Clone BO10296 Report

Search the DGRC for BO10296

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptU4-U6-60K-RA
Protein status:BO10296.pep: validated full length
Sequenced Size:1693

Clone Sequence Records

BO10296.3prime Sequence

921 bp (823 high quality bases) assembled on 2006-04-19

> BO10296.3prime
ATGGTCTAGAAAGCTTGCGCTATCCGGCGACCACAGCTTAAATGTGCGGT
CAAATGAGGTCGTGGCTATATACTGCGAGTTGGGCGCGATGTCCACCGAT
ATGACCTTGTTGTCGTGGCCCTGCAGCGTCTTCAACGGCTGCCACGTCTT
GTTGGACCAGATCTTGGTGGTCGAGTCGTAGGAGCAGGTGACCAGGAAGC
TGCCGCACTCCTGCTGGTACTTCACGTCCGAAATCAGATTGGTGTGCGCA
GGAATGGTATAGACCGGCTGGCGTCGCCTCAGGTCCCAGATTTTACATGT
GTTGTCCTGGGACCCTGTTGCTATGTGGAATCCGTTTGGAGAAAAGTCCA
CGCCGAAAACGGCGCCCAAGTGTCCCTCCAGAAACATGATGCACCGCCCA
GTGCGCAGATCCCACACTCGTCCAAAGGCATCCAGACCGCCGGTGACCAG
GACACTGCCGTCGGAATGATAGCTAAGGCAGTGAACCGGCTTTGCGTGCC
CTTCCTGGTGAAGCACCTCTGTCTTTTGCTCCAGATCCCACAGCCGCCAG
CTAGAGTCGTAGCAGGCGGTGGCCAAGAAGCGGCCGGAAGGATGGAAGGC
TACCTTAGAGACGCGATGCGGCATGTGGCCGGTGATGTCGGCAATCGACT
CTTCGTTGTTGAAGCCCCACAGCTTGACGGCGCCATCGTGGCCACCGGAA
GCCATGGCCACCACGTTCTCCTCGTCTGCCTTAACTCCCGGCCGCAGAGC
CACTCCGCCCACATAGCTGGCATGTCCACGCAGCGTCTGCTTCAGCTCGC
AATCGGGCACGCTCCACAGCTTGCAGAGACCCGACCATGAGGAGGTCAGA
AGGAGTGAGGAGTCTTCACTGAAAGCAGCACTACTCACGGGCCGTGTGTC
ACCCACCTGGGAGCACAGTGA

BO10296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6322-PA 1662 CG6322-RA 758..1659 920..19 4485 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
U4-U6-60K-RA 2058 CG6322-RA 889..1790 920..19 4495 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17512123..17513024 19..920 4495 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 12:37:06 has no hits.

BO10296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:43 Download gff for BO10296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6322-PA 758..1662 16..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:11 Download gff for BO10296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6322-PA 758..1662 16..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:22:03 Download gff for BO10296.3prime
Subject Subject Range Query Range Percent Splice Strand
U4-U6-60K-RA 889..1790 19..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:09 Download gff for BO10296.3prime
Subject Subject Range Query Range Percent Splice Strand
U4-U6-60K-RA 889..1790 19..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:09 Download gff for BO10296.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17512123..17513024 19..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:22:03 Download gff for BO10296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17505223..17506124 19..920 99   Plus

BO10296.5prime Sequence

856 bp (780 high quality bases) assembled on 2006-04-19

> BO10296.5prime
GAAGTTATCAGTCGACATGTCCGATGACGACGATATACAGTACATTAAGC
GGCAGCGAACGCTGCACTATGGATCGCTCGAGGAATCGGAACGCAAGCGG
CAAAATGCCGCGGCGTCTGGGGCAGCAGCAACAACAACATCGGGAACGAC
GGCATCGTCTGGGGCAGGAACAACAACAACTGGAACAGGCGGGCAACTGG
AAGACATCGATTCCGATGAGGATTACGAGGAGTCCACGAAAAAGACAAGC
AACGCCAAGCAGGCCGGAGCACCACCACCCACAGCCGCTACTCTGGCCAA
CAAAATTGACGATGACTACTTCGATCTAGAGATGGAAATGGAGCGCGACA
AGGTGGCGCTCCTTGAGGAATTTGAGCGGAAAAAGCGAGCACGACAGATA
AATGTGTCCACAGACGACACGGAGATCAAGAGCAATCTGCGCCAGCTAAA
CGAACCCATTTGCTATTTTGGAGAAGGACCGGCGGAGCGAAGAAGACGTC
TTAAGGAACTCTTGGCTGGATTGGGCGAGAACGCCATCAACAAGAGGCAG
TATGAGGATGAGGAGCGCAAGCAGCAACAGCGGGAGCAGGATCAGGCCAC
CTGGTACCACGAGGGACCCGATAGTTTGCGTATCGCTCGACTCTGGCTGG
CGGATTATTCCCTGCCGCGCGCCAAGGATCGCTTGGTACGAGCACGTGAG
GCCCTTGAAGTGCCCAGCGCAGCACGTGCCGGCCGAATGGTGGAGATGCA
GAAGAAGCTCCAGTCGCTGGCTCCACTGTGCTCCCAGGTGGGTGACACAC
GGCCCGTGAGTAGTGCTGCCTTCAGTGAAGACTCCTCACTCCTTCTGACC
TCCTCA

BO10296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6322-PA 1662 CG6322-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
U4-U6-60K-RA 2058 CG6322-RA 132..971 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17512942..17513781 856..17 4200 100 Minus
Blast to na_te.dros performed 2015-02-12 07:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2428..2527 90..187 189 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2430 90..180 182 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6878 123..288 161 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1486..1611 92..216 159 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2395 122..187 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2422 93..187 145 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2462 123..188 141 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2411..2475 122..180 141 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2478..2667 123..313 141 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6945 122..286 138 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6823 122..188 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6805..6898 93..188 132 62.5 Plus
roo 9092 roo DM_ROO 9092bp 1069..1160 122..208 132 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2997 90..319 130 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2522 123..205 128 64.4 Plus
roo 9092 roo DM_ROO 9092bp 1060..1120 534..595 127 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6874 93..188 116 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2449 96..187 115 59.8 Plus
roo 9092 roo DM_ROO 9092bp 1127..1179 123..176 114 70.4 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7964..8027 123..186 113 64.1 Plus
TART-C 11124 TART-C TARTC 11124bp 9408..9471 123..186 113 64.1 Plus

BO10296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:44 Download gff for BO10296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6322-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:12 Download gff for BO10296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6322-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:11 Download gff for BO10296.5prime
Subject Subject Range Query Range Percent Splice Strand
U4-U6-60K-RA 132..970 17..855 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:39 Download gff for BO10296.5prime
Subject Subject Range Query Range Percent Splice Strand
U4-U6-60K-RA 132..970 17..855 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:39 Download gff for BO10296.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17512943..17513781 17..855 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:11 Download gff for BO10296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17506043..17506881 17..855 100   Minus

BO10296.complete Sequence

1693 bp (1693 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631704

> BO10296.complete
GAAGTTATCAGTCGACATGTCCGATGACGACGATATACAGTACATTAAGC
GGCAGCGAACGCTGCACTATGGATCGCTCGAGGAATCGGAACGCAAGCGG
CAAAATGCCGCGGCGTCTGGGGCAGCAGCAACAACAACATCGGGAACGAC
GGCATCGTCTGGGGCAGGAACAACAACAACTGGAACAGGCGGGCAACTGG
AAGACATCGATTCCGATGAGGATTACGAGGAGTCCACGAAAAAGACAAGC
AACGCCAAGCAGGCCGGAGCACCACCACCCACAGCCGCTACTCTGGCCAA
CAAAATTGACGATGACTACTTCGATCTAGAGATGGAAATGGAGCGCGACA
AGGTGGCGCTCCTTGAGGAATTTGAGCGGAAAAAGCGAGCACGACAGATA
AATGTGTCCACAGACGACACGGAGATCAAGAGCAATCTGCGCCAGCTAAA
CGAACCCATTTGCTATTTTGGAGAAGGACCGGCGGAGCGAAGAAGACGTC
TTAAGGAACTCTTGGCTGGATTGGGCGAGAACGCCATCAACAAGAGGCAG
TATGAGGATGAGGAGCGCAAGCAGCAACAGCGGGAGCAGGATCAGGCCAC
CTGGTACCACGAGGGACCCGATAGTTTGCGTATCGCTCGACTCTGGCTGG
CGGATTATTCCCTGCCGCGCGCCAAGGATCGCTTGGTACGAGCACGTGAG
GCCCTTGAAGTGCCCAGCGCAGCACGTGCCGGCCGAATGGTGGAGATGCA
GAAGAAGCTCCAGTCGCTGGCTCCACTGTGCTCCCAGGTGGGTGACACAC
GGCCCGTGAGTAGTGCTGCCTTCAGTGAAGACTCCTCACTCCTTCTGACC
TCCTCATGGTCGGGTCTCTGCAAGCTGTGGAGCGTGCCCGATTGCGAGCT
GAAGCAGACGCTGCGTGGACATGCCAGCTATGTGGGCGGAGTGGCTCTGC
GGCCGGGAGTTAAGGCAGACGAGGAGAACGTGGTGGCCATGGCTTCCGGT
GGCCACGATGGCGCCGTCAAGCTGTGGGGCTTCAACAACGAAGAGTCGAT
TGCCGACATCACCGGCCACATGCCGCATCGCGTCTCTAAGGTAGCCTTCC
ATCCTTCCGGCCGCTTCTTGGCCACCGCCTGCTACGACTCTAGCTGGCGG
CTGTGGGATCTGGAGCAAAAGACAGAGGTGCTTCACCAGGAAGGGCACGC
AAAGCCGGTTCACTGCCTTAGCTATCATTCCGACGGCAGTGTCCTGGTCA
CCGGCGGTCTGGATGCCTTTGGACGAGTGTGGGATCTGCGCACTGGGCGG
TGCATCATGTTTCTGGAGGGACACTTGGGCGCCGTTTTCGGCGTGGACTT
TTCTCCAAACGGATTCCACATAGCAACAGGGTCCCAGGACAACACATGTA
AAATCTGGGACCTGAGGCGACGCCAGCCGGTCTATACCATTCCTGCGCAC
ACCAATCTGATTTCGGACGTGAAGTACCAGCAGGAGTGCGGCAGCTTCCT
GGTCACCTGCTCCTACGACTCGACCACCAAGATCTGGTCCAACAAGACGT
GGCAGCCGTTGAAGACGCTGCAGGGCCACGACAACAAGGTCATATCGGTG
GACATCGCGCCCAACTCGCAGTATATAGCCACGACCTCATTTGACCGCAC
ATTTAAGCTGTGGTCGCCGGATAGCGCAAGCTTTCTAGACCAT

BO10296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
U4-U6-60K-RA 1662 CG6322-PA 1..1659 17..1675 8295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
U4-U6-60K-RA 2058 CG6322-RA 132..1790 17..1675 8295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17512123..17513781 1675..17 8295 100 Minus
Blast to na_te.dros performed 2014-11-27 21:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2428..2527 90..187 189 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2430 90..180 182 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6878 123..288 161 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1486..1611 92..216 159 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2395 122..187 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2422 93..187 145 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2462 123..188 141 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2411..2475 122..180 141 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6945 122..286 138 57.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6823 122..188 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6805..6898 93..188 132 62.5 Plus
roo 9092 roo DM_ROO 9092bp 1069..1160 122..208 132 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2997 90..319 130 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2522 123..205 128 64.4 Plus
roo 9092 roo DM_ROO 9092bp 1060..1120 534..595 127 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6874 93..188 116 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2449 96..187 115 59.8 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7964..8027 123..186 113 64.1 Plus
TART-C 11124 TART-C TARTC 11124bp 9408..9471 123..186 113 64.1 Plus

BO10296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:06 Download gff for BO10296.complete
Subject Subject Range Query Range Percent Splice Strand
CG6322-RA 1..1662 17..1678 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:39 Download gff for BO10296.complete
Subject Subject Range Query Range Percent Splice Strand
CG6322-RA 131..1789 17..1675 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:06 Download gff for BO10296.complete
Subject Subject Range Query Range Percent Splice Strand
U4-U6-60K-RA 132..1790 17..1677 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:06 Download gff for BO10296.complete
Subject Subject Range Query Range Percent Splice Strand
CG6322-RA 131..1789 17..1675 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:14 Download gff for BO10296.complete
Subject Subject Range Query Range Percent Splice Strand
U4-U6-60K-RA 132..1790 17..1677 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:14 Download gff for BO10296.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17512120..17513781 17..1677 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:06 Download gff for BO10296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17505220..17506881 17..1677 99   Minus

BO10296.pep Sequence

Translation from 16 to 1693

> BO10296.pep
MSDDDDIQYIKRQRTLHYGSLEESERKRQNAAASGAAATTTSGTTASSGA
GTTTTGTGGQLEDIDSDEDYEESTKKTSNAKQAGAPPPTAATLANKIDDD
YFDLEMEMERDKVALLEEFERKKRARQINVSTDDTEIKSNLRQLNEPICY
FGEGPAERRRRLKELLAGLGENAINKRQYEDEERKQQQREQDQATWYHEG
PDSLRIARLWLADYSLPRAKDRLVRAREALEVPSAARAGRMVEMQKKLQS
LAPLCSQVGDTRPVSSAAFSEDSSLLLTSSWSGLCKLWSVPDCELKQTLR
GHASYVGGVALRPGVKADEENVVAMASGGHDGAVKLWGFNNEESIADITG
HMPHRVSKVAFHPSGRFLATACYDSSWRLWDLEQKTEVLHQEGHAKPVHC
LSYHSDGSVLVTGGLDAFGRVWDLRTGRCIMFLEGHLGAVFGVDFSPNGF
HIATGSQDNTCKIWDLRRRQPVYTIPAHTNLISDVKYQQECGSFLVTCSY
DSTTKIWSNKTWQPLKTLQGHDNKVISVDIAPNSQYIATTSFDRTFKLWS
PDSASFLDH

BO10296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
U4-U6-60K-PA 553 CG6322-PA 1..553 1..553 2915 100 Plus
wds-PB 361 CG17437-PB 70..361 259..553 354 28 Plus
wds-PA 361 CG17437-PA 70..361 259..553 354 28 Plus
CG7568-PD 467 CG7568-PD 120..428 263..553 346 28.3 Plus
CG7568-PE 482 CG7568-PE 120..428 263..553 346 28.3 Plus
wds-PB 361 CG17437-PB 48..317 279..553 310 29 Plus
wds-PA 361 CG17437-PA 48..317 279..553 310 29 Plus
CG7568-PD 467 CG7568-PD 270..466 264..464 233 28.4 Plus
wds-PB 361 CG17437-PB 70..233 393..557 201 25.5 Plus
wds-PA 361 CG17437-PA 70..233 393..557 201 25.5 Plus
CG7568-PD 467 CG7568-PD 60..300 342..555 159 26.6 Plus