Clone Sequence Records
BO10336.3prime Sequence
976 bp (830 high quality bases) assembled on 2006-04-19
> BO10336.3prime
ATGGTCTAGAAAGCTTGCAAACTGCGACATAAGCAGACTCCCACCGACGC
CGCCCCCGCCACCACCTCCTCCTCCGCCGCCGCCACCTGGACCGCCACTA
GTGCCCAGCACAGATCCCAGCAGACCGCCACTTGACATCTGCTGTTGCTG
CATGGGCATCTGCTGTTGCTGCTGCATCTGCATCGATGAGGAGAAGCTAT
TCATGTTCCCCACAACGCCAGGTCCCATACTGGCACTAAGGCTGGACAGC
CCGGGTCCTCCAGGTCCTCCTCCCAGCGATCCCAGACTAGTGGCTCCCAT
TACACCCGCTGCTCCGCCCAAGCTCGCTCCTCCGGGCAGCAAGCCCACGC
CCGGTTCGGGGCTCTGGTTTTTCTTTTTACGCTTTTTCTCCTTTTTGCGC
TTCTTGCGCTCCTTGTCGTCCTCATGGCGTTTCTGCTTCTTGTGCTTTTT
CTCGTAAGTCTCCAGGCCGGCCGAGTCGAGCAGCGTGGATTCCTGTCCCG
TGGTCACCCCGTCTTTGTGTTTTTGCTTTTTGTGTTTGTTTTTGTGTTTA
CGCGCAGGTGTGACATATGTGGTACGATACTGTTCCGGCAGCGGTCCGGG
ATGCAAGCGGAATCCGGCCAGCTGCACGGGAGTCAGCGGAAGAAGCTCCT
TTCCACCAATGGGCGGCTTTTCGATCACGCTCCGCAGCGTGCTATTCTCC
ACGGGATGCGTGATGAGGTCGTTAATGCCGGGGATGTTCTGCAGAAACGA
GGCCAGCGACTCCTTGAACTTCTTCTCCTTGAACTTGGTGAGTGTGTGGT
GCAGTCCGTACTCGGTCATGAGATCCTTGTCGCCCGGTAGTTCTGCCTTG
GCGGGTGGTCCTTCATGGAGTAAAATGGCCCCGTGTGAATGATCGTTGGC
GTCTTGCCCAGCGAAATGGTCGTTTTCAGGGTGCCGGATGAGTCTTGACG
GGGCACCACCGGGGGATCGGGCGGCG
BO10336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5546-PA | 1014 | MED19-RA | 196..1011 | 834..19 | 4080 | 100 | Minus |
CG5546-PA | 1014 | MED19-RA | 70..170 | 959..859 | 480 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1853 | CG5546-RB | 370..1321 | 970..19 | 4640 | 99.4 | Minus |
MED19-RA | 1763 | CG5546-RA | 370..1321 | 970..19 | 4640 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17844257..17844715 | 19..477 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 17845754..17846122 | 592..959 | 1735 | 98.6 | Plus |
3L | 28110227 | 3L | 17844780..17844895 | 477..592 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:02:08 has no hits.
BO10336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:47 Download gff for
BO10336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-PA | 54..1014 | 18..976 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:40 Download gff for
BO10336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5546-PA | 54..1014 | 18..976 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:42:16 Download gff for
BO10336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 364..1326 | 13..976 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:17:47 Download gff for
BO10336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 364..1326 | 13..976 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:17:47 Download gff for
BO10336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17845754..17846138 | 592..976 | 97 | | Plus |
3L | 17844252..17844714 | 13..476 | 99 | <- | Plus |
3L | 17844780..17844894 | 477..591 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:42:16 Download gff for
BO10336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17837352..17837814 | 13..476 | 99 | <- | Plus |
arm_3L | 17837880..17837994 | 477..591 | 100 | <- | Plus |
arm_3L | 17838854..17839238 | 592..976 | 97 | | Plus |
BO10336.5prime Sequence
885 bp (882 high quality bases) assembled on 2006-04-19
> BO10336.5prime
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGACATGAATAGCT
TCTCCTCATCGATGCAGATGCAGCAGCAACAGCAG
BO10336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5546-PA | 1014 | MED19-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
CG5546-PA | 1014 | MED19-RA | 824..870 | 839..885 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1853 | CG5546-RB | 311..1180 | 17..885 | 4325 | 99.9 | Plus |
MED19-RA | 1763 | CG5546-RA | 311..1180 | 17..885 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17845754..17846191 | 454..17 | 2190 | 100 | Minus |
3L | 28110227 | 3L | 17844398..17844715 | 885..569 | 1540 | 99.7 | Minus |
3L | 28110227 | 3L | 17844780..17844895 | 569..454 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:44:08 has no hits.
BO10336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:48 Download gff for
BO10336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:42 Download gff for
BO10336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5546-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:16:26 Download gff for
BO10336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1180 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:38 Download gff for
BO10336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1180 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:38 Download gff for
BO10336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17844398..17844714 | 570..885 | 99 | <- | Minus |
3L | 17844780..17844894 | 455..569 | 100 | <- | Minus |
3L | 17845754..17846191 | 17..454 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:16:26 Download gff for
BO10336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17837498..17837814 | 570..885 | 99 | <- | Minus |
arm_3L | 17837880..17837994 | 455..569 | 100 | <- | Minus |
arm_3L | 17838854..17839291 | 17..454 | 100 | | Minus |
BO10336.complete Sequence
1045 bp (1045 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631711
> BO10336.complete
GAAGTTATCAGTCGACATGATGAGCAACTACGGCAACATGATGGACTCAC
CGAAGTCATCGCCCCACGGCGGCGGCCGATCACCCGTGGTGGCCCGTCAA
GACTCATCCGGCACCCTGAAAACGACCATTTCGCTGGGCAAGACGCCAAC
GATCATTCACACGGGGCCATTTTACTCCATGAAGGAACCACCCGCCAAGG
CAGAACTTACCGGCGACAAGGATCTCATGACCGAGTACGGACTGCACCAC
ACACTCACCAAGTTCAAGGAGAAGAAGTTCAAGGAGTCGCTGGCCTCGTT
TCTGCAGAACATCCCCGGCATTAACGACCTCATCACGCATCCCGTGGAGA
ATAGCACGCTGCGGAGCGTGATCGAAAAGCCGCCCATTGGTGGAAAGGAG
CTTCTTCCGCTGACTCCCGTGCAGCTGGCCGGATTCCGCTTGCATCCCGG
ACCGCTGCCGGAACAGTATCGTACCACATATGTCACACCTGCGCGTAAAC
ACAAAAACAAACACAAAAAGCAAAAACACAAAGACGGGGTGACCACGGGA
CAGGAATCCACGCTGCTCGACTCGGCCGGCCTGGAGACTTACGAGAAAAA
GCACAAGAAGCAGAAACGCCATGAGGACGACAAGGAGCGCAAGAAGCGCA
AAAAGGAGAAAAAGCGTAAAAAGAAAAACCAGAGCCCCGAACCGGGCGTG
GGCTTGCTGCCCGGAGGAGCGAGCTTGGGCGGAGCAGCGGGTGTAATGGG
AGCCACTAGTCTGGGATCGCTGGGAGGAGGACCTGGAGGACCCGGGCTGT
CCAGCCTTAGTGCCAGTATGGGACCTGGCGTTGTGGGGAACATGAATAGC
TTCTCCTCATCGATGCAGATGCAGCAGCAACAGCAGATGCCCATGCAGCA
ACAGCAGATGTCAAGTGGCGGTCTGCTGGGATCTGTGCTGGGCACTAGTG
GCGGTCCAGGTGGCGGCGGCGGAGGAGGAGGTGGTGGCGGGGGCGGCGTC
GGTGGGAGTCTGCTTATGTCGCAGTTTGCAAGCTTTCTAGACCAT
BO10336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1014 | CG5546-PB | 1..1011 | 17..1027 | 5055 | 100 | Plus |
MED19-RA | 1014 | CG5546-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-RB | 1853 | CG5546-RB | 311..1321 | 17..1027 | 5055 | 100 | Plus |
MED19-RA | 1763 | CG5546-RA | 311..1321 | 17..1027 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17844257..17844715 | 1027..569 | 2295 | 100 | Minus |
3L | 28110227 | 3L | 17845754..17846191 | 454..17 | 2190 | 100 | Minus |
3L | 28110227 | 3L | 17844780..17844895 | 569..454 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:05:37 has no hits.
BO10336.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:44 Download gff for
BO10336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 1..1014 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:20 Download gff for
BO10336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 310..1325 | 17..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:46 Download gff for
BO10336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1321 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:45 Download gff for
BO10336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 310..1325 | 17..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:20 Download gff for
BO10336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED19-RA | 311..1321 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:20 Download gff for
BO10336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17844255..17844714 | 570..1029 | 99 | <- | Minus |
3L | 17844780..17844894 | 455..569 | 100 | <- | Minus |
3L | 17845754..17846191 | 17..454 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:46 Download gff for
BO10336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17837355..17837814 | 570..1029 | 99 | <- | Minus |
arm_3L | 17837880..17837994 | 455..569 | 100 | <- | Minus |
arm_3L | 17838854..17839291 | 17..454 | 100 | | Minus |
BO10336.pep Sequence
Translation from 16 to 1045
> BO10336.pep
MMSNYGNMMDSPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTG
PFYSMKEPPAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIP
GINDLITHPVENSTLRSVIEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQ
YRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLETYEKKHKKQK
RHEDDKERKKRKKEKKRKKKNQSPEPGVGLLPGGASLGGAAGVMGATSLG
SLGGGPGGPGLSSLSASMGPGVVGNMNSFSSSMQMQQQQQMPMQQQQMSS
GGLLGSVLGTSGGPGGGGGGGGGGGGGVGGSLLMSQFASFLDH
BO10336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED19-PB | 337 | CG5546-PB | 1..337 | 1..337 | 1764 | 100 | Plus |
MED19-PA | 337 | CG5546-PA | 1..337 | 1..337 | 1764 | 100 | Plus |
Tomosyn-PL | 1387 | CG17762-PL | 652..849 | 149..331 | 154 | 24.5 | Plus |
Tomosyn-PK | 1387 | CG17762-PK | 652..849 | 149..331 | 154 | 24.5 | Plus |