Clone BO10308 Report

Search the DGRC for BO10308

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG8003-RA
Protein status:BO10308.pep: validated full length
Sequenced Size:1255

Clone Sequence Records

BO10308.3prime Sequence

963 bp (932 high quality bases) assembled on 2006-04-19

> BO10308.3prime
ATGGTCTAGAAAGCTTGCCGCAGTCAGTTTGGACAGTTCCTCGCGCAGCT
CGGCCGTGTCAATGGCTCCCTTCGCTTGCGATTGCGGCTGGGCTTGGGCT
TGGGCTTGGGATTGGGCCAGGAGGCGGGCACAGTTCTTCTTGTGCATGAA
CCAATGCAGCCGCTGGCATTCGCGATCGCAATACTGCACCGCCTTGCACT
TGGAGCACTTCTTGTCCGGTTTCTCGGCGCCGCAGGTGCTGCAGTAGTTG
CCCTCGTCCGTAATCCACCTCATCCCATTGATGGCATTTCGCAGGACAGT
CAGTGCTGGTGGGGCATCCTTGGCGCCAAATTGCGTTGCGATTTGCCGGA
AGATGGTGCACTCTCTCACGGGAAACTCCCTGGCACATTCGCGCAACGTG
TATTCCACATAGTCCAGCTGGCCCAGCTTGTTCTCCTTGAGCACCCGCTT
CACAAACATCTCGATGAAATCGTTCTTGTTCGCATCGCCCGCCTCCTCGC
CACTTTTCTCCTTGTGCTGCGCCTTGAATTGCTCCTCGCAGCGTATTAGT
TCGGCCAAAATCCAGCCCTGATAATGGAACTTGAAGGCCAGCAGCTCGTT
GAGGTCATGCGACTTCTGCATCTCCTTTTCGCACATCAAAGCCAGCGTCT
TGCGCAGACTGGACAGGATCCTAAGCAATCCCAAGGACTGCACATTCAGG
GCAATCCTCACGGGATGCAGGTTGATTTCGGTGACAAAGGCGTGGAACGA
TTTGAGTAAGCTGGGTGGTATATGCGGCTCCGTCTGCTGGCCATGCACTT
GGGTGTAGTACTCCAAACTCGACTGGGTCACATAGTTGTTGATGGTCTCC
ACGCANGCGTGGTTGCCCACAAAGGCGGCCATTTGGGCGGCGGTCCTGTT
GACACTATTGATGCTACCCGGCTTGATGCCAGCATCCCAAAGAGCCGGCA
CACATGTGTATTG

BO10308.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PA 1224 CG8003-RA 297..1221 943..19 4581 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1555 CG8003-RB 376..1321 963..19 4679 99.7 Minus
CG8003-RA 1368 CG8003-RA 376..1321 963..19 4679 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10661918..10662624 963..258 3459 99.6 Minus
3L 28110227 3L 10662683..10662923 259..19 1205 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:23:44 has no hits.

BO10308.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:54 Download gff for BO10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 276..1224 15..963 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:29 Download gff for BO10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 276..1224 15..963 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:48:54 Download gff for BO10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 376..1324 15..963 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:24 Download gff for BO10308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 376..1324 15..963 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:24 Download gff for BO10308.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10661918..10662623 259..963 99 -> Minus
3L 10662684..10662926 15..258 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:48:54 Download gff for BO10308.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10655018..10655723 259..963 99 -> Minus
arm_3L 10655784..10656026 15..258 99   Minus

BO10308.5prime Sequence

915 bp (807 high quality bases) assembled on 2006-04-19

> BO10308.5prime
GAAGTTATCAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGG
ACGACGTGCAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGT
GGATTCAAGCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGA
CACCGGGATGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGG
CGGTGCAGCTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCAT
GGAGCTGATTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACA
TGTGTGCCGGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATA
GTGTCAACAGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCC
TGCGTGGAGACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTA
CACCCAAGTGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTAC
TCAAATCGTTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGG
ATTGCCCTGAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCT
GCGCAAGACGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATG
ACCTCAACGAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTG
GCCGAACTAATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAA
AAGTGGCGAGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGT
TTGTGAAGCGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTG
GAATACACGTTGCGCGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCAC
CATCTTCCGGCAAAT

BO10308.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PA 1224 CG8003-RA 1..899 17..915 4495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1555 CG8003-RB 101..999 17..915 4495 100 Plus
CG8003-RA 1368 CG8003-RA 101..999 17..915 4495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10661849..10662541 223..915 3465 100 Plus
3L 28110227 3L 10661575..10661782 17..224 1040 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:43:26 has no hits.

BO10308.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:55 Download gff for BO10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:30 Download gff for BO10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:26 Download gff for BO10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 90..999 7..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:03 Download gff for BO10308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 90..999 7..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:03 Download gff for BO10308.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10661564..10661781 7..223 98 -> Plus
3L 10661850..10662541 224..915 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:26 Download gff for BO10308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10654664..10654881 7..223 98 -> Plus
arm_3L 10654950..10655641 224..915 100   Plus

BO10308.complete Sequence

1255 bp (1255 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631707

> BO10308.complete
GAAGTTATCAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGG
ACGACGTGCAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGT
GGATTCAAGCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGA
CACCGGGATGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGG
CGGTGCAGCTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCAT
GGAGCTGATTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACA
TGTGTGCCGGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATA
GTGTCAACAGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCC
TGCGTGGAGACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTA
CACCCAAGTGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTAC
TCAAATCGTTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGG
ATTGCCCTGAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCT
GCGCAAGACGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATG
ACCTCAACGAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTG
GCCGAACTAATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAA
AAGTGGCGAGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGT
TTGTGAAGCGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTG
GAATACACGTTGCGCGAATGTGCCAGGGAGTTTCCCGTGAGAGAGTGCAC
CATCTTCCGGCAAATCGCAACGCAATTTGGCGCCAAGGATGCCCCACCAG
CACTGACTGTCCTGCGAAATGCCATCAATGGGATGAGGTGGATTACGGAC
GAGGGCAACTACTGCAGCACCTGCGGCGCCGAGAAACCGGACAAGAAGTG
CTCCAAGTGCAAGGCGGTGCAGTATTGCGATCGCGAATGCCAGCGGCTGC
ATTGGTTCATGCACAAGAAGAACTGTGCCCGCCTCCTGGCCCAATCCCAA
GCCCAAGCCCAAGCCCAGCCGCAATCGCAAGCGAAGGGAGCCATTGACAC
GGCCGAGCTGCGCGAGGAACTGTCCAAACTGACTGCGGCAAGCTTTCTAG
ACCAT

BO10308.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1224 CG8003-PB 1..1221 17..1237 6105 100 Plus
CG8003-RA 1224 CG8003-PA 1..1221 17..1237 6105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-RB 1555 CG8003-RB 101..1321 17..1237 6105 100 Plus
CG8003-RA 1368 CG8003-RA 101..1321 17..1237 6105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10661849..10662624 223..998 3880 100 Plus
3L 28110227 3L 10662683..10662923 997..1237 1205 100 Plus
3L 28110227 3L 10661575..10661782 17..224 1040 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:33:56 has no hits.

BO10308.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:15 Download gff for BO10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 1..1224 17..1241 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:58 Download gff for BO10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 86..1320 7..1241 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:01:34 Download gff for BO10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 101..1321 17..1239 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:15 Download gff for BO10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 86..1320 7..1241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:21 Download gff for BO10308.complete
Subject Subject Range Query Range Percent Splice Strand
CG8003-RA 101..1321 17..1239 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:21 Download gff for BO10308.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10661575..10661781 17..223 100 -> Plus
3L 10661850..10662623 224..997 100 -> Plus
3L 10662684..10662923 998..1239 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:01:34 Download gff for BO10308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10654675..10654881 17..223 100 -> Plus
arm_3L 10654950..10655723 224..997 100 -> Plus
arm_3L 10655784..10656023 998..1239 99   Plus

BO10308.pep Sequence

Translation from 16 to 1255

> BO10308.pep
MTEESKKIVQLDDVQRQLLDHLAKNDTSGFKQLLSGVRNVNFVDDTGMSC
LAHASFKGNREAVQLLLDMGADINLNQHGADYTPLHFAALSGNTHVCRLL
LDAGIKPGSINSVNRTAAQMAAFVGNHACVETINNYVTQSSLEYYTQVHG
QQTEPHIPPSLLKSFHAFVTEINLHPVRIALNVQSLGLLRILSSLRKTLA
LMCEKEMQKSHDLNELLAFKFHYQGWILAELIRCEEQFKAQHKEKSGEEA
GDANKNDFIEMFVKRVLKENKLGQLDYVEYTLRECAREFPVRECTIFRQI
ATQFGAKDAPPALTVLRNAINGMRWITDEGNYCSTCGAEKPDKKCSKCKA
VQYCDRECQRLHWFMHKKNCARLLAQSQAQAQAQPQSQAKGAIDTAELRE
ELSKLTAASFLDH

BO10308.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8003-PB 407 CG8003-PB 1..407 1..407 2128 100 Plus
CG8003-PA 407 CG8003-PA 1..407 1..407 2128 100 Plus