Clone Sequence Records
BO10306.3prime Sequence
935 bp (756 high quality bases) assembled on 2006-04-19
> BO10306.3prime
ATGGTCTAGAAAGCTTGCGTCTTCGTCCTGCAGATCTTCCAGGACGTCCA
CATCGTATAGGTTCACCAGCAGCTGGCCGTACTGGCTGCTGTGCTGGAGC
GCCTCCTCCGGAGCGAAATACTTCTCGCTCTGCTCCCGCAAGCGGTGCAG
CTGCGTGGTGCCATCGATGTGAACTCCATTGGCTATCAGTTGCTGCATGT
AGTTGGCATCGATGTGGGCATTGCGGGTATCGTTGGGTAGTTTTACTGGC
AGCTTGCGGGGACTGGAGCTCTGCAGCAGGAGCACAATCTGCTCGGGAGG
CAGGCACAGCTCGCAGTTCCAGCCGCCGTAGTGGTTGAGATCACCCAGTG
TGCTGCTCGCCAGCCGGTGCAGGCGGTGAGCATCCAGTTGGGCACTGTGC
AGGTGCCCCAAGGAACTTATCACCCCATTTAGGAGGGTCTTCTTCGGATG
CTGCCAGTAGAATCCATATACATTGTACTTCAAACGAAATTTCAGCGGCA
GCACATCCTTGGCATAGTACTTCAGAAACTTGAGTGCTGCTGGCGCGTAG
ACCGTTCCACTGTCCCCGTGCAGCAGCAGGTCCTGTGCCTGCATTTGGAC
ACCACACTGCTGCCACAGCTGCCGCCTAAAGTGACTGTAGGCCATTGAGC
TGGTGCAGTTGCTCTCGGAGGAGCAGCGTAGTAGCGTATAGCTCGTTTGG
CTGCCCAGCATGCTCTCCAGACTCCGCTCCTTGCTGCCGTTGCTCACATA
GTATATGAGAAAGTAGTCCACAACCTCGATGAGCGCTCGAATTTGCAGCT
CCCAGAGCTCCAGACTTAGGTGGTCCCAGGCGCCCAATTCAAGCATATAG
AACAGGCGGTGCAGTGAAGAAGAACTGGCCTCGACCAGTTGAAGCGGTGT
GCTACCGCCTCGTTTACTGGCCCGATTGGACGTCA
BO10306.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-PA | 1464 | CG31849-RA | 545..1461 | 935..19 | 4560 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 2199 | CG31849-RA | 689..1605 | 935..19 | 4570 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13180992..13181908 | 19..935 | 4570 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:32:38 has no hits.
BO10306.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:50 Download gff for
BO10306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 546..1464 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:23 Download gff for
BO10306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 546..1464 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:21:43 Download gff for
BO10306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 690..1610 | 12..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:01 Download gff for
BO10306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 690..1610 | 12..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:01 Download gff for
BO10306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13180987..13181907 | 12..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:21:43 Download gff for
BO10306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13180987..13181907 | 12..934 | 99 | | Plus |
BO10306.5prime Sequence
931 bp (829 high quality bases) assembled on 2006-04-19
> BO10306.5prime
GAAGTTATCAGTCGTCATGGTGAGAAGCACATTCCTGGCCACCTACAACC
AGACACCGGTAGCCGGCGTTGGACGGCTGGCCATCACCAAGAAGCTGGTG
CTCTGGTTGGTGCTGGTGCTGCAGGTGGGCTTCATCGGCTGCATATGGCT
GCTGCAGATGAGCCGTGGCCAGGAGTCGCAGCAGCGCAGTGCAATGGACC
AACTTGGCGGACGGGTCAACTTCGTGGCCAGCGGTGAAGCCCCTATGGAG
AAGATGGCACTTGTGGGCGGAACCCACTGTCCGCATCTGCAGGAGAATGT
CAACCGCTACGACAAGGACTTTTATCAAATGAAACCGGAACGACTGAACG
AATCCCACCTGCCCGACTACAATGTGCCCGCCTATGTGGACGCGGAGATG
GGTCTAACCCCAAACCTCTGGTGCTATCGCGAGGGGACCATCAACGAGAG
CCAGCGGCTCAACGATGTGGACTATCTGATGGCGCCGCCTCAATGCAGAT
GTGAAAGTGGCTGGCACGGCAGAGATTGCGGCCAGCCGGAGATCATATGG
CGAGCCCTGATGACGTCCAATCGGGCCAGTAAACGAGGCGGTAGCACACC
GCTTCAACTGGTCGAGGCCAGTTCTTCTTCACTGCACCGCCTGTTCTATA
TGCTTGAATTGGGCGCCTGGGACCACCTAAGTCTGGAGCTCTTGGAGCTG
CAAATTCGAGCGCTCATCGAGGTTGTGGACTACTTTCTCATATACTATGT
GAGCAACGGCAGCAAGGAGCGGAGTCTGGAGAGCATGCTGGGCAGCCAAA
CGAGCTATACGCTACTACGCTGCTCCTCCGAGAGNCACTGCACCAGCTCA
ATGGCCTACAGTCACTTTAGGCGGCAGCTGTGGCAGCAGTGTGGTGTCCA
ATGCANGCACAGGACCTGCTGCTGCACGGGG
BO10306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-PA | 1464 | CG31849-RA | 1..885 | 17..901 | 4381 | 99.7 | Plus |
| CG31849-PA | 1464 | CG31849-RA | 885..916 | 900..931 | 141 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 2199 | CG31849-RA | 144..1060 | 16..931 | 4523 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13181537..13182453 | 931..16 | 4498 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:22:09 has no hits.
BO10306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:51 Download gff for
BO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:24 Download gff for
BO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:13 Download gff for
BO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 137..1060 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:13 Download gff for
BO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 137..1060 | 9..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:13 Download gff for
BO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13181537..13182460 | 9..931 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:13 Download gff for
BO10306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13181537..13182460 | 9..931 | 99 | | Minus |
BO10306.complete Sequence
1495 bp assembled on 2008-08-15
GenBank Submission: FJ631705
> BO10306.complete
GAAGTTATCAGTCGTCATGGTGAGAAGCACATTCCTGGCCACCTACAACC
AGACACCGGTAGCCGGCGTTGGACGGCTGGCCATCACCAAGAAGCTGGTG
CTCTGGTTGGTGCTGGTGCTGCAGGTGGGCTTCATCGGCTGCATATGGCT
GCTGCAGATGAGCCGTGGCCAGGAGTCGCAGCAGCGCAGTGCAATGGACC
AACTTGGCGGACGGGTCAACTTCGTGGCCAGCGGTGAAGCCCCTATGGAG
AAGATGGCACTTGTGGGCGGAACCCACTGTCCGCATCTGCAGGAGAATGT
CAACCGCTACGACAAGGACTTTTATCAAATGAAACCGGAACGACTGAACG
AATCCCACCTGCCCGACTACAATGTGCCCGCCTATGTGGACGCGGAGATG
GGTCTAACCCCAAACCTCTGGTGCTATCGCGAGGGGACCATCAACGAGAG
CCAGCGGCTCAACGATGTGGACTATCTGATGGCGCCGCCTCAATGCAGAT
GTGAAAGTGGCTGGCACGGCAGAGATTGCGGCCAGCCGGAGATCATATGG
CGAGCCCTGATGACGTCCAATCGGGCCAGTAAACGAGGCGGTAGCACACC
GCTTCAACTGGTCGAGGCCAGTTCTTCTTCACTGCACCGCCTGTTCTATA
TGCTTGAATTGGGCGCCTGGGACCACCTAAGTCTGGAGCTCTTGGAGCTG
CAAATTCGAGCGCTCATCGAGGTTGTGGACTACTTTCTCATATACTATGT
GAGCAACGGCAGCAAGGAGCGGAGTCTGGAGAGCATGCTGGGCAGCCAAA
CGAGCTATACGCTACTACGCTGCTCCTCCGAGAGCAACTGCACCAGCTCA
ATGGCCTACAGTCACTTTAGGCGGCAGCTGTGGCAGCAGTGTGGTGTCCA
AATGCAGGCACAGGACCTGCTGCTGCACGGGGACAGTGGAACGGTCTACG
CGCCAGCAGCACTCAAGTTTCTGAAGTACTATGCCAAGGATGTGCTGCCG
CTGAAATTTCGTTTGAAGTACAATGTATATGGATTCTACTGGCAGCATCC
GAAGAAGACCCTCCTAAATGGGGTGATAAGTTCCTTGGGGCACCTGCACA
GTGCCCAACTGGATGCTCACCGCCTGCACCGGCTGGCGAGCAGCACACTG
GGTGATCTCAACCACTACGGCGGCTGGAACTGCGAGCTGTGCCTGCCTCC
CGAGCAGATTGTGCTCCTGCTGCAGAGCTCCAGTCCCCGCAAGCTGCCAG
TAAAACTACCCAACGATACCCGCAATGCCCACATCGATGCCAACTACATG
CAGCAACTGATAGCCAATGGAGTTCACATCGATGGCACCACGCAGCTGCA
CCGCTTGCGGGAGCAGAGCGAGAAGTATTTCGCTCCGGAGGAGGCGCTCC
AGCACAGCAGCCAGTACGGCCAGCTGCTGGTGAACCTATACGATGTGGAC
GTCCTGGAAGATCTGCAGGACGAAGACGCAAGCTTTCTAGACCAT
BO10306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 1464 | CG31849-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-RA | 2199 | CG31849-RA | 144..1605 | 16..1477 | 7310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13180992..13182453 | 1477..16 | 7310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:33:10 has no hits.
BO10306.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:55 Download gff for
BO10306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 134..1607 | 9..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:49 Download gff for
BO10306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 145..1605 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:31 Download gff for
BO10306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 142..1602 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:12 Download gff for
BO10306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31849-RA | 145..1605 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:12 Download gff for
BO10306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13180990..13182452 | 17..1479 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:49 Download gff for
BO10306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13180990..13182452 | 17..1479 | 99 | | Minus |
BO10306.pep Sequence
Translation from 16 to 1495
> BO10306.pep
MVRSTFLATYNQTPVAGVGRLAITKKLVLWLVLVLQVGFIGCIWLLQMSR
GQESQQRSAMDQLGGRVNFVASGEAPMEKMALVGGTHCPHLQENVNRYDK
DFYQMKPERLNESHLPDYNVPAYVDAEMGLTPNLWCYREGTINESQRLND
VDYLMAPPQCRCESGWHGRDCGQPEIIWRALMTSNRASKRGGSTPLQLVE
ASSSSLHRLFYMLELGAWDHLSLELLELQIRALIEVVDYFLIYYVSNGSK
ERSLESMLGSQTSYTLLRCSSESNCTSSMAYSHFRRQLWQQCGVQMQAQD
LLLHGDSGTVYAPAALKFLKYYAKDVLPLKFRLKYNVYGFYWQHPKKTLL
NGVISSLGHLHSAQLDAHRLHRLASSTLGDLNHYGGWNCELCLPPEQIVL
LLQSSSPRKLPVKLPNDTRNAHIDANYMQQLIANGVHIDGTTQLHRLREQ
SEKYFAPEEALQHSSQYGQLLVNLYDVDVLEDLQDEDASFLDH
BO10306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31849-PA | 487 | CG31849-PA | 1..487 | 1..487 | 2580 | 100 | Plus |
