Clone BO10332 Report

Search the DGRC for BO10332

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptlark-RA
Protein status:BO10332.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO10332.3prime Sequence

928 bp (810 high quality bases) assembled on 2006-04-19

> BO10332.3prime
ATGGTCTAGAAAGCTTGCGTAGGGCGCATATCTGCGACCCGGCGGCGATG
GACCGCGCATTCCGCGCGACGAAATCATGCGTTCGTCGAATGCATCGCGA
CTAAAGTCCTCGTAACCGTGTGGAGTGGGCGAGCCGTAGCGACTCATTCC
ATTGCTGCTACGCGGCGGCGGAGGCGAGCGCCGGCTGAACATAGTGTCGT
ATCCACGAGAAACGCTGCAGGAGCGCAGGCTGCCGCTTAAGGTGGGCGGT
AGAGGCATGGGTTCGCGGCGAGAGATGGGCGGCGGTGGGAAGTCGCGCAT
TCGCGAGGTCTGATAGCGACGCTCATACAGATCGCGTGAGTCCTCGAAGC
GGCGGTCATAGTAGTCATAGTCCCTAAAGCCATCCATGATGCGGTCACGC
AGGAACGGCGGCGGCGGTGGTGGCGGCGGATACGGGTCACGACCGTACAT
GCGATCTCTGTAGCCGCCGGCGCTGAGGGGCGATGGCGGCTCGCGTCCGC
CTCCGGCACTGCCGTACAGTCGCGGACACTCTTTCGACCAATGCCCGGAT
CTTCCGCACCGATAGCACTGCTCCGGATCGCCCATGCCCGGCTTGGGGCG
GACCCGACTGGTCGACACTTGAACCTTGAGCGGCTGGCCATCGACAACGC
GACCGTTCAGCTCCTTAATGGCGTCCTGCACATCACCGACACAGTCCAGA
TGGACAAAACCATAGTTGCGCACAATGTCGCATTCGACGACGGTGCCGTA
TTTCTGAAACAGTTCCCGCACCTCCGGCGCCCGCGTCTTGTCCGTTAGAT
TTCCCACGAAGATTTTCGTGGTCGGCGTATTGGGCGCCCGCCGGCTCTTG
GCCGCCTCCACCTTGATGGCGAACTCGTTCAGCGTATAACCGTTCAGATT
CTGTATGGCATCGCGACCCTGCTGCTCC

BO10332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8597-PB 1059 lark-RB 147..1056 928..19 4550 100 Minus
CG8597-PA 1059 lark-RA 147..1056 928..19 4550 100 Minus
CG8597-PC 1059 lark-RC 147..1056 928..19 4550 100 Minus
CG8597-PE 1059 lark-RE 147..1056 928..19 4550 100 Minus
CG8597-PD 1059 lark-RD 147..1056 928..19 4550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1758 CG8597-RD 423..1332 928..19 4550 100 Minus
lark-RE 2087 CG8597-RE 752..1661 928..19 4550 100 Minus
lark-RC 1784 CG8597-RC 449..1358 928..19 4550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7340215..7340771 928..372 2785 100 Minus
3L 28110227 3L 7340875..7341114 373..134 1200 100 Minus
3L 28110227 3L 7341352..7341467 134..19 580 100 Minus
Blast to na_te.dros performed 2015-02-12 04:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 1271..1332 568..509 125 69.4 Minus

BO10332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:39 Download gff for BO10332.3prime
Subject Subject Range Query Range Percent Splice Strand
lark-PB 147..1059 16..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:30 Download gff for BO10332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8597-PD 147..1059 16..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:20:27 Download gff for BO10332.3prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 449..1358 19..928 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:52 Download gff for BO10332.3prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 449..1358 19..928 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:52 Download gff for BO10332.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7340215..7340770 373..928 100 -> Minus
3L 7340876..7341114 134..372 100 -> Minus
3L 7341353..7341467 19..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:20:27 Download gff for BO10332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7333315..7333870 373..928 100 -> Minus
arm_3L 7333976..7334214 134..372 100 -> Minus
arm_3L 7334453..7334567 19..133 100   Minus

BO10332.5prime Sequence

885 bp (827 high quality bases) assembled on 2006-04-19

> BO10332.5prime
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCG

BO10332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8597-PB 1059 lark-RB 1..869 17..885 4345 100 Plus
CG8597-PA 1059 lark-RA 1..869 17..885 4345 100 Plus
CG8597-PC 1059 lark-RC 1..869 17..885 4345 100 Plus
CG8597-PE 1059 lark-RE 1..869 17..885 4345 100 Plus
CG8597-PD 1059 lark-RD 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1758 CG8597-RD 276..1145 16..885 4350 100 Plus
lark-RE 2087 CG8597-RE 605..1474 16..885 4350 100 Plus
lark-RC 1784 CG8597-RC 302..1171 16..885 4350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7340068..7340771 16..719 3520 100 Plus
3L 28110227 3L 7340875..7341042 718..885 840 100 Plus
Blast to na_te.dros performed 2015-02-10 04:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 1271..1332 523..582 125 69.4 Plus

BO10332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:40 Download gff for BO10332.5prime
Subject Subject Range Query Range Percent Splice Strand
lark-PB 1..869 17..885 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:31 Download gff for BO10332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8597-PD 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:03 Download gff for BO10332.5prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 299..1171 13..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:34 Download gff for BO10332.5prime
Subject Subject Range Query Range Percent Splice Strand
lark-RC 299..1171 13..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:34 Download gff for BO10332.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7340065..7340770 13..718 99 -> Plus
3L 7340876..7341042 719..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:03 Download gff for BO10332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7333165..7333870 13..718 99 -> Plus
arm_3L 7333976..7334142 719..885 100   Plus

BO10332.complete Sequence

1090 bp (1090 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631709

> BO10332.complete
GAAGTTATCAGTCGACATGCCCGGAGCCGGCACGTTCAAGTTATTCATCG
GGAATCTTGACGAGAAGACACAGGCCACCGAGCTGCGTGCACTGTTCGAG
AAGTACGGTACCGTCGTCGAGTGCGACGTGGTGAAGAACTATGGCTTCGT
TCACATGGAGACGGAGCAGCAGGGTCGCGATGCCATACAGAATCTGAACG
GTTATACGCTGAACGAGTTCGCCATCAAGGTGGAGGCGGCCAAGAGCCGG
CGGGCGCCCAATACGCCGACCACGAAAATCTTCGTGGGAAATCTAACGGA
CAAGACGCGGGCGCCGGAGGTGCGGGAACTGTTTCAGAAATACGGCACCG
TCGTCGAATGCGACATTGTGCGCAACTATGGTTTTGTCCATCTGGACTGT
GTCGGTGATGTGCAGGACGCCATTAAGGAGCTGAACGGTCGCGTTGTCGA
TGGCCAGCCGCTCAAGGTTCAAGTGTCGACCAGTCGGGTCCGCCCCAAGC
CGGGCATGGGCGATCCGGAGCAGTGCTATCGGTGCGGAAGATCCGGGCAT
TGGTCGAAAGAGTGTCCGCGACTGTACGGCAGTGCCGGAGGCGGACGCGA
GCCGCCATCGCCCCTCAGCGCCGGCGGCTACAGAGATCGCATGTACGGTC
GTGACCCGTATCCGCCGCCACCACCGCCGCCGCCGTTCCTGCGTGACCGC
ATCATGGATGGCTTTAGGGACTATGACTACTATGACCGCCGCTTCGAGGA
CTCACGCGATCTGTATGAGCGTCGCTATCAGACCTCGCGAATGCGCGACT
TCCCACCGCCGCCCATCTCTCGCCGCGAACCCATGCCTCTACCGCCCACC
TTAAGCGGCAGCCTGCGCTCCTGCAGCGTTTCTCGTGGATACGACACTAT
GTTCAGCCGGCGCTCGCCTCCGCCGCCGCGTAGCAGCAATGGAATGAGTC
GCTACGGCTCGCCCACTCCACACGGTTACGAGGACTTTAGTCGCGATGCA
TTCGACGAACGCATGATTTCGTCGCGCGGAATGCGCGGTCCATCGCCGCC
GGGTCGCAGATATGCGCCCTACGCAAGCTTTCTAGACCAT

BO10332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1059 CG8597-PD 1..1056 17..1072 5280 100 Plus
lark-RE 1059 CG8597-PE 1..1056 17..1072 5280 100 Plus
lark-RC 1059 CG8597-PC 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
lark-RD 1758 CG8597-RD 276..1332 16..1072 5285 100 Plus
lark-RE 2087 CG8597-RE 605..1661 16..1072 5285 100 Plus
lark-RC 1784 CG8597-RC 302..1358 16..1072 5285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7340068..7340771 16..719 3520 100 Plus
3L 28110227 3L 7340875..7341114 718..957 1200 100 Plus
3L 28110227 3L 7341352..7341467 957..1072 580 100 Plus
Blast to na_te.dros performed 2014-11-27 12:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 1271..1332 523..582 125 69.4 Plus

BO10332.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:18 Download gff for BO10332.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 1..1059 17..1075 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:02 Download gff for BO10332.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 291..1350 13..1072 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:40 Download gff for BO10332.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 303..1358 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:18 Download gff for BO10332.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 291..1350 13..1072 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:20 Download gff for BO10332.complete
Subject Subject Range Query Range Percent Splice Strand
lark-RC 303..1358 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:20 Download gff for BO10332.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7340069..7340770 17..718 100 -> Plus
3L 7340876..7341114 719..957 100 -> Plus
3L 7341353..7341467 958..1074 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:40 Download gff for BO10332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7334453..7334567 958..1074 98   Plus
arm_3L 7333976..7334214 719..957 100 -> Plus
arm_3L 7333169..7333870 17..718 100 -> Plus

BO10332.pep Sequence

Translation from 16 to 1090

> BO10332.pep
MPGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETE
QQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAP
EVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVDGQPLK
VQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPL
SAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLY
ERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRS
PPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYA
PYASFLDH

BO10332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
lark-PD 352 CG8597-PD 1..352 1..352 1919 100 Plus
lark-PE 352 CG8597-PE 1..352 1..352 1919 100 Plus
lark-PC 352 CG8597-PC 1..352 1..352 1919 100 Plus
lark-PA 352 CG8597-PA 1..352 1..352 1919 100 Plus
lark-PB 352 CG8597-PB 1..352 1..352 1919 100 Plus