Clone Sequence Records
BO10307.3prime Sequence
925 bp (860 high quality bases) assembled on 2006-04-19
> BO10307.3prime
ATGGTCTAGAAAGCTTGCATTCTGCTTCGCCGTGCCCGCGGCCGTGGTGG
CTGCGGTGGCAGCCGCTATGGCACTGCTGCCCGTTATCGAGCCCAGCCGG
GAGAGCGATGGCTCCCGCTTGGGTGGCACGATCGGCTTGGTTGGTATGGG
GGGCGGTGCTCCGCGAGCGCCCGCTGGCGGCACCGTAACCGGCGGCACGG
CAATGGGAACGGGATGAGGATGCGGTGTTGTTGTCTGGTCGAGGGCAGCT
GCCGCAGCCAGTGCGGCATACTTGCCGCCGGGCGCCCGCTGGATGGTGGC
CGTCGGCTGCATCTTTGCCGGAGAGGGTGAGGGTGGCGCCACCATGGGCA
CGGTGACCGTAGCAGCCGTCTCAACTGATGCAGCTACTGCTGCAGCTGTT
GCTGCTACTCCAATGCTGCCGCTCGAGTTGCTGTTGCTGCTGGTGGTGGT
GTTATTCGTGGTGGTTGTGATGGTGGTAGTGTGGTTGAGCACGGCAGTTA
GTGGTGCTATTGCTGCTGTGGCCGTGCCCGTGGGCGCCGTTGCGATTCCA
GCGCTCCGGATGTTCTGGCCCGGCGCAATGGAGCGGGCGATGCCGGTCTG
TGGTCCCGAGACCGGCATGCTGCTAACCGTGGCTGTTGGCTGCACGATCT
TGGCGATGTTCACCATGGGGGGCGTGGCACAGGCGTCGTCGCTGAACTGT
CGCGCCTTGGCGGCGGCCACGGATGAGCCGCTGCCACCCAGTTGCTGCTG
CTTTTTCAGAGCCTCGTGCTCGCTCCGTAGGGCGTTGAGTTCCTGCTCCA
GCTCCTTGACCCGGAGTTCCTCCTTGGCTAGTTTGGCAAACAGGACTTTA
CGCTCCTGCTCCATGGCATGCGTTTGCTTTCTCAGTTCCTCCTCCATGCG
CAGCGACTTTTTGCTCTCCTCCTCG
BO10307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-PA | 1830 | CG10915-RA | 967..1827 | 879..19 | 4305 | 100 | Minus |
| CG10915-PA | 1830 | CG10915-RA | 921..963 | 925..883 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-RB | 3360 | CG10915-RB | 1230..2136 | 925..19 | 4490 | 99.8 | Minus |
| CG10915-RA | 2823 | CG10915-RA | 1230..2136 | 925..19 | 4490 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18162851..18163522 | 690..19 | 3360 | 100 | Minus |
| 2R | 25286936 | 2R | 18162206..18162328 | 812..690 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 18162025..18162139 | 925..811 | 530 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:50 has no hits.
BO10307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:52 Download gff for
BO10307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-PA | 921..1830 | 18..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:26 Download gff for
BO10307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-PA | 921..1830 | 18..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:04 Download gff for
BO10307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 1230..2136 | 19..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:24 Download gff for
BO10307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 1230..2136 | 19..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:24 Download gff for
BO10307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18162025..18162138 | 812..925 | 98 | -> | Minus |
| 2R | 18162207..18162328 | 690..811 | 100 | -> | Minus |
| 2R | 18162852..18163522 | 19..689 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:04 Download gff for
BO10307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14049530..14049643 | 812..925 | 98 | -> | Minus |
| arm_2R | 14049712..14049833 | 690..811 | 100 | -> | Minus |
| arm_2R | 14050357..14051027 | 19..689 | 100 | | Minus |
BO10307.5prime Sequence
860 bp (832 high quality bases) assembled on 2006-04-19
> BO10307.5prime
GAAGTTATCAGTCGACATGGAGCAGAACTCGAACAGCAGCGTTGCGGATA
CGTTTGCGGAGGCACCAGCGACGGACGCGGATTACGGCACTGAGAACTGT
TCCGGATCCGGAATGTCGGTCGGCGACACCGTGAGCGCCAACCACGAGTT
CCAGACCATGAAACCGGGTCCCGGTGTGGTGCACAAGGTGATGCCGGTGG
CAAATAGCGCCAGCAGTGCTACCGCAACCAACGGACGCACGCGCTCCGAG
ATGCCGCACAGCGAGCTGGTGAAGATGCTGTACTACCTGGAGGGCGAGCT
GCAGGCACGGGATGTCTGCATAGCCGCCCTGAGGAACGAGCGGGTAAAGC
AGCTCATTGCACAGCTGCGCACCAAGCGACTGCAGCCGAACGATCCGTAT
GCGGCCATATTCCGGGACAAGATCGCACTCAATGGCAATCTGATATCAAG
GGAATCGTCTACGCAGGCGGCGCAAGCGGAGATGGAGGTGCGCCAGATCA
TTGAGCAGCAAATGGAGCAGCAGTATCAGATGGTTAGCAAGCAGAGGGCC
ACGCATGTGCGTATGGTCAACATATTGACCGAATCGCTGGAAAACAATCA
GCGTATGCTCCAGGAGCTGGAGGAGGAGAAGCGCAAGCACGAGAACACCA
CGGCTCAGGGTGACGACATCACCTACGGCCTGGAATTGGAGCGCAACAAG
CTGAAGCAGGACCTAGAGGAGGAGCGCGCTCAGGTGGCCAAAATGGAGAA
GGATCTGAAGAAGCTGCAGGAGACGCTCGAGTACGAGCGCAATCGACAAA
AGCAGATTGTGCTGCTGTTGATTGCGGAGCGCAAAAAGATCCTCATGAAG
TATATTGAAG
BO10307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-PA | 1830 | CG10915-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-RB | 3360 | CG10915-RB | 310..1153 | 17..860 | 4220 | 100 | Plus |
| CG10915-RA | 2823 | CG10915-RA | 310..1153 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18161029..18161872 | 17..860 | 4220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:29:48 has no hits.
BO10307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:53 Download gff for
BO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:27 Download gff for
BO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:04 Download gff for
BO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 301..1153 | 8..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:01 Download gff for
BO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 301..1153 | 8..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:01 Download gff for
BO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18161020..18161872 | 8..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:04 Download gff for
BO10307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14048525..14049377 | 8..860 | 99 | | Plus |
BO10307.complete Sequence
1861 bp (1861 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631706
> BO10307.complete
GAAGTTATCAGTCGACATGGAGCAGAACTCGAACAGCAGCGTTGCGGATA
CGTTTGCGGAGGCACCAGCGACGGACGCGGATTACGGCACTGAGAACTGT
TCCGGATCCGGAATGTCGGTCGGCGACACCGTGAGCGCCAACCACGAGTT
CCAGACCATGAAACCGGGTCCCGGTGTGGTGCACAAGGTGATGCCGGTGG
CAAATAGCGCCAGCAGTGCTACCGCAACCAACGGACGCACGCGCTCCGAG
ATGCCGCACAGCGAGCTGGTGAAGATGCTGTACTACCTGGAGGGCGAGCT
GCAGGCACGGGATGTCTGCATAGCCGCCCTGAGGAACGAGCGGGTAAAGC
AGCTCATTGCACAGCTGCGCACCAAGCGACTGCAGCCGAACGATCCGTAT
GCGGCCATATTCCGGGACAAGATCGCACTCAATGGCAATCTGATATCAAG
GGAATCGTCTACGCAGGCGGCGCAAGCGGAGATGGAGGTGCGCCAGATCA
TTGAGCAGCAAATGGAGCAGCAGTATCAGATGGTTAGCAAGCAGAGGGCC
ACGCATGTGCGTATGGTCAACATATTGACCGAATCGCTGGAAAACAATCA
GCGTATGCTCCAGGAGCTGGAGGAGGAGAAGCGCAAGCACGAGAACACCA
CGGCTCAGGGTGACGACATCACCTACGGCCTGGAATTGGAGCGCAACAAG
CTGAAGCAGGACCTAGAGGAGGAGCGCGCTCAGGTGGCCAAAATGGAGAA
GGATCTGAAGAAGCTGCAGGAGACGCTCGAGTACGAGCGCAATCGACAAA
AGCAGATTGTGCTGCTGTTGATTGCGGAGCGCAAAAAGATCCTCATGAAG
TATATTGAAGAGGGGAAACGATCGGAGGATCTGGCCCAAATTCTGGCCGA
GGAGAAGCAGCGCTCGGATACCATTGCCGAGGGTCTCGAGGAGGAGAGCA
AAAAGTCGCTGCGCATGGAGGAGGAACTGGAGAAGCAAACGCATGCCATG
GAGCAGGAGCGTAAAGTCCTGTTTGCCAAACTAGCCAAGGAGGAACTCCG
GGTCAAGGAGCTGGAGCAGGAACTCAACGCCCTACGGAGCGAGCACGAGG
CTCTGAAAAAGCAGCAGCAACTGGGTGGCAGCGGCTCATCCGTGGCCGCC
GCCAAGGCGCGACAGTTCAGCGACGACGCCTGTGCCACGCCCCCCATGGT
GAACATCGCCAAGATCGTGCAGCCAACAGCCACGGTTAGCAGCATGCCGG
TCTCGGGACCACAGACCGGCATCGCCCGCTCCATTGCGCCGGGCCAGAAC
ATCCGGAGCGCTGGAATCGCAACGGCGCCCACGGGCACGGCCACAGCAGC
AATAGCACCACTAACTGCCGTGCTCAACCACACTACCACCATCACAACCA
CCACGAATAACACCACCACCAGCAGCAACAGCAACTCGAGCGGCAGCATT
GGAGTAGCAGCAACAGCTGCAGCAGTAGCTGCATCAGTTGAGACGGCTGC
TACGGTCACCGTGCCCATGGTGGCGCCACCCTCACCCTCTCCGGCAAAGA
TGCAGCCGACGGCCACCATCCAGCGGGCGCCCGGCGGCAAGTATGCCGCA
CTGGCTGCGGCAGCTGCCCTCGACCAGACAACAACACCGCATCCTCATCC
CGTTCCCATTGCCGTGCCGCCGGTTACGGTGCCGCCAGCGGGCGCTCGCG
GAGCACCGCCCCCCATACCAACCAAGCCGATCGTGCCACCCAAGCGGGAG
CCATCGCTCTCCCGGCTGGGCTCGATAACGGGCAGCAGTGCCATAGCGGC
TGCCACCGCAGCCACCACGGCCGCGGGCACGGCGAAGCAGAATGCAAGCT
TTCTAGACCAT
BO10307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-RB | 1830 | CG10915-PB | 1..1827 | 17..1843 | 9135 | 100 | Plus |
| CG10915-RA | 1830 | CG10915-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-RB | 3360 | CG10915-RB | 310..2136 | 17..1843 | 9135 | 100 | Plus |
| CG10915-RA | 2823 | CG10915-RA | 310..2136 | 17..1843 | 9135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18161029..18161876 | 17..864 | 4240 | 100 | Plus |
| 2R | 25286936 | 2R | 18162851..18163522 | 1172..1843 | 3360 | 100 | Plus |
| 2R | 25286936 | 2R | 18161951..18162139 | 863..1051 | 945 | 100 | Plus |
| 2R | 25286936 | 2R | 18162206..18162328 | 1050..1172 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:22:59 has no hits.
BO10307.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:07 Download gff for
BO10307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 1..1830 | 17..1844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:41 Download gff for
BO10307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 304..2139 | 8..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:37 Download gff for
BO10307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 310..2136 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:07 Download gff for
BO10307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 304..2139 | 8..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:31 Download gff for
BO10307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10915-RA | 310..2136 | 17..1845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:31 Download gff for
BO10307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18162207..18162328 | 1051..1172 | 100 | -> | Plus |
| 2R | 18162852..18163522 | 1173..1845 | 99 | | Plus |
| 2R | 18161029..18161875 | 17..863 | 100 | -> | Plus |
| 2R | 18161952..18162138 | 864..1050 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:37 Download gff for
BO10307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14049457..14049643 | 864..1050 | 100 | -> | Plus |
| arm_2R | 14048534..14049380 | 17..863 | 100 | -> | Plus |
| arm_2R | 14049712..14049833 | 1051..1172 | 100 | -> | Plus |
| arm_2R | 14050357..14051027 | 1173..1845 | 99 | | Plus |
BO10307.pep Sequence
Translation from 16 to 1861
> BO10307.pep
MEQNSNSSVADTFAEAPATDADYGTENCSGSGMSVGDTVSANHEFQTMKP
GPGVVHKVMPVANSASSATATNGRTRSEMPHSELVKMLYYLEGELQARDV
CIAALRNERVKQLIAQLRTKRLQPNDPYAAIFRDKIALNGNLISRESSTQ
AAQAEMEVRQIIEQQMEQQYQMVSKQRATHVRMVNILTESLENNQRMLQE
LEEEKRKHENTTAQGDDITYGLELERNKLKQDLEEERAQVAKMEKDLKKL
QETLEYERNRQKQIVLLLIAERKKILMKYIEEGKRSEDLAQILAEEKQRS
DTIAEGLEEESKKSLRMEEELEKQTHAMEQERKVLFAKLAKEELRVKELE
QELNALRSEHEALKKQQQLGGSGSSVAAAKARQFSDDACATPPMVNIAKI
VQPTATVSSMPVSGPQTGIARSIAPGQNIRSAGIATAPTGTATAAIAPLT
AVLNHTTTITTTTNNTTTSSNSNSSGSIGVAATAAAVAASVETAATVTVP
MVAPPSPSPAKMQPTATIQRAPGGKYAALAAAAALDQTTTPHPHPVPIAV
PPVTVPPAGARGAPPPIPTKPIVPPKREPSLSRLGSITGSSAIAAATAAT
TAAGTAKQNASFLDH
BO10307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10915-PB | 609 | CG10915-PB | 1..609 | 1..609 | 3019 | 100 | Plus |
| CG10915-PA | 609 | CG10915-PA | 1..609 | 1..609 | 3019 | 100 | Plus |
| ph-p-PD | 1346 | CG18412-PD | 517..1015 | 139..611 | 171 | 18.6 | Plus |
| ph-p-PC | 1346 | CG18412-PC | 517..1015 | 139..611 | 171 | 18.6 | Plus |
| ph-p-PB | 1346 | CG18412-PB | 517..1015 | 139..611 | 171 | 18.6 | Plus |
