Clone Sequence Records
BO10332.3prime Sequence
928 bp (810 high quality bases) assembled on 2006-04-19
> BO10332.3prime
ATGGTCTAGAAAGCTTGCGTAGGGCGCATATCTGCGACCCGGCGGCGATG
GACCGCGCATTCCGCGCGACGAAATCATGCGTTCGTCGAATGCATCGCGA
CTAAAGTCCTCGTAACCGTGTGGAGTGGGCGAGCCGTAGCGACTCATTCC
ATTGCTGCTACGCGGCGGCGGAGGCGAGCGCCGGCTGAACATAGTGTCGT
ATCCACGAGAAACGCTGCAGGAGCGCAGGCTGCCGCTTAAGGTGGGCGGT
AGAGGCATGGGTTCGCGGCGAGAGATGGGCGGCGGTGGGAAGTCGCGCAT
TCGCGAGGTCTGATAGCGACGCTCATACAGATCGCGTGAGTCCTCGAAGC
GGCGGTCATAGTAGTCATAGTCCCTAAAGCCATCCATGATGCGGTCACGC
AGGAACGGCGGCGGCGGTGGTGGCGGCGGATACGGGTCACGACCGTACAT
GCGATCTCTGTAGCCGCCGGCGCTGAGGGGCGATGGCGGCTCGCGTCCGC
CTCCGGCACTGCCGTACAGTCGCGGACACTCTTTCGACCAATGCCCGGAT
CTTCCGCACCGATAGCACTGCTCCGGATCGCCCATGCCCGGCTTGGGGCG
GACCCGACTGGTCGACACTTGAACCTTGAGCGGCTGGCCATCGACAACGC
GACCGTTCAGCTCCTTAATGGCGTCCTGCACATCACCGACACAGTCCAGA
TGGACAAAACCATAGTTGCGCACAATGTCGCATTCGACGACGGTGCCGTA
TTTCTGAAACAGTTCCCGCACCTCCGGCGCCCGCGTCTTGTCCGTTAGAT
TTCCCACGAAGATTTTCGTGGTCGGCGTATTGGGCGCCCGCCGGCTCTTG
GCCGCCTCCACCTTGATGGCGAACTCGTTCAGCGTATAACCGTTCAGATT
CTGTATGGCATCGCGACCCTGCTGCTCC
BO10332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8597-PB | 1059 | lark-RB | 147..1056 | 928..19 | 4550 | 100 | Minus |
CG8597-PA | 1059 | lark-RA | 147..1056 | 928..19 | 4550 | 100 | Minus |
CG8597-PC | 1059 | lark-RC | 147..1056 | 928..19 | 4550 | 100 | Minus |
CG8597-PE | 1059 | lark-RE | 147..1056 | 928..19 | 4550 | 100 | Minus |
CG8597-PD | 1059 | lark-RD | 147..1056 | 928..19 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1758 | CG8597-RD | 423..1332 | 928..19 | 4550 | 100 | Minus |
lark-RE | 2087 | CG8597-RE | 752..1661 | 928..19 | 4550 | 100 | Minus |
lark-RC | 1784 | CG8597-RC | 449..1358 | 928..19 | 4550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7340215..7340771 | 928..372 | 2785 | 100 | Minus |
3L | 28110227 | 3L | 7340875..7341114 | 373..134 | 1200 | 100 | Minus |
3L | 28110227 | 3L | 7341352..7341467 | 134..19 | 580 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 568..509 | 125 | 69.4 | Minus |
BO10332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:39 Download gff for
BO10332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-PB | 147..1059 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:30 Download gff for
BO10332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8597-PD | 147..1059 | 16..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:20:27 Download gff for
BO10332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 449..1358 | 19..928 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:52 Download gff for
BO10332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 449..1358 | 19..928 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:52 Download gff for
BO10332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7340215..7340770 | 373..928 | 100 | -> | Minus |
3L | 7340876..7341114 | 134..372 | 100 | -> | Minus |
3L | 7341353..7341467 | 19..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:20:27 Download gff for
BO10332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7333315..7333870 | 373..928 | 100 | -> | Minus |
arm_3L | 7333976..7334214 | 134..372 | 100 | -> | Minus |
arm_3L | 7334453..7334567 | 19..133 | 100 | | Minus |
BO10332.5prime Sequence
885 bp (827 high quality bases) assembled on 2006-04-19
> BO10332.5prime
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCG
BO10332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8597-PB | 1059 | lark-RB | 1..869 | 17..885 | 4345 | 100 | Plus |
CG8597-PA | 1059 | lark-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
CG8597-PC | 1059 | lark-RC | 1..869 | 17..885 | 4345 | 100 | Plus |
CG8597-PE | 1059 | lark-RE | 1..869 | 17..885 | 4345 | 100 | Plus |
CG8597-PD | 1059 | lark-RD | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1758 | CG8597-RD | 276..1145 | 16..885 | 4350 | 100 | Plus |
lark-RE | 2087 | CG8597-RE | 605..1474 | 16..885 | 4350 | 100 | Plus |
lark-RC | 1784 | CG8597-RC | 302..1171 | 16..885 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7340068..7340771 | 16..719 | 3520 | 100 | Plus |
3L | 28110227 | 3L | 7340875..7341042 | 718..885 | 840 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 04:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 523..582 | 125 | 69.4 | Plus |
BO10332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:40 Download gff for
BO10332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-PB | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:31 Download gff for
BO10332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8597-PD | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:03 Download gff for
BO10332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 299..1171 | 13..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:34 Download gff for
BO10332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 299..1171 | 13..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:34 Download gff for
BO10332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7340065..7340770 | 13..718 | 99 | -> | Plus |
3L | 7340876..7341042 | 719..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:03 Download gff for
BO10332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7333165..7333870 | 13..718 | 99 | -> | Plus |
arm_3L | 7333976..7334142 | 719..885 | 100 | | Plus |
BO10332.complete Sequence
1090 bp (1090 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631709
> BO10332.complete
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCGTGGATACGACACTAT
GTTCAGCCGGCGCTCGCCTCCGCCGCCGCGTAGCAGCAATGGAATGAGTC
GCTACGGCTCGCCCACTCCACACGGTTACGAGGACTTTAGTCGCGATGCA
TTCGACGAACGCATGATTTCGTCGCGCGGAATGCGCGGTCCATCGCCGCC
GGGTCGCAGATATGCGCCCTACGCAAGCTTTCTAGACCAT
BO10332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1059 | CG8597-PD | 1..1056 | 17..1072 | 5280 | 100 | Plus |
lark-RE | 1059 | CG8597-PE | 1..1056 | 17..1072 | 5280 | 100 | Plus |
lark-RC | 1059 | CG8597-PC | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-RD | 1758 | CG8597-RD | 276..1332 | 16..1072 | 5285 | 100 | Plus |
lark-RE | 2087 | CG8597-RE | 605..1661 | 16..1072 | 5285 | 100 | Plus |
lark-RC | 1784 | CG8597-RC | 302..1358 | 16..1072 | 5285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7340068..7340771 | 16..719 | 3520 | 100 | Plus |
3L | 28110227 | 3L | 7340875..7341114 | 718..957 | 1200 | 100 | Plus |
3L | 28110227 | 3L | 7341352..7341467 | 957..1072 | 580 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 1271..1332 | 523..582 | 125 | 69.4 | Plus |
BO10332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:18 Download gff for
BO10332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 1..1059 | 17..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:02 Download gff for
BO10332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 291..1350 | 13..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:40 Download gff for
BO10332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 303..1358 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:18 Download gff for
BO10332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 291..1350 | 13..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:20 Download gff for
BO10332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lark-RC | 303..1358 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:20 Download gff for
BO10332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7340069..7340770 | 17..718 | 100 | -> | Plus |
3L | 7340876..7341114 | 719..957 | 100 | -> | Plus |
3L | 7341353..7341467 | 958..1074 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:40 Download gff for
BO10332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7334453..7334567 | 958..1074 | 98 | | Plus |
arm_3L | 7333976..7334214 | 719..957 | 100 | -> | Plus |
arm_3L | 7333169..7333870 | 17..718 | 100 | -> | Plus |
BO10332.pep Sequence
Translation from 16 to 1090
> BO10332.pep
MPGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETE
QQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAP
EVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLK
VQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPL
SAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLY
ERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRS
PPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYA
PYASFLDH
BO10332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lark-PD | 352 | CG8597-PD | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PE | 352 | CG8597-PE | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PC | 352 | CG8597-PC | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PA | 352 | CG8597-PA | 1..352 | 1..352 | 1919 | 100 | Plus |
lark-PB | 352 | CG8597-PB | 1..352 | 1..352 | 1919 | 100 | Plus |