Clone Sequence Records
BO10335.3prime Sequence
936 bp (881 high quality bases) assembled on 2006-04-19
> BO10335.3prime
ATGGTCTAGAAAGCTTGCCTGCTCGGCCATCATGCAAAACTTGTCGGCCA
TCAGGGTGAGCACCTTTTCCAGTTTGTTGTGCCGATCTTCGGCCTTGGCC
GTTGCTCCGGAACTGCCCCATAGGAACTTGACATGGAACTCGGTTCGAAA
AGCATCAGCTAGAAGCTCATCGAGCCGAGGACTAGCATCCTCCAGGATGA
TCTTGGCATTCTTTCGATACAGTTCCAAGTTCTTCAGGAAGCCACGCGAT
GCATCCAGGTGCTGGAAATTAATGGTCATGCCAAAGTCATCCGCTTTCGA
CTCCCAAGGAGCAATACAGGTGTGGTACAGAGCTGGGCGATCGTCAATGT
TGGAGTGGTTTATGATGTCCATAACGGGTCGATCGATCAGTAGTGCATAC
AGCAGAACATGGGGAACGGTTGTGTTTGGAGCCTGTGGATTGGAGGCCTC
GTTCATGATGCTCAACGTGGGTCGCAACTTGGCCTCGAAGGTGAAGGCGC
TGTCCGTGTACTGTTGCCTCAGGATGTGCCAGGCCTGGTCGAGCTTTTGG
ATCTGTTGCATGCACAGGCCCAACATGATGGCGCAGAATCCAAACAGATT
GCCGAGAGCCGTCTTAGTTTCCACTGCGATCTGAATCCATTTACTGAGCA
GTTGGGCTCGGTCCAGATCCGTTTGACAGGTGAGTATGGTCACAGCGACC
ATCAGCTTGATGCACTGCGTCCGCTCTATTATGTCCTCCCTAAAGACCTT
TCCATGGGGCAGTGTTAGCAGCTCAAGACCCGAACAGCTCAGATAGTAGT
CCTCCTCGTTCGACGGCTCCTCCAAAAACAGGGCAATGTCGATGCGAGTG
ATGTGCTCCGCCAGCAGCTTTGGGCCCGTCTCCAGAAGCATCATCTTGAA
CGTGTTGAGGGCATCGCCATCCAGGGGCTTGTTCTC
BO10335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-PA | 2835 | CG9098-RA | 1915..2832 | 936..19 | 4590 | 100 | Minus |
| CG9098-PB | 2262 | CG9098-RB | 1342..2259 | 936..19 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 2006..2923 | 936..19 | 4590 | 100 | Minus |
| CG9098-RB | 2998 | CG9098-RB | 1675..2592 | 936..19 | 4590 | 100 | Minus |
| CG9098-RA | 3481 | CG9098-RA | 2017..2934 | 936..19 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6008096..6008505 | 146..555 | 2050 | 100 | Plus |
| 2L | 23513712 | 2L | 6008755..6009138 | 553..936 | 1920 | 100 | Plus |
| 2L | 23513712 | 2L | 6007911..6008038 | 19..146 | 640 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 16:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7372..7409 | 855..892 | 109 | 76.3 | Plus |
BO10335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:45 Download gff for
BO10335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1342..2262 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:38 Download gff for
BO10335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1342..2262 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:34:56 Download gff for
BO10335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 2017..2940 | 12..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:37 Download gff for
BO10335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 2017..2940 | 12..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:37 Download gff for
BO10335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6007905..6008037 | 12..145 | 98 | <- | Plus |
| 2L | 6008096..6008502 | 146..552 | 100 | <- | Plus |
| 2L | 6008755..6009138 | 553..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:34:56 Download gff for
BO10335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6007905..6008037 | 12..145 | 98 | <- | Plus |
| arm_2L | 6008096..6008502 | 146..552 | 100 | <- | Plus |
| arm_2L | 6008755..6009138 | 553..936 | 100 | | Plus |
BO10335.5prime Sequence
919 bp (785 high quality bases) assembled on 2006-04-19
> BO10335.5prime
GAAGTTATCAGTCGACATGGAGGGCTATGGGAGCAGCAATGCCACCACTC
CGCTGGCCACCGCCCAGCCCAGTCCCAGCGAGCAACAGGAGGCCATCGCC
CTGAAGAAGGCGCTCGAGTGGGAGCTGAGTTTGGACGCCAGGGAGCTGCG
TTCCCACGCCTGGTACCACGGCGCACTGCCACGCCAGCGGGCCGAGGAGA
TCGTGCAGCGCGAAGGCGACTTCCTGGTCCGCGACTGCGCCTCCCAGCCG
GACAACTATGTGCTCAGTTGCCGGAGCAAAGCGGCTGTACTGCACTTCGT
ACTTAATAAGTTGGTGCTTCAACCGGAGACGGTTTACGAACGTGTGCAGT
ACCAGTTTGAGGAGGATGCCTTCGATACGGTGCCCGACCTAATTACCTTC
TACGTGGGATCCGGCAAGCCCATCTCGTCAGCATCGGGAGCGCTCATTCA
GTTTCCCTGCAATCGCACCTATCCGCTCTCCTTCTACGGCCACAAGATCG
TGGGCAACCAACTGCACACGCAGATGCTGGCCGGTCTGCGAGGTCTGAGT
CCTCTGAACTCGCCGATGGGCAGCAATGGTGCAGTGGGAGCAGGTATGAA
CGCTACCTTTCGCTTCGAACCGCAGCAGCAGCAGCAGCAACAGCTCTCGC
CGATGGCTGGCTCACCGGCCAGTCCGCACTGCTCGCCGCCGCGGGCGCGT
AGAGAGGTGCCTCCACCGCCGCGGCTGCCGTGCAAGAAGCAACAGCGCTC
CCAGAGCCTCACACCGGCCCAGGCCATGTTGGTCAGCAACATCAACAAGC
TTCAGGAGCAACAACTACAGATGCAGGAGCTCGAGAATGGCAATGGCAAC
GGAATAATGCGCTTCCAGACATCGCCAGGTGCAATCCGAACAGTGAGCAG
CACCTGGAGAGCAAGTTCA
BO10335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-PA | 2835 | CG9098-RA | 574..1428 | 17..871 | 4275 | 100 | Plus |
| CG9098-PB | 2262 | CG9098-RB | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG9098-PA | 2835 | CG9098-RA | 1429..1477 | 871..919 | 220 | 97.9 | Plus |
| CG9098-PB | 2262 | CG9098-RB | 856..904 | 871..919 | 220 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 665..1568 | 17..919 | 4480 | 99.8 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 334..1237 | 17..919 | 4480 | 99.8 | Plus |
| CG9098-RA | 3481 | CG9098-RA | 676..1579 | 17..919 | 4480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6009631..6010242 | 919..309 | 2995 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6010309..6010606 | 314..17 | 1475 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-02 12:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 126..157 | 124 | 87.5 | Plus |
BO10335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:46 Download gff for
BO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1..903 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:39 Download gff for
BO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-PB | 1..903 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:07 Download gff for
BO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1578 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:38 Download gff for
BO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 669..1578 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:38 Download gff for
BO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6009632..6010240 | 311..918 | 99 | <- | Minus |
| 2L | 6010313..6010610 | 9..310 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:07 Download gff for
BO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6009632..6010240 | 311..918 | 99 | <- | Minus |
| arm_2L | 6010313..6010610 | 9..310 | 98 | | Minus |
BO10335.complete Sequence
2293 bp (2293 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631710
> BO10335.complete
GAAGTTATCAGTCGACATGGAGGGCTATGGGAGCAGCAATGCCACCACTC
CGCTGGCCACCGCCCAGCCCAGTCCCAGCGAGCAACAGGAGGCCATCGCC
CTGAAGAAGGCGCTCGAGTGGGAGCTGAGTTTGGACGCCAGGGAGCTGCG
TTCCCACGCCTGGTACCACGGCGCACTGCCACGCCAGCGGGCCGAGGAGA
TCGTGCAGCGCGAAGGCGACTTCCTGGTCCGCGACTGCGCCTCCCAGCCG
GACAACTATGTGCTCAGTTGCCGGAGCAAAGCGGCTGTACTGCACTTCGT
ACTTAATAAGTTGGTGCTTCAACCGGAGACGGTTTACGAACGTGTGCAGT
ACCAGTTTGAGGAGGATGCCTTCGATACGGTGCCCGACCTAATTACCTTC
TACGTGGGATCCGGCAAGCCCATCTCGTCAGCATCGGGAGCGCTCATTCA
GTTTCCCTGCAATCGCACCTATCCGCTCTCCTTCTACGGCCACAAGATCG
TGGGCAACCAACTGCACACGCAGATGCTGGCCGGTCTGCGAGGTCTGAGT
CCTCTGAACTCGCCGATGGGCAGCAATGGTGCAGTGGGAGCAGGTATGAA
CGCTACCTTTCGCTTCGAACCGCAGCAGCAGCAGCAGCAACAGCTCTCGC
CGATGGCTGGCTCACCGGCCAGTCCGCACTGCTCGCCGCCGCGGGCGCGT
AGAGAGGTGCCTCCACCGCCGCGGCTGCCGTGCAAGAAGCAACAGCGCTC
CCAGAGCCTCACACCGGCCCAGGCCATGTTGGTCAGCAACATCAACAAGC
TTCAGGAGCAACAACTACAGATGCAGGAGCTCGAGAATGGCAATGGCAAC
GGAATAATGCGCTTCCAGACAATCGCCAGGTGCAATCCGACCAGTGAGCA
GCACCTGGAGAGCAAGTTCACAACCCACTCGCTGCCCAGACCCAACACTT
CGGCGGCGCACGCTCTGCGCCAGCAAGCGGTGGCCCGAATCTCGAGCCTG
GCGAGAAACTGCAGCCTGGACTCGCCGTCGGACTCACGGCCGCCCAGTCC
GCCGCCCAAGCCACGCAAGGAACCCATGGCAGCGGTGCTGGCATACCAGG
CCAGTGGATCCGACTCGGGGAACGGGTCCGGTGATTCGGCTCTAGGGGAT
GCATGTGAGGCGAGCGTACAGCGGGGTGTGATAATCAAGAATCCCCGATT
CATGACCACTTCGGTCTCGAACGGAACGCTGAAGAGCTTCACGGAGTTCG
ACGTCCTGGCCGCTGAGGAAGAACTATTCACCATGGCCATAGAAGAAGTT
AAAACAGCAAGCAAGTTTGACTTTGAGAACTTTGTTACTTTGCTACTGCC
ATCTGTGGAGAACAAGCCCCTGGATGGCGATGCCCTCAACACGTTCAAGA
TGATGCTTCTGGAGACGGGCCCAAAGCTGCTGGCGGAGCACATCACTCGC
ATCGACATTGCCCTGTTTTTGGAGGAGCCGTCGAACGAGGAGGACTACTA
TCTGAGCTGTTCGGGTCTTGAGCTGCTAACACTGCCCCATGGAAAGGTCT
TTAGGGAGGACATAATAGAGCGGACGCAGTGCATCAAGCTGATGGTCGCT
GTGACCATACTCACCTGTCAAACGGATCTGGACCGAGCCCAACTGCTCAG
TAAATGGATTCAGATCGCAGTGGAAACTAAGACGGCTCTCGGCAATCTGT
TTGGATTCTGCGCCATCATGTTGGGCCTGTGCATGCAACAGATCCAAAAG
CTCGACCAGGCCTGGCACATCCTGAGGCAACAGTACACGGACAGCGCCTT
CACCTTCGAGGCCAAGTTGCGACCCACGTTGAGCATCATGAACGAGGCCT
CCAATCCACAGGCTCCAAACACAACCGTTCCCCATGTTCTGCTGTATGCA
CTACTGATCGATCGACCCGTTATGGACATCATAAACCACTCCAACATTGA
CGATCGCCCAGCTCTGTACCACACCTGTATTGCTCCTTGGGAGTCGAAAG
CGGATGACTTTGGCATGACCATTAATTTCCAGCACCTGGATGCATCGCGT
GGCTTCCTGAAGAACTTGGAACTGTATCGAAAGAATGCCAAGATCATCCT
GGAGGATGCTAGTCCTCGGCTCGATGAGCTTCTAGCTGATGCTTTTCGAA
CCGAGTTCCATGTCAAGTTCCTATGGGGCAGTTCCGGAGCAACGGCCAAG
GCCGAAGATCGGCACAACAAACTGGAAAAGGTGCTCACCCTGATGGCCGA
CAAGTTTTGCATGATGGCCGAGCAGGCAAGCTTTCTAGACCAT
BO10335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 2262 | CG9098-PC | 1..2259 | 17..2275 | 11295 | 100 | Plus |
| CG9098-RB | 2262 | CG9098-PB | 1..2259 | 17..2275 | 11295 | 100 | Plus |
| CG9098-RA | 2835 | CG9098-PA | 574..2832 | 17..2275 | 11295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RC | 3470 | CG9098-RC | 665..2923 | 17..2275 | 11295 | 100 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 334..2592 | 17..2275 | 11295 | 100 | Plus |
| CG9098-RA | 3481 | CG9098-RA | 676..2934 | 17..2275 | 11295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6009240..6010242 | 1311..309 | 5000 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6008755..6009189 | 1741..1307 | 2175 | 100 | Minus |
| 2L | 23513712 | 2L | 6008096..6008505 | 2148..1739 | 2050 | 100 | Minus |
| 2L | 23513712 | 2L | 6010309..6010606 | 314..17 | 1475 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6007911..6008038 | 2275..2148 | 640 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 126..157 | 124 | 87.5 | Plus |
BO10335.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:09 Download gff for
BO10335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RB | 1..2262 | 17..2279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:43 Download gff for
BO10335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RB | 297..2568 | 9..2282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:14 Download gff for
BO10335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 676..2934 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:09 Download gff for
BO10335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RB | 297..2568 | 9..2282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:53 Download gff for
BO10335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 676..2934 | 17..2277 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:53 Download gff for
BO10335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6007909..6008037 | 2149..2277 | 98 | <- | Minus |
| 2L | 6008096..6008502 | 1742..2148 | 100 | <- | Minus |
| 2L | 6008755..6009189 | 1307..1741 | 100 | <- | Minus |
| 2L | 6009245..6010240 | 311..1306 | 100 | <- | Minus |
| 2L | 6010313..6010606 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:14 Download gff for
BO10335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6007909..6008037 | 2149..2277 | 98 | <- | Minus |
| arm_2L | 6008096..6008502 | 1742..2148 | 100 | <- | Minus |
| arm_2L | 6008755..6009189 | 1307..1741 | 100 | <- | Minus |
| arm_2L | 6009245..6010240 | 311..1306 | 100 | <- | Minus |
| arm_2L | 6010313..6010606 | 17..310 | 100 | | Minus |
BO10335.pep Sequence
Translation from 16 to 2293
> BO10335.pep
MEGYGSSNATTPLATAQPSPSEQQEAIALKKALEWELSLDARELRSHAWY
HGALPRQRAEEIVQREGDFLVRDCASQPDNYVLSCRSKAAVLHFVLNKLV
LQPETVYERVQYQFEEDAFDTVPDLITFYVGSGKPISSASGALIQFPCNR
TYPLSFYGHKIVGNQLHTQMLAGLRGLSPLNSPMGSNGAVGAGMNATFRF
EPQQQQQQQLSPMAGSPASPHCSPPRARREVPPPPRLPCKKQQRSQSLTP
AQAMLVSNINKLQEQQLQMQELENGNGNGIMRFQTIARCNPTSEQHLESK
FTTHSLPRPNTSAAHALRQQAVARISSLARNCSLDSPSDSRPPSPPPKPR
KEPMAAVLAYQASGSDSGNGSGDSALGDACEASVQRGVIIKNPRFMTTSV
SNGTLKSFTEFDVLAAEEELFTMAIEEVKTASKFDFENFVTLLLPSVENK
PLDGDALNTFKMMLLETGPKLLAEHITRIDIALFLEEPSNEEDYYLSCSG
LELLTLPHGKVFREDIIERTQCIKLMVAVTILTCQTDLDRAQLLSKWIQI
AVETKTALGNLFGFCAIMLGLCMQQIQKLDQAWHILRQQYTDSAFTFEAK
LRPTLSIMNEASNPQAPNTTVPHVLLYALLIDRPVMDIINHSNIDDRPAL
YHTCIAPWESKADDFGMTINFQHLDASRGFLKNLELYRKNAKIILEDASP
RLDELLADAFRTEFHVKFLWGSSGATAKAEDRHNKLEKVLTLMADKFCMM
AEQASFLDH
BO10335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-PC | 753 | CG9098-PC | 1..753 | 1..753 | 3901 | 100 | Plus |
| CG9098-PB | 753 | CG9098-PB | 1..753 | 1..753 | 3901 | 100 | Plus |
| CG9098-PA | 944 | CG9098-PA | 192..944 | 1..753 | 3901 | 100 | Plus |
