Clone BO10292 Report

Search the DGRC for BO10292

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptRpt1-RA
Protein status:BO10292.pep: validated full length
Sequenced Size:1333

Clone Sequence Records

BO10292.3prime Sequence

816 bp (815 high quality bases) assembled on 2006-04-19

> BO10292.3prime
ATGGTCTAGAAAGCTTGCGTTGTAGGTCATGTAGCGTGGAGTGGCGCTGA
ACTTGGCGTAGCTCTTGATAACCTTCTTGACGGCTTCGAGGAAATCCTTC
TCTGTGGCCACCTTGCGACGCGCCCGAATGGCGAACATGCCCGCTTCCGT
GCATACTGACCGGATCTCAGCACCAGTCGAGTTGGGACATAGACGCGCCA
GCAGATCGAAGCGAATATCTCGCTCCACGGACATGGAGCGGGCGTGAATC
TTAAAGATGTGCGAGCGACCGTCCTGGTCAGGCAGGCCGAACTCCACCTT
TCGGTCCAGACGACCGGGACGCATGAGCGCCGGATCCAACGTGTCGGGTC
GGTTGGTGGCCATCAGCACCTTGATATTTCCGCGCGGATCGAAGCCATCC
AGTTGGTTAATCAGCTCCAACATGGTGCGCTGCACCTCGTTGTCGCCGCC
GGCCCCATCGTCGAATCGGGCACCACCGATAGCATCAATTTCGTCGAAGA
AGATGAGACAAGCCTTTTTGGAACGCGCCATTTCGAAGAGCTCGCGCACC
ATACGAGCGCCCTCACCCACGTACTTTTGCACCAGCTCAGAGCCAATGAC
GCGGATAAAGCAAGCGTCCGTGCGGTTGGCAACGGCGCGGGCACACAGGG
TCTTTCCCGTTCCCGGTGGGCCAAACAGTAGCACACCTTTGGGCGGCTCA
ATACCCAGATTGACGAACTTTTCCGGGTGCAGCAGTGGCGTCTCCACCAC
CTCGCGCAGCTTTTCGATTTGTTCCTTGCAGCCGCCCACATCGCTGTAGG
TGACGTCCGGCTTGTC

BO10292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1341-PA 1302 Rpt1-RA 502..1299 816..19 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt1-RA 1515 CG1341-RA 619..1416 816..19 3990 100 Minus
Rpt2-RB 1625 CG5289-RB 1145..1288 432..289 240 77.8 Minus
Rpt2-RA 1501 CG5289-RA 1021..1164 432..289 240 77.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7652539..7653336 19..816 3990 100 Plus
3R 32079331 3R 23930210..23930353 289..432 240 77.8 Plus
X 23542271 X 6290093..6290295 304..506 205 73.4 Plus
Blast to na_te.dros performed on 2015-02-01 09:56:27 has no hits.

BO10292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:34 Download gff for BO10292.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt1-PA 502..1302 15..816 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:00 Download gff for BO10292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1341-PA 502..1302 15..816 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:37 Download gff for BO10292.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 619..1422 11..816 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:19 Download gff for BO10292.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 619..1422 11..816 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:19 Download gff for BO10292.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7652533..7653336 11..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:37 Download gff for BO10292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3540038..3540841 11..816 99   Plus

BO10292.5prime Sequence

924 bp (753 high quality bases) assembled on 2006-04-19

> BO10292.5prime
GAAGTTATCAGTCGACATGCCGGACTACCTGGGCGACGACCAGCGCAAGG
TGAAGCACGATGAGAAGGAGGACAAGGAGATCAAGTCCCTCGACGAAGGC
GACATTGAGCTTCTAAAGACTTATGGGCAGAGCCAGTATCACAAATCCAT
CAAGAGCATCGAGGAGGACATTCAAAAGGCTGTGAAGCAGGTGAACGAGC
TGACTGGAATCAAGGAAAGCGACACGGGTCTGGCGCCACCAGCGCTCTGG
GATTTGGCCGCCGACAAGCAGATCCTGCAAAACGAGCAACCGCTGCAGGT
TGCCCGATGCACCAAGATCATCAACGCGGATTCCGACGACCCCAAGTATA
TCATCAATGTTAAGCAGTTCGCCAAGTTCGTGGTGGACCTAGCTGACTCG
GTGGCCCCTACTGACATAGAAGAGGGAATGCGTGTGGGTGTCGACCGCAA
CAAGTACCAGATCCACATTCCGCTGCCTCCCAAGATTGATCCTACGGTTA
CCATGATGCAGGTTGAGGACAAGCCGGACGTCACCTACAGCGATGTGGGC
GGCTGCAAGGAACAAATCGAAAAGCTGCGCGAGGTGGTGGAGACGCCACT
GCTGCACCCGGAAAAGTTCGTCAATCTGGGTATTGAGCCGCCCAAAGGTG
TGCTACTGTTTGGCCCACCGGGAACGGGAAAGACCCTGTGTGCCCGCGCC
GTTGCCAACCGCACGGACGCTTGCTTTATCCGCGTCATTGGCTCTGAGCT
GGTGCAAAAGTACGTGGGTGAGGGCGCTCGTATGGTGCGCGAGCTCTTCG
AAATGGCGCGTTCCAAAAAGGCTTGTCTCATCTTCTTCGACGAAATTGAT
GCTATCGGTGGTGCCCGATTCGACGATGGGGCCGGCGGGCGACACGAGGT
GCAGCGCACCATGTTGGAGCTGAT

BO10292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1341-PA 1302 Rpt1-RA 1..872 17..888 4360 100 Plus
CG1341-PA 1302 Rpt1-RA 878..908 894..924 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt1-RA 1515 CG1341-RA 118..1025 17..924 4495 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7652930..7653837 924..17 4465 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 11:00:34 has no hits.

BO10292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:35 Download gff for BO10292.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt1-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:02 Download gff for BO10292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1341-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:39 Download gff for BO10292.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 118..1025 17..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:18 Download gff for BO10292.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 118..1025 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:18 Download gff for BO10292.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7652930..7653837 17..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:39 Download gff for BO10292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3540435..3541342 17..924 99   Minus

BO10292.complete Sequence

1333 bp (1333 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631702

> BO10292.complete
GAAGTTATCAGTCGACATGCCGGACTACCTGGGCGACGACCAGCGCAAGG
TGAAGCACGATGAGAAGGAGGACAAGGAGATCAAGTCCCTCGACGAAGGC
GACATTGAGCTTCTAAAGACTTATGGGCAGAGCCAGTATCACAAATCCAT
CAAGAGCATCGAGGAGGACATTCAAAAGGCTGTGAAGCAGGTGAACGAGC
TGACTGGAATCAAGGAAAGCGACACGGGTCTGGCGCCACCAGCGCTCTGG
GATTTGGCCGCCGACAAGCAGATCCTGCAAAACGAGCAACCGCTGCAGGT
TGCCCGATGCACCAAGATCATCAACGCGGATTCCGACGACCCCAAGTATA
TCATCAATGTTAAGCAGTTCGCCAAGTTCGTGGTGGACCTAGCTGACTCG
GTGGCCCCTACTGACATAGAAGAGGGAATGCGTGTGGGTGTCGACCGCAA
CAAGTACCAGATCCACATTCCGCTGCCTCCCAAGATTGATCCTACGGTTA
CCATGATGCAGGTTGAGGACAAGCCGGACGTCACCTACAGCGATGTGGGC
GGCTGCAAGGAACAAATCGAAAAGCTGCGCGAGGTGGTGGAGACGCCACT
GCTGCACCCGGAAAAGTTCGTCAATCTGGGTATTGAGCCGCCCAAAGGTG
TGCTACTGTTTGGCCCACCGGGAACGGGAAAGACCCTGTGTGCCCGCGCC
GTTGCCAACCGCACGGACGCTTGCTTTATCCGCGTCATTGGCTCTGAGCT
GGTGCAAAAGTACGTGGGTGAGGGCGCTCGTATGGTGCGCGAGCTCTTCG
AAATGGCGCGTTCCAAAAAGGCTTGTCTCATCTTCTTCGACGAAATTGAT
GCTATCGGTGGTGCCCGATTCGACGATGGGGCCGGCGGCGACAACGAGGT
GCAGCGCACCATGTTGGAGCTGATTAACCAACTGGATGGCTTCGATCCGC
GCGGAAATATCAAGGTGCTGATGGCCACCAACCGACCCGACACGTTGGAT
CCGGCGCTCATGCGTCCCGGTCGTCTGGACCGAAAGGTGGAGTTCGGCCT
GCCTGACCAGGACGGTCGCTCGCACATCTTTAAGATTCACGCCCGCTCCA
TGTCCGTGGAGCGAGATATTCGCTTCGATCTGCTGGCGCGTCTATGTCCC
AACTCGACTGGTGCTGAGATCCGGTCAGTATGCACGGAAGCGGGCATGTT
CGCCATTCGGGCGCGTCGCAAGGTGGCCACAGAGAAGGATTTCCTCGAAG
CCGTCAAGAAGGTTATCAAGAGCTACGCCAAGTTCAGCGCCACTCCACGC
TACATGACCTACAACGCAAGCTTTCTAGACCAT

BO10292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt1-RA 1302 CG1341-PA 1..1299 17..1315 6495 100 Plus
Rpt2-RB 1320 CG5289-PB 913..1056 902..1045 240 77.8 Plus
Rpt2-RA 1320 CG5289-PA 913..1056 902..1045 240 77.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt1-RA 1515 CG1341-RA 118..1416 17..1315 6495 100 Plus
Rpt2-RB 1625 CG5289-RB 1145..1288 902..1045 240 77.8 Plus
Rpt2-RA 1501 CG5289-RA 1021..1164 902..1045 240 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7652539..7653837 1315..17 6495 100 Minus
3R 32079331 3R 23930210..23930353 1045..902 240 77.8 Minus
X 23542271 X 6290093..6290295 1030..828 205 73.4 Minus
Blast to na_te.dros performed on 2014-11-27 16:11:07 has no hits.

BO10292.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:14 Download gff for BO10292.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 1..1302 17..1319 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:57 Download gff for BO10292.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 112..1416 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:31 Download gff for BO10292.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 118..1416 17..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:14 Download gff for BO10292.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 112..1416 17..1323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:42 Download gff for BO10292.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt1-RA 118..1416 17..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:42 Download gff for BO10292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7652537..7653837 17..1317 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:31 Download gff for BO10292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3540042..3541342 17..1317 99   Minus

BO10292.pep Sequence

Translation from 16 to 1333

> BO10292.pep
MPDYLGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEE
DIQKAVKQVNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTK
IINADSDDPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIH
IPLPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEK
FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV
GEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML
ELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDG
RSHIFKIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIRAR
RKVATEKDFLEAVKKVIKSYAKFSATPRYMTYNASFLDH

BO10292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt1-PA 433 CG1341-PA 1..433 1..433 2237 100 Plus
Rpt6-PA 405 CG1489-PA 10..391 38..418 899 49.5 Plus
Rpt4-PB 397 CG3455-PB 12..382 33..416 864 45 Plus
Rpt6R-PA 399 CG2241-PA 53..384 80..417 859 52.7 Plus
Rpt4R-PB 398 CG7257-PB 78..383 111..416 812 48.4 Plus