Clone BO10336 Report

Search the DGRC for BO10336

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptMED19-RA
Protein status:BO10336.pep: validated full length
Sequenced Size:1045

Clone Sequence Records

BO10336.3prime Sequence

976 bp (830 high quality bases) assembled on 2006-04-19

> BO10336.3prime
ATGGTCTAGAAAGCTTGCAAACTGCGACATAAGCAGACTCCCACCGACGC
CGCCCCCGCCACCACCTCCTCCTCCGCCGCCGCCACCTGGACCGCCACTA
GTGCCCAGCACAGATCCCAGCAGACCGCCACTTGACATCTGCTGTTGCTG
CATGGGCATCTGCTGTTGCTGCTGCATCTGCATCGATGAGGAGAAGCTAT
TCATGTTCCCCACAACGCCAGGTCCCATACTGGCACTAAGGCTGGACAGC
CCGGGTCCTCCAGGTCCTCCTCCCAGCGATCCCAGACTAGTGGCTCCCAT
TACACCCGCTGCTCCGCCCAAGCTCGCTCCTCCGGGCAGCAAGCCCACGC
CCGGTTCGGGGCTCTGGTTTTTCTTTTTACGCTTTTTCTCCTTTTTGCGC
TTCTTGCGCTCCTTGTCGTCCTCATGGCGTTTCTGCTTCTTGTGCTTTTT
CTCGTAAGTCTCCAGGCCGGCCGAGTCGAGCAGCGTGGATTCCTGTCCCG
TGGTCACCCCGTCTTTGTGTTTTTGCTTTTTGTGTTTGTTTTTGTGTTTA
CGCGCAGGTGTGACATATGTGGTACGATACTGTTCCGGCAGCGGTCCGGG
ATGCAAGCGGAATCCGGCCAGCTGCACGGGAGTCAGCGGAAGAAGCTCCT
TTCCACCAATGGGCGGCTTTTCGATCACGCTCCGCAGCGTGCTATTCTCC
ACGGGATGCGTGATGAGGTCGTTAATGCCGGGGATGTTCTGCAGAAACGA
GGCCAGCGACTCCTTGAACTTCTTCTCCTTGAACTTGGTGAGTGTGTGGT
GCAGTCCGTACTCGGTCATGAGATCCTTGTCGCCCGGTAGTTCTGCCTTG
GCGGGTGGTCCTTCATGGAGTAAAATGGCCCCGTGTGAATGATCGTTGGC
GTCTTGCCCAGCGAAATGGTCGTTTTCAGGGTGCCGGATGAGTCTTGACG
GGGCACCACCGGGGGATCGGGCGGCG

BO10336.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5546-PA 1014 MED19-RA 196..1011 834..19 4080 100 Minus
CG5546-PA 1014 MED19-RA 70..170 959..859 480 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1853 CG5546-RB 370..1321 970..19 4640 99.4 Minus
MED19-RA 1763 CG5546-RA 370..1321 970..19 4640 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17844257..17844715 19..477 2295 100 Plus
3L 28110227 3L 17845754..17846122 592..959 1735 98.6 Plus
3L 28110227 3L 17844780..17844895 477..592 580 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:02:08 has no hits.

BO10336.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:47 Download gff for BO10336.3prime
Subject Subject Range Query Range Percent Splice Strand
MED19-PA 54..1014 18..976 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:40 Download gff for BO10336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5546-PA 54..1014 18..976 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:42:16 Download gff for BO10336.3prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 364..1326 13..976 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:17:47 Download gff for BO10336.3prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 364..1326 13..976 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:17:47 Download gff for BO10336.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17845754..17846138 592..976 97   Plus
3L 17844252..17844714 13..476 99 <- Plus
3L 17844780..17844894 477..591 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:42:16 Download gff for BO10336.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17837352..17837814 13..476 99 <- Plus
arm_3L 17837880..17837994 477..591 100 <- Plus
arm_3L 17838854..17839238 592..976 97   Plus

BO10336.5prime Sequence

885 bp (882 high quality bases) assembled on 2006-04-19

> BO10336.5prime
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGACATGAATAGCT
TCTCCTCATCGATGCAGATGCAGCAGCAACAGCAG

BO10336.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5546-PA 1014 MED19-RA 1..823 17..839 4115 100 Plus
CG5546-PA 1014 MED19-RA 824..870 839..885 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1853 CG5546-RB 311..1180 17..885 4325 99.9 Plus
MED19-RA 1763 CG5546-RA 311..1180 17..885 4325 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17845754..17846191 454..17 2190 100 Minus
3L 28110227 3L 17844398..17844715 885..569 1540 99.7 Minus
3L 28110227 3L 17844780..17844895 569..454 580 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:44:08 has no hits.

BO10336.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:48 Download gff for BO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
MED19-PA 1..870 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:42 Download gff for BO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5546-PA 1..870 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:16:26 Download gff for BO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1180 17..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:38 Download gff for BO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1180 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:38 Download gff for BO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17844398..17844714 570..885 99 <- Minus
3L 17844780..17844894 455..569 100 <- Minus
3L 17845754..17846191 17..454 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:16:26 Download gff for BO10336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17837498..17837814 570..885 99 <- Minus
arm_3L 17837880..17837994 455..569 100 <- Minus
arm_3L 17838854..17839291 17..454 100   Minus

BO10336.complete Sequence

1045 bp (1045 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631711

> BO10336.complete
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATGAATAGC
TTCTCCTCATCGATGCAGATGCAGCAGCAACAGCAGATGCCCATGCAGCA
ACAGCAGATGTCAAGTGGCGGTCTGCTGGGATCTGTGCTGGGCACTAGTG
GCGGTCCAGGTGGCGGCGGCGGAGGAGGAGGTGGTGGCGGGGGCGGCGTC
GGTGGGAGTCTGCTTATGTCGCAGTTTGCAAGCTTTCTAGACCAT

BO10336.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1014 CG5546-PB 1..1011 17..1027 5055 100 Plus
MED19-RA 1014 CG5546-PA 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-RB 1853 CG5546-RB 311..1321 17..1027 5055 100 Plus
MED19-RA 1763 CG5546-RA 311..1321 17..1027 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17844257..17844715 1027..569 2295 100 Minus
3L 28110227 3L 17845754..17846191 454..17 2190 100 Minus
3L 28110227 3L 17844780..17844895 569..454 580 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:05:37 has no hits.

BO10336.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:44 Download gff for BO10336.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 1..1014 17..1028 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:20 Download gff for BO10336.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 310..1325 17..1033 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:46 Download gff for BO10336.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1321 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:45 Download gff for BO10336.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 310..1325 17..1033 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:20 Download gff for BO10336.complete
Subject Subject Range Query Range Percent Splice Strand
MED19-RA 311..1321 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:20 Download gff for BO10336.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17844255..17844714 570..1029 99 <- Minus
3L 17844780..17844894 455..569 100 <- Minus
3L 17845754..17846191 17..454 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:46 Download gff for BO10336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17837355..17837814 570..1029 99 <- Minus
arm_3L 17837880..17837994 455..569 100 <- Minus
arm_3L 17838854..17839291 17..454 100   Minus

BO10336.pep Sequence

Translation from 16 to 1045

> BO10336.pep
MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG
PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP
GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ
YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK
RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG
SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS
GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQFASFLDH

BO10336.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
MED19-PB 337 CG5546-PB 1..337 1..337 1764 100 Plus
MED19-PA 337 CG5546-PA 1..337 1..337 1764 100 Plus
Tomosyn-PL 1387 CG17762-PL 652..849 149..331 154 24.5 Plus
Tomosyn-PK 1387 CG17762-PK 652..849 149..331 154 24.5 Plus