Clone Sequence Records
BO10293.3prime Sequence
569 bp (568 high quality bases) assembled on 2006-04-19
> BO10293.3prime
ATGGTCTAGAAAGCTTGCTACATTAGACGTTTGATTTAAAGCGGACTCTG
TGCTATTATTTTGCCTGCCTCTGTAAGTGCTGCTGCTGGCAGCGCAGTCG
GCGATGGCGTCGCCCTTTGCGGCAGCGGAAGGAAACGGCACATGAAAGAT
CCGCTTGCGCTCCAACCCAGATACACACACACACACATACGTATGGAGTA
CAATAGCATATGGTATTTGGTATATATTATGGGAAGTAAATATCGATTTG
GTGCAACGGCAAGTCTTTACCTCATCAATGCGTCCTCTGCTGCTGCTCCT
ATGACTCTGCTGCTGCGACATCGGCTTTGTCTTCTCTCTCTCCCGCTCGC
GCTCTCTTTCTCGTTCCTTGCCGCGCGGACTGTTGCCGCTGCCATAGTTA
TTGTTGTTCTTCTGCTTTAATAAGCTATCAGTTGTTGTTTTCGGGGATTT
AGCATGCGGCAAATGCCGCAGTTGTTGTTGTTGTTGTGGTGCCCGTATCT
GAAAGCCAGCATCCTCCTGGTCGTCCTCACTACTATAATTCACTAGGGCC
TCCATGTCGACTGATAACT
BO10293.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PA | 540 | CG6340-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
CG6340-PB | 1542 | CG6340-RB | 1..286 | 555..270 | 1430 | 100 | Minus |
CG6340-PC | 324 | CG6340-RC | 1..285 | 555..271 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RA | 1346 | CG6340-RA | 102..638 | 555..19 | 2685 | 100 | Minus |
CG6340-RB | 1814 | CG6340-RB | 102..387 | 555..270 | 1430 | 100 | Minus |
CG6340-RF | 2177 | CG6340-RF | 102..386 | 555..271 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15483198..15483672 | 493..19 | 2375 | 100 | Minus |
X | 23542271 | X | 15482475..15482538 | 555..492 | 320 | 100 | Minus |
X | 23542271 | X | 15482855..15482974 | 478..359 | 305 | 87 | Minus |
Blast to na_te.dros performed 2015-02-11 10:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 441..287 | 124 | 58.6 | Minus |
BO10293.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:36 Download gff for
BO10293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:03 Download gff for
BO10293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:21:42 Download gff for
BO10293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 96..638 | 19..563 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:19 Download gff for
BO10293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 96..638 | 19..563 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:19 Download gff for
BO10293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15482469..15482537 | 493..563 | 94 | -> | Minus |
X | 15483199..15483672 | 19..492 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:21:42 Download gff for
BO10293.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15376502..15376570 | 493..563 | 94 | -> | Minus |
arm_X | 15377232..15377705 | 19..492 | 100 | | Minus |
BO10293.5prime Sequence
569 bp (568 high quality bases) assembled on 2006-04-19
> BO10293.5prime
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGTAAAGACTTGCCGTTGCACCAAATCGATATTTACTTCCCATAATATAT
ACCAAATACCATATGCTATTGTACTCCATACGTATGTGTGTGTGTGTGTA
TCTGGGTTGGAGCGCAAGCGGATCTTTCATGTGCCGTTTCCTTCCGCTGC
CGCAAAGGGCGACGCCATCGCCGACTGCGCTGCCAGCAGCAGCACTTACA
GAGGCAGGCAAAATAATAGCACAGAGTCCGCTTTAAATCAAACGTCTAAT
GTAGCAAGCTTTCTAGACC
BO10293.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PA | 540 | CG6340-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
CG6340-PB | 1542 | CG6340-RB | 1..286 | 17..302 | 1430 | 100 | Plus |
CG6340-PC | 324 | CG6340-RC | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RA | 1346 | CG6340-RA | 102..638 | 17..553 | 2685 | 100 | Plus |
CG6340-RB | 1814 | CG6340-RB | 102..387 | 17..302 | 1430 | 100 | Plus |
CG6340-RF | 2177 | CG6340-RF | 102..386 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15483198..15483672 | 79..553 | 2375 | 100 | Plus |
X | 23542271 | X | 15482475..15482538 | 17..80 | 320 | 100 | Plus |
X | 23542271 | X | 15482855..15482974 | 94..213 | 305 | 87 | Plus |
Blast to na_te.dros performed 2015-02-13 09:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 131..285 | 124 | 58.6 | Plus |
BO10293.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:37 Download gff for
BO10293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:05 Download gff for
BO10293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:54 Download gff for
BO10293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 96..638 | 9..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:37 Download gff for
BO10293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 96..638 | 9..553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:37 Download gff for
BO10293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15482469..15482537 | 9..79 | 94 | -> | Plus |
X | 15483199..15483672 | 80..553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:54 Download gff for
BO10293.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15376502..15376570 | 9..79 | 94 | -> | Plus |
arm_X | 15377232..15377705 | 80..553 | 100 | | Plus |
BO10293.complete Sequence
571 bp (571 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631703
> BO10293.complete
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGTAAAGACTTGCCGTTGCACCAAATCGATATTTACTTCCCATAATATAT
ACCAAATACCATATGCTATTGTACTCCATACGTATGTGTGTGTGTGTGTA
TCTGGGTTGGAGCGCAAGCGGATCTTTCATGTGCCGTTTCCTTCCGCTGC
CGCAAAGGGCGACGCCATCGCCGACTGCGCTGCCAGCAGCAGCACTTACA
GAGGCAGGCAAAATAATAGCACAGAGTCCGCTTTAAATCAAACGTCTAAT
GTAGCAAGCTTTCTAGACCAT
BO10293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RA | 540 | CG6340-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
CG6340-RB | 1542 | CG6340-PB | 1..286 | 17..302 | 1430 | 100 | Plus |
CG6340-RF | 324 | CG6340-PF | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RA | 1346 | CG6340-RA | 102..638 | 17..553 | 2685 | 100 | Plus |
CG6340-RB | 1814 | CG6340-RB | 102..387 | 17..302 | 1430 | 100 | Plus |
CG6340-RF | 2177 | CG6340-RF | 102..386 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15483198..15483672 | 79..553 | 2375 | 100 | Plus |
X | 23542271 | X | 15482475..15482538 | 17..80 | 320 | 100 | Plus |
X | 23542271 | X | 15482855..15482974 | 94..213 | 305 | 87 | Plus |
Blast to na_te.dros performed 2014-11-27 07:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 131..285 | 124 | 58.6 | Plus |
BO10293.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:34 Download gff for
BO10293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:00 Download gff for
BO10293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 93..635 | 9..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:56 Download gff for
BO10293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 102..638 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:34 Download gff for
BO10293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 93..635 | 9..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:51 Download gff for
BO10293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RA | 102..638 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:51 Download gff for
BO10293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15482475..15482537 | 17..79 | 100 | -> | Plus |
X | 15483199..15483672 | 80..555 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:56 Download gff for
BO10293.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15376508..15376570 | 17..79 | 100 | -> | Plus |
arm_X | 15377232..15377705 | 80..555 | 99 | | Plus |
BO10293.pep Sequence
Translation from 16 to 571
> BO10293.pep
MEALVNYSSEDDQEDAGFQIRAPQQQQQLRHLPHAKSPKTTTDSLLKQKN
NNNYGSGNSPRGKEREREREREREKTKPMSQQQSHRSSSRGRIDEVKTCR
CTKSIFTSHNIYQIPYAIVLHTYVCVCVSGLERKRIFHVPFPSAAAKGDA
IADCAASSSTYRGRQNNSTESALNQTSNVASFLDH
BO10293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PA | 179 | CG6340-PA | 1..179 | 1..179 | 933 | 100 | Plus |
CG6340-PF | 107 | CG6340-PF | 1..98 | 1..98 | 500 | 99 | Plus |
CG6340-PB | 513 | CG6340-PB | 1..95 | 1..95 | 492 | 100 | Plus |