Clone BO10293 Report

Search the DGRC for BO10293

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG6340-RA
Protein status:BO10293.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO10293.3prime Sequence

569 bp (568 high quality bases) assembled on 2006-04-19

> BO10293.3prime
ATGGTCTAGAAAGCTTGCTACATTAGACGTTTGATTTAAAGCGGACTCTG
TGCTATTATTTTGCCTGCCTCTGTAAGTGCTGCTGCTGGCAGCGCAGTCG
GCGATGGCGTCGCCCTTTGCGGCAGCGGAAGGAAACGGCACATGAAAGAT
CCGCTTGCGCTCCAACCCAGATACACACACACACACATACGTATGGAGTA
CAATAGCATATGGTATTTGGTATATATTATGGGAAGTAAATATCGATTTG
GTGCAACGGCAAGTCTTTACCTCATCAATGCGTCCTCTGCTGCTGCTCCT
ATGACTCTGCTGCTGCGACATCGGCTTTGTCTTCTCTCTCTCCCGCTCGC
GCTCTCTTTCTCGTTCCTTGCCGCGCGGACTGTTGCCGCTGCCATAGTTA
TTGTTGTTCTTCTGCTTTAATAAGCTATCAGTTGTTGTTTTCGGGGATTT
AGCATGCGGCAAATGCCGCAGTTGTTGTTGTTGTTGTGGTGCCCGTATCT
GAAAGCCAGCATCCTCCTGGTCGTCCTCACTACTATAATTCACTAGGGCC
TCCATGTCGACTGATAACT

BO10293.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PA 540 CG6340-RA 1..537 555..19 2685 100 Minus
CG6340-PB 1542 CG6340-RB 1..286 555..270 1430 100 Minus
CG6340-PC 324 CG6340-RC 1..285 555..271 1425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RA 1346 CG6340-RA 102..638 555..19 2685 100 Minus
CG6340-RB 1814 CG6340-RB 102..387 555..270 1430 100 Minus
CG6340-RF 2177 CG6340-RF 102..386 555..271 1425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15483198..15483672 493..19 2375 100 Minus
X 23542271 X 15482475..15482538 555..492 320 100 Minus
X 23542271 X 15482855..15482974 478..359 305 87 Minus
Blast to na_te.dros performed 2015-02-11 10:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 715..865 441..287 124 58.6 Minus

BO10293.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:36 Download gff for BO10293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PA 1..540 18..555 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:03 Download gff for BO10293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PA 1..540 18..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:21:42 Download gff for BO10293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 96..638 19..563 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:19 Download gff for BO10293.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 96..638 19..563 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:19 Download gff for BO10293.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15482469..15482537 493..563 94 -> Minus
X 15483199..15483672 19..492 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:21:42 Download gff for BO10293.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15376502..15376570 493..563 94 -> Minus
arm_X 15377232..15377705 19..492 100   Minus

BO10293.5prime Sequence

569 bp (568 high quality bases) assembled on 2006-04-19

> BO10293.5prime
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGTAAAGACTTGCCGTTGCACCAAATCGATATTTACTTCCCATAATATAT
ACCAAATACCATATGCTATTGTACTCCATACGTATGTGTGTGTGTGTGTA
TCTGGGTTGGAGCGCAAGCGGATCTTTCATGTGCCGTTTCCTTCCGCTGC
CGCAAAGGGCGACGCCATCGCCGACTGCGCTGCCAGCAGCAGCACTTACA
GAGGCAGGCAAAATAATAGCACAGAGTCCGCTTTAAATCAAACGTCTAAT
GTAGCAAGCTTTCTAGACC

BO10293.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PA 540 CG6340-RA 1..537 17..553 2685 100 Plus
CG6340-PB 1542 CG6340-RB 1..286 17..302 1430 100 Plus
CG6340-PC 324 CG6340-RC 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RA 1346 CG6340-RA 102..638 17..553 2685 100 Plus
CG6340-RB 1814 CG6340-RB 102..387 17..302 1430 100 Plus
CG6340-RF 2177 CG6340-RF 102..386 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15483198..15483672 79..553 2375 100 Plus
X 23542271 X 15482475..15482538 17..80 320 100 Plus
X 23542271 X 15482855..15482974 94..213 305 87 Plus
Blast to na_te.dros performed 2015-02-13 09:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 715..865 131..285 124 58.6 Plus

BO10293.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:37 Download gff for BO10293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PA 1..540 17..554 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:05 Download gff for BO10293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PA 1..540 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:54 Download gff for BO10293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 96..638 9..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:37 Download gff for BO10293.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 96..638 9..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:37 Download gff for BO10293.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15482469..15482537 9..79 94 -> Plus
X 15483199..15483672 80..553 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:54 Download gff for BO10293.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15376502..15376570 9..79 94 -> Plus
arm_X 15377232..15377705 80..553 100   Plus

BO10293.complete Sequence

571 bp (571 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631703

> BO10293.complete
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGTAAAGACTTGCCGTTGCACCAAATCGATATTTACTTCCCATAATATAT
ACCAAATACCATATGCTATTGTACTCCATACGTATGTGTGTGTGTGTGTA
TCTGGGTTGGAGCGCAAGCGGATCTTTCATGTGCCGTTTCCTTCCGCTGC
CGCAAAGGGCGACGCCATCGCCGACTGCGCTGCCAGCAGCAGCACTTACA
GAGGCAGGCAAAATAATAGCACAGAGTCCGCTTTAAATCAAACGTCTAAT
GTAGCAAGCTTTCTAGACCAT

BO10293.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RA 540 CG6340-PA 1..537 17..553 2685 100 Plus
CG6340-RB 1542 CG6340-PB 1..286 17..302 1430 100 Plus
CG6340-RF 324 CG6340-PF 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RA 1346 CG6340-RA 102..638 17..553 2685 100 Plus
CG6340-RB 1814 CG6340-RB 102..387 17..302 1430 100 Plus
CG6340-RF 2177 CG6340-RF 102..386 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15483198..15483672 79..553 2375 100 Plus
X 23542271 X 15482475..15482538 17..80 320 100 Plus
X 23542271 X 15482855..15482974 94..213 305 87 Plus
Blast to na_te.dros performed 2014-11-27 07:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 715..865 131..285 124 58.6 Plus

BO10293.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:34 Download gff for BO10293.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 1..540 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:00 Download gff for BO10293.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 93..635 9..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:56 Download gff for BO10293.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 102..638 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:34 Download gff for BO10293.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 93..635 9..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:51 Download gff for BO10293.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RA 102..638 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:51 Download gff for BO10293.complete
Subject Subject Range Query Range Percent Splice Strand
X 15482475..15482537 17..79 100 -> Plus
X 15483199..15483672 80..555 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for BO10293.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15376508..15376570 17..79 100 -> Plus
arm_X 15377232..15377705 80..555 99   Plus

BO10293.pep Sequence

Translation from 16 to 571

> BO10293.pep
MEALVNYSSEDDQEDAGFQIRAPQQQQQLRHLPHAKSPKTTTDSLLKQKN
NNNYGSGNSPRGKEREREREREREKTKPMSQQQSHRSSSRGRIDEVKTCR
CTKSIFTSHNIYQIPYAIVLHTYVCVCVSGLERKRIFHVPFPSAAAKGDA
IADCAASSSTYRGRQNNSTESALNQTSNVASFLDH

BO10293.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PA 179 CG6340-PA 1..179 1..179 933 100 Plus
CG6340-PF 107 CG6340-PF 1..98 1..98 500 99 Plus
CG6340-PB 513 CG6340-PB 1..95 1..95 492 100 Plus