3990 | 100 | Minus |
Rpt2-RB | 1625 | CG5289-RB | 1145..1288 | 432..289 | 240 | 77.8 | Minus |
Rpt2-RA | 1501 | CG5289-RA | 1021..1164 | 432..289 | 240 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7652539..7653336 | 19..816 | 3990 | 100 | Plus |
3R | 32079331 | 3R | 23930210..23930353 | 289..432 | 240 | 77.8 | Plus |
X | 23542271 | X | 6290093..6290295 | 304..506 | 205 | 73.4 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:56:27 has no hits.
BO10292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:34 Download gff for
BO10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-PA | 502..1302 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:00 Download gff for
BO10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1341-PA | 502..1302 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:37 Download gff for
BO10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 619..1422 | 11..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:19 Download gff for
BO10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 619..1422 | 11..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:19 Download gff for
BO10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7652533..7653336 | 11..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:37 Download gff for
BO10292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3540038..3540841 | 11..816 | 99 | | Plus |
BO10292.5prime Sequence
924 bp (753 high quality bases) assembled on 2006-04-19
> BO10292.5prime
GAAGTTATCAGTCGACATGCCGGACTACCTGGGCGACGACCAGCGCAAGG
TGAAGCACGATGAGAAGGAGGACAAGGAGATCAAGTCCCTCGACGAAGGC
GACATTGAGCTTCTAAAGACTTATGGGCAGAGCCAGTATCACAAATCCAT
CAAGAGCATCGAGGAGGACATTCAAAAGGCTGTGAAGCAGGTGAACGAGC
TGACTGGAATCAAGGAAAGCGACACGGGTCTGGCGCCACCAGCGCTCTGG
GATTTGGCCGCCGACAAGCAGATCCTGCAAAACGAGCAACCGCTGCAGGT
TGCCCGATGCACCAAGATCATCAACGCGGATTCCGACGACCCCAAGTATA
TCATCAATGTTAAGCAGTTCGCCAAGTTCGTGGTGGACCTAGCTGACTCG
GTGGCCCCTACTGACATAGAAGAGGGAATGCGTGTGGGTGTCGACCGCAA
CAAGTACCAGATCCACATTCCGCTGCCTCCCAAGATTGATCCTACGGTTA
CCATGATGCAGGTTGAGGACAAGCCGGACGTCACCTACAGCGATGTGGGC
GGCTGCAAGGAACAAATCGAAAAGCTGCGCGAGGTGGTGGAGACGCCACT
GCTGCACCCGGAAAAGTTCGTCAATCTGGGTATTGAGCCGCCCAAAGGTG
TGCTACTGTTTGGCCCACCGGGAACGGGAAAGACCCTGTGTGCCCGCGCC
GTTGCCAACCGCACGGACGCTTGCTTTATCCGCGTCATTGGCTCTGAGCT
GGTGCAAAAGTACGTGGGTGAGGGCGCTCGTATGGTGCGCGAGCTCTTCG
AAATGGCGCGTTCCAAAAAGGCTTGTCTCATCTTCTTCGACGAAATTGAT
GCTATCGGTGGTGCCCGATTCGACGATGGGGCCGGCGGGCGACACGAGGT
GCAGCGCACCATGTTGGAGCTGAT
BO10292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1341-PA | 1302 | Rpt1-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG1341-PA | 1302 | Rpt1-RA | 878..908 | 894..924 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt1-RA | 1515 | CG1341-RA | 118..1025 | 17..924 | 4495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7652930..7653837 | 924..17 | 4465 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:34 has no hits.
BO10292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:35 Download gff for
BO10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:02 Download gff for
BO10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1341-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:39 Download gff for
BO10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 118..1025 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:18 Download gff for
BO10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 118..1025 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:18 Download gff for
BO10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7652930..7653837 | 17..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:39 Download gff for
BO10292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3540435..3541342 | 17..924 | 99 | | Minus |
BO10292.complete Sequence
1333 bp (1333 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631702
> BO10292.complete
GAAGTTATCAGTCGACATGCCGGACTACCTGGGCGACGACCAGCGCAAGG
TGAAGCACGATGAGAAGGAGGACAAGGAGATCAAGTCCCTCGACGAAGGC
GACATTGAGCTTCTAAAGACTTATGGGCAGAGCCAGTATCACAAATCCAT
CAAGAGCATCGAGGAGGACATTCAAAAGGCTGTGAAGCAGGTGAACGAGC
TGACTGGAATCAAGGAAAGCGACACGGGTCTGGCGCCACCAGCGCTCTGG
GATTTGGCCGCCGACAAGCAGATCCTGCAAAACGAGCAACCGCTGCAGGT
TGCCCGATGCACCAAGATCATCAACGCGGATTCCGACGACCCCAAGTATA
TCATCAATGTTAAGCAGTTCGCCAAGTTCGTGGTGGACCTAGCTGACTCG
GTGGCCCCTACTGACATAGAAGAGGGAATGCGTGTGGGTGTCGACCGCAA
CAAGTACCAGATCCACATTCCGCTGCCTCCCAAGATTGATCCTACGGTTA
CCATGATGCAGGTTGAGGACAAGCCGGACGTCACCTACAGCGATGTGGGC
GGCTGCAAGGAACAAATCGAAAAGCTGCGCGAGGTGGTGGAGACGCCACT
GCTGCACCCGGAAAAGTTCGTCAATCTGGGTATTGAGCCGCCCAAAGGTG
TGCTACTGTTTGGCCCACCGGGAACGGGAAAGACCCTGTGTGCCCGCGCC
GTTGCCAACCGCACGGACGCTTGCTTTATCCGCGTCATTGGCTCTGAGCT
GGTGCAAAAGTACGTGGGTGAGGGCGCTCGTATGGTGCGCGAGCTCTTCG
AAATGGCGCGTTCCAAAAAGGCTTGTCTCATCTTCTTCGACGAAATTGAT
GCTATCGGTGGTGCCCGATTCGACGATGGGGCCGGCGGCGACAACGAGGT
GCAGCGCACCATGTTGGAGCTGATTAACCAACTGGATGGCTTCGATCCGC
GCGGAAATATCAAGGTGCTGATGGCCACCAACCGACCCGACACGTTGGAT
CCGGCGCTCATGCGTCCCGGTCGTCTGGACCGAAAGGTGGAGTTCGGCCT
GCCTGACCAGGACGGTCGCTCGCACATCTTTAAGATTCACGCCCGCTCCA
TGTCCGTGGAGCGAGATATTCGCTTCGATCTGCTGGCGCGTCTATGTCCC
AACTCGACTGGTGCTGAGATCCGGTCAGTATGCACGGAAGCGGGCATGTT
CGCCATTCGGGCGCGTCGCAAGGTGGCCACAGAGAAGGATTTCCTCGAAG
CCGTCAAGAAGGTTATCAAGAGCTACGCCAAGTTCAGCGCCACTCCACGC
TACATGACCTACAACGCAAGCTTTCTAGACCAT
BO10292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt1-RA | 1302 | CG1341-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Rpt2-RB | 1320 | CG5289-PB | 913..1056 | 902..1045 | 240 | 77.8 | Plus |
Rpt2-RA | 1320 | CG5289-PA | 913..1056 | 902..1045 | 240 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt1-RA | 1515 | CG1341-RA | 118..1416 | 17..1315 | 6495 | 100 | Plus |
Rpt2-RB | 1625 | CG5289-RB | 1145..1288 | 902..1045 | 240 | 77.8 | Plus |
Rpt2-RA | 1501 | CG5289-RA | 1021..1164 | 902..1045 | 240 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7652539..7653837 | 1315..17 | 6495 | 100 | Minus |
3R | 32079331 | 3R | 23930210..23930353 | 1045..902 | 240 | 77.8 | Minus |
X | 23542271 | X | 6290093..6290295 | 1030..828 | 205 | 73.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:11:07 has no hits.
BO10292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:14 Download gff for
BO10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 1..1302 | 17..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:57 Download gff for
BO10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 112..1416 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:31 Download gff for
BO10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 118..1416 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:14 Download gff for
BO10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 112..1416 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:42 Download gff for
BO10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt1-RA | 118..1416 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:42 Download gff for
BO10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7652537..7653837 | 17..1317 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:31 Download gff for
BO10292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3540042..3541342 | 17..1317 | 99 | | Minus |
BO10292.pep Sequence
Translation from 16 to 1333
> BO10292.pep
MPDYLGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEE
DIQKAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTK
IINADSDDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIH
IPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEK
FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV
GEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML
ELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDG
RSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRAR
RKVATEKDFLEAVKKVIKSYAKFSATPRYMTYNASFLDH
BO10292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt1-PA | 433 | CG1341-PA | 1..433 | 1..433 | 2237 | 100 | Plus |
Rpt6-PA | 405 | CG1489-PA | 10..391 | 38..418 | 899 | 49.5 | Plus |
Rpt4-PB | 397 | CG3455-PB | 12..382 | 33..416 | 864 | 45 | Plus |
Rpt6R-PA | 399 | CG2241-PA | 53..384 | 80..417 | 859 | 52.7 | Plus |
Rpt4R-PB | 398 | CG7257-PB | 78..383 | 111..416 | 812 | 48.4 | Plus |