Clone BO10314 Report

Search the DGRC for BO10314

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG2258-RA
Protein status:BO10314.pep: Imported from assembly
Sequenced Size:2437

Clone Sequence Records

BO10314.complete Sequence

2437 bp assembled on 2010-02-17

GenBank Submission: KX799390

> BO10314.complete
GAAGTTATCAGTCGACATGCTCAAGGCTCTGTACGACTTCCAGGCGGTCT
ATCCGAAGACCATCAGCTTCGATGAGGGCGAGTACTTCATCCTTTACCAG
ACGTCCGCCCGCCAGCGCAATTGGTGGCAGGTTGTCAGCATGAAAGGCAA
CATTGGCTTTGTGCCCTCCAATTACGTAATGAAGATTAAGGTGGAGCACG
ACTTTCTCATCAGCTTTCTGAACTCCTCGATAGAATCGCTGGAGAAGTGC
ACGGACCATGAGATCAATGGCATCATGTCCAAGGACGAACTGCTGGACAG
GCTGCGCGAGAAGAAGCACACCATGGAGCGTCTGTATGCGGAGAGTTCCG
AGCGCGACGGTGACTCCTCGCTTTCCTATTCACACAGCTACAGTGACAAG
GGTAGCCACCGGCACTCGCATCCCCATCCCACCCAATCCCAGACGCAGCT
TCATTCCCAGCACAGGCAGCACAGTCCGCCGCCCAGCGGCGGCAGCGTTG
GCTCCCAGCGTTTGGACATGAGCAAGAAGAGCATGTCAAGTCCAGCGGTG
GGCTCATCGTGCGGCCTGCCCCAGAATCAGGGCATGATCGAATCGCCCAG
CATGGGCAGCATGCAGTTCCAGGGCAGCAGCTGCACCATCCAGACGCCGC
AGCAGCAACAGCCGCTCCCAGCACCGCCAGCACCAGCTCCCTCGCCATCG
GCAGCATCGGCCACACCCACTGCGGCATCAACGAGCAAAGCGGCCACCGG
CGGTGATGTCGCGCAGGACAATAGCATTACGTCGGAGCCCTCGGAGACGA
CAACGACCACTACGACGACCAGCGAAGATGTGGTCACCACATACAAGGAG
ACCAGCCAAATGAGCACCAGCCAGCAGCATAAGCCGCAAAATGGGAGCAC
TGCCTCGGCGTCCATTTCCGCATCTGCCTCGGCCTCAGCTTTGCGCAGCA
ACGGCGGCAACGGCAAGGCCAACGGTAGTGCCACAGCCCTGCATCAGGAG
CTGCAGCAGGAGGAAGCGGACAGTGCGCCGGACAAGTCGGATGATGCCAG
CGCCGTGCAAAGTGACGACGGTTGCCCGGCCAACGGAGATAGTGCGGATA
ATAGCCAGGCGCTGGACAGCATCGACAGTCCGTCGCATCGACAGCGCGGC
CTGAGCCTGGGCAGAATCGAGGAGGGTGCCACAGGAGGAGGCCAGTTGAA
GGTTGAGTCATCGGATGTATATCAGATTGTGGACGCCCTGCGGCGGAACA
CCAACCTCAGCTTCGATCTCTCCTGTGAAGCATTGCGCGTGGTGCTGACC
AGCCTGGAGCAGCTGTACAACGGTGCCATCAATCCGTACCTGGAGGCGGT
GGCCGTTCATGTCACTGGCAAAGTGGCCACGCCCAAGGAGCTGCTGGGCA
TTACGCACGACGCCAAGCGCTTGCAGTATCTCTTTGCCCAGCTGGCGGAC
TGCAAGAACGATACGGAGCAACGCACTTGGATGCTCTACGAGGATGAGGA
GGACATCATTCAGTTCCTTGAGGAGCTTGTTGAGATTTTGATCAATGCTG
ATGAGAGCATCAGTTGCTACGAGATGTCCTGCGATCAGTACCAGATGTTT
ATCAATCTGGTGCAGTACTATCAGATGGAGACGCGCTGGTCCATCAAGCG
ACTGCTGCTTAAGACCTTTACGGCCGCTTGCCATCTGGACTATATCATTG
TGGACATATTGCTGACCTCGGTGCTGCCATTGGAGATTGTCGAGGACATG
AAGACGCACTTCTCCAATCTGGATCGCTTCAAGCAGCTGGTCAAGATGCT
CACTATTATCTTCTCACTTGGACAGCCCATGCCGGTTAATCATCAGGATT
ATTTGGGCGTACATTTTGCCAGCTTCCTACTGGAAATCGTCGAGGGCAAT
AATCCGGAGGTCTTGGTGGACATGGTCATTGCCTTGATCTTGGCCTTCAA
TCAGCAATTTAGCGAACATACCTATAATGTCATCATCGAAGGTATGCAGA
ATCTGCCATCCGCCAAAGTGTTTACGGAGAAGTTGCTACTTTTGCTCAAT
CGAGAGGATGATCCCACACGCTTGCTCAAGCATCCCAACGAGCATATGAA
CACGGTGCTGCGAATGTTTATCGACATATTCAGCCATCCGGATACGGCGG
GCATGTTCTACACGAATGACATCAAGGTGCTTATCGATATAGTGGTTCGC
CAGCTATCCGATTTGGATGCCGGCAGTACGACGCGACCATGCTACTTGGA
GCTTTGCCGACGCATCCTGCGCAATACGAACTATCAGGAGCACCAGCATC
GCAAGCATGATCTCATGAAGATCTTCACGCGCATCTTCTGCGAGGAGACC
GAGTGCAGTGCCTCCGATCAGCAGCTGGTGCGGGAAATAGCGAACGAATT
TCCGCAGCTGTTCAAGGCCGCAAGCTTTCTAGACCAT

BO10314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2258-RD 2406 CG2258-PD 1..2403 17..2419 12015 100 Plus
CG2258-RA 2406 CG2258-PA 1..2403 17..2419 12015 100 Plus
CG2258-RC 2406 CG2258-PC 1..2403 17..2419 12015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2258-RD 5277 CG2258-RD 474..2881 12..2419 12025 100 Plus
CG2258-RA 3570 CG2258-RA 1115..3522 12..2419 12025 100 Plus
CG2258-RC 3920 CG2258-RC 910..3317 12..2419 12025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8097869..8099069 1540..340 6005 100 Minus
X 23542271 X 8097162..8097372 2057..1847 1055 100 Minus
X 23542271 X 8097611..8097811 1740..1540 1005 100 Minus
X 23542271 X 8096646..8096835 2419..2230 950 100 Minus
X 23542271 X 8099345..8099529 196..12 910 99.5 Minus
X 23542271 X 8096901..8097074 2230..2057 870 100 Minus
X 23542271 X 8099140..8099292 341..189 765 100 Minus
X 23542271 X 8097434..8097542 1847..1739 545 100 Minus
Blast to na_te.dros performed 2014-11-28 03:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 972..1035 625..692 123 69.1 Plus

BO10314.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:07 Download gff for BO10314.complete
Subject Subject Range Query Range Percent Splice Strand
CG2258-RA 1061..3463 17..2421 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:57 Download gff for BO10314.complete
Subject Subject Range Query Range Percent Splice Strand
CG2258-RC 915..3317 17..2421 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:57 Download gff for BO10314.complete
Subject Subject Range Query Range Percent Splice Strand
CG2258-RC 915..3317 17..2421 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:57 Download gff for BO10314.complete
Subject Subject Range Query Range Percent Splice Strand
X 8097434..8097542 1739..1847 100 <- Minus
X 8097613..8097810 1541..1738 100 <- Minus
X 8096644..8096834 2231..2421 98 <- Minus
X 8096901..8097073 2058..2230 100 <- Minus
X 8097162..8097371 1848..2057 100 <- Minus
X 8097869..8099068 341..1540 100 <- Minus
X 8099141..8099290 191..340 100 <- Minus
X 8099351..8099524 17..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:57 Download gff for BO10314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7990677..7990867 2231..2421 98 <- Minus
arm_X 7990934..7991106 2058..2230 100 <- Minus
arm_X 7991195..7991404 1848..2057 100 <- Minus
arm_X 7991467..7991575 1739..1847 100 <- Minus
arm_X 7991646..7991843 1541..1738 100 <- Minus
arm_X 7991902..7993101 341..1540 100 <- Minus
arm_X 7993174..7993323 191..340 100 <- Minus
arm_X 7993384..7993557 17..190 100   Minus

BO10314.3prime Sequence

898 bp (855 high quality bases) assembled on 2006-04-19

> BO10314.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGAACAGCTGCGGAAATTCGTTCGCTA
TTTCCCGCACCAGCTGCTGATCGGAGGCACTGCACTCGGTCTCCTCGCAG
AAGATGCGCGTGAAGATCTTCATGAGATCATGCTTGCGATGCTGGTGCTC
CTGATAGTTCGTATTGCGCAGGATGCGTCGGCAAAGCTCCAAGTAGCATG
GTCGCGTCGTACTGCCGGCATCCAAATCGGATAGCTGGCGAACCACTATA
TCGATAAGCACCTTGATGTCATTCGTGTAGAACATGCCCGCCGTATCCGG
ATGGCTGAATATGTCGATAAACATTCGCAGCACCGTGTTCATATGCTCGT
TGGGATGCTTGAGCAAGCGTGTGGGATCATCCTCTCGATTGAGCAAAAGT
AGCAACTTCTCCGTAAACACTTTGGCGGATGGCAGATTCTGCATACCTTC
GATGATGACATTATAGGTATGTTCGCTAAATTGCTGATTGAAGGCCAAGA
TCAAGGCAATGACCATGTCCACCAAGACCTCCGGATTATTGCCCTCGACG
ATTTCCAGTAGGAAGCTGGCAAAATGTACGCCCAAATAATCCTGATGATT
AACCGGCATGGGCTGTCCAAGTGAGAAGATAATAGTGAGCATCTTGACCA
GCTGCTTGAAGCGATCCAGATTGGAGAAGTGCGTCTTCATGTCCTCGACA
ATCTCCAATGGCAGCACCGAGGTCAGCAATATGTCCACAATGATATAGTC
CAGATGGCAAGCGGCCGTAAAGGTCTTAAGCAGCAGTCGCTTGATGGACC
AGCGCGTCTCCATCTGATAGTACTGCACCAGATTGATAAACATCTGGTAC
TGATCGCAGGACATCTCGTAGCAACTGATGCTCTCATCAGCATTGATC

BO10314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2258-PB 2406 CG2258-RB 1524..2403 898..19 4400 100 Minus
CG2258-PC 2406 CG2258-RC 1524..2403 898..19 4400 100 Minus
CG2258-PA 2406 CG2258-RA 1524..2403 898..19 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2258-RD 5277 CG2258-RD 2002..2881 898..19 4400 100 Minus
CG2258-RA 3570 CG2258-RA 2643..3522 898..19 4400 100 Minus
CG2258-RC 3920 CG2258-RC 2438..3317 898..19 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8097162..8097372 381..591 1055 100 Plus
X 23542271 X 8097611..8097811 698..898 1005 100 Plus
X 23542271 X 8096646..8096835 19..208 950 100 Plus
X 23542271 X 8096901..8097074 208..381 870 100 Plus
X 23542271 X 8097434..8097542 591..699 545 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:18:45 has no hits.

BO10314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:07 Download gff for BO10314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-PA 1524..2406 15..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:45 Download gff for BO10314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-PA 1524..2406 15..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:22 Download gff for BO10314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-RC 2438..3325 10..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:40 Download gff for BO10314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-RC 2438..3325 10..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:40 Download gff for BO10314.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8096638..8096834 10..207 97 <- Plus
X 8096901..8097073 208..380 100 <- Plus
X 8097162..8097371 381..590 100 <- Plus
X 8097434..8097542 591..699 100 <- Plus
X 8097613..8097811 700..898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:22 Download gff for BO10314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7990671..7990867 10..207 97 <- Plus
arm_X 7990934..7991106 208..380 100 <- Plus
arm_X 7991195..7991404 381..590 100 <- Plus
arm_X 7991467..7991575 591..699 100 <- Plus
arm_X 7991646..7991844 700..898 100   Plus

BO10314.5prime Sequence

963 bp (853 high quality bases) assembled on 2006-04-19

> BO10314.5prime
GAAGTTATCAGTCGACATGCTCAAGGCTCTGTACGACTTCCAGGCGGTCT
ATCCGAAGACCATCAGCTTCGATGAGGGCGAGTACTTCATCCTTTACCAG
ACGTCCGCCCGCCAGCGCAATTGGTGGCAGGTTGTCAGCATGAAAGGCAA
CATTGGCTTTGTGCCCTCCAATTACGTAATGAAGATTAAGGTGGAGCACG
ACTTTCTCATCAGCTTTCTGAACTCCTCGATAGAATCGCTGGAGAAGTGC
ACGGACCATGAGATCAATGGCATCATGTCCAAGGACGAACTGCTGGACAG
GCTGCGCGAGAAGAAGCACACCATGGAGCGTCTGTATGCGGAGAGTTCCG
AGCGCGACGGTGACTCCTCGCTTTCCTATTCACACAGCTACAGTGACAAG
GGTAGCCACCGGCACTCGCATCCCCATCCCACCCAATCCCAGACGCAGCT
TCATTCCCAGCACAGGCAGCACAGTCCGCCGCCCAGCGGCGGCAGCGTTG
GCTCCCAGCGTTTGGACATGAGCAAGAAGAGCATGTCAAGTCCAGCGGTG
GGCTCATCGTGCGGCCTGCCCCAGAATCAGGGCATGATCGAATCGCCCAG
CATGGGCAGCATGCAGTTCCAGGGCAGCAGCTGCACCATCCAGACGCCGC
AGCAGCAACAGCCGCTCCCAGCACCGCCAGCACCAGCTCCCTCGCCATCG
GCAGCATCGGCCACACCCACTGCGGCATCAACGAGCAAAGCGGCCACCGG
CGGTGATGTCGCGCAGGACAATAGCATTACGTCGGAGCCCTCGGAGACGA
CAACGACCACTACGACGACCAGCGAAGATGTGGTCACCACATACAAGGAG
ACCAGCCAAATGAGCACCAGCCAGCAGCATAAGCCGCAAAATGGGAGCAC
TGCCTCGGGCGTCATTTCCGCATCTGCCTCGGCCTCAGCTTTTGCGCAGC
ACGGCGGCAACGG

BO10314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2258-PB 2406 CG2258-RB 1..892 17..908 4460 100 Plus
CG2258-PC 2406 CG2258-RC 1..892 17..908 4460 100 Plus
CG2258-PA 2406 CG2258-RA 1..892 17..908 4460 100 Plus
CG2258-PB 2406 CG2258-RB 897..926 913..942 150 100 Plus
CG2258-PC 2406 CG2258-RC 897..926 913..942 150 100 Plus
CG2258-PA 2406 CG2258-RA 897..926 913..942 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2258-RD 5277 CG2258-RD 474..1425 12..963 4655 99.5 Plus
CG2258-RA 3570 CG2258-RA 1115..2066 12..963 4655 99.5 Plus
CG2258-RC 3920 CG2258-RC 910..1861 12..963 4655 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8098446..8099069 963..340 2965 99 Minus
X 23542271 X 8099345..8099529 196..12 910 99.5 Minus
X 23542271 X 8099140..8099292 341..189 765 100 Minus
Blast to na_te.dros performed 2015-02-10 20:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 972..1035 625..692 123 69.1 Plus
TART-C 11124 TART-C TARTC 11124bp 9188..9229 669..710 111 73.8 Plus

BO10314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:08 Download gff for BO10314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-PA 1..947 17..963 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:48:46 Download gff for BO10314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-PA 1..947 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:47:17 Download gff for BO10314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-RC 908..1861 9..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:46 Download gff for BO10314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2258-RC 908..1861 9..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:46 Download gff for BO10314.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8098446..8099068 341..963 99 <- Minus
X 8099141..8099290 191..340 100 <- Minus
X 8099351..8099531 9..190 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:47:17 Download gff for BO10314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7992479..7993101 341..963 99 <- Minus
arm_X 7993174..7993323 191..340 100 <- Minus
arm_X 7993384..7993564 9..190 98   Minus

BO10314.pep Sequence

Translation from 16 to 2437

> BO10314.pep
MLKALYDFQAVYPKTISFDEGEYFILYQTSARQRNWWQVVSMKGNIGFVP
SNYVMKIKVEHDFLISFLNSSIESLEKCTDHEINGIMSKDELLDRLREKK
HTMERLYAESSERDGDSSLSYSHSYSDKGSHRHSHPHPTQSQTQLHSQHR
QHSPPPSGGSVGSQRLDMSKKSMSSPAVGSSCGLPQNQGMIESPSMGSMQ
FQGSSCTIQTPQQQQPLPAPPAPAPSPSAASATPTAASTSKAATGGDVAQ
DNSITSEPSETTTTTTTTSEDVVTTYKETSQMSTSQQHKPQNGSTASASI
SASASASALRSNGGNGKANGSATALHQELQQEEADSAPDKSDDASAVQSD
DGCPANGDSADNSQALDSIDSPSHRQRGLSLGRIEEGATGGGQLKVESSD
VYQIVDALRRNTNLSFDLSCEALRVVLTSLEQLYNGAINPYLEAVAVHVT
GKVATPKELLGITHDAKRLQYLFAQLADCKNDTEQRTWMLYEDEEDIIQF
LEELVEILINADESISCYEMSCDQYQMFINLVQYYQMETRWSIKRLLLKT
FTAACHLDYIIVDILLTSVLPLEIVEDMKTHFSNLDRFKQLVKMLTIIFS
LGQPMPVNHQDYLGVHFASFLLEIVEGNNPEVLVDMVIALILAFNQQFSE
HTYNVIIEGMQNLPSAKVFTEKLLLLLNREDDPTRLLKHPNEHMNTVLRM
FIDIFSHPDTAGMFYTNDIKVLIDIVVRQLSDLDAGSTTRPCYLELCRRI
LRNTNYQEHQHRKHDLMKIFTRIFCEETECSASDQQLVREIANEFPQLFK
AASFLDH

BO10314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2258-PD 801 CG2258-PD 1..801 1..801 4129 100 Plus
CG2258-PA 801 CG2258-PA 1..801 1..801 4129 100 Plus
CG2258-PC 801 CG2258-PC 1..801 1..801 4129 100 Plus
CG2258-PB 801 CG2258-PB 1..801 1..801 4129 100 Plus