Clone Sequence Records
BO10340.3prime Sequence
953 bp (836 high quality bases) assembled on 2006-04-19
> BO10340.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTGTAGCCGTACGAGTTGATGGTGT
CGAACTCGGTGTCGCACTTGAGCAGCAGCTGGTACCACTGGTCGCTGTCG
ATGCGGCTGGCCTCCCGGAATCCTCCGTAGGCGGCTGGCAGGCACTTGGG
CGACATGTATTTGTGCAGGGACTCGCGATCGGTGCCATGGAAGATGATCC
TGCTGCGCAGCTTCTCCTTGAGGAAGGGCTTGAACAGGGCAAAGACCACC
TGGAAAATCTTCGGCTGGTTCACGATGTGAATGGCCTTGATCCGGAGCGG
CACCGAGTCCTGAAGCCAGTCCACAATGCGCTTGGCGAACGGAGGCGTAA
ACTGCCACGTTTGCTGGAGACTGAGGCCATCCATGTCGAAGATCACAACG
GCTCCGCAGATCTGTGTTTCTGGCTCCAGCATGGCCGCCTCCAGGAAGAG
CACAGCTCCCTTGAACACCTCATCGAGGGTGACCTGCTTGTGCTTCCAGC
GCTTGCCCAGTTCGAGGACCAAAATGCGACGACCCAGTTGATCTCGGTTG
GGGAAGACGGTAAGGATGTTGTGCTTGAAGATGTTGGCCTCGTTCGATGG
CTTCAGGTCGGTGTACACATCCGCGTGCTTCACCTTGAAGGCGTAGTACC
GCTTAATCAGATCACGGGCACTTTCCGGGTAATACTTGCAGGGCCGCAGG
TATCTGATCAGCCACTCCTCGTTTCCCTTGGGGTACAGCAAGTCCGTCTC
CGCTTCTAGAAGACGGGCCAGCTCCTTGGAGGCCTCCTTCTGGCGCTCGG
GTGTTTCGCGCAGCTCCTTGATGGCCACCTCCTTGCCCTGGGCAGTCGGC
TCGCCCAACTCGAACTGGAGCGTGTAGTCGCCCACCTGGAGCGTGGGCAG
TTGGTCGATGTCCGACAGCATGGTGGGTACTCAAAGTGGGAATTCAGAGG
GCA
BO10340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-PB | 975 | CG10237-RB | 38..972 | 953..19 | 4650 | 99.8 | Minus |
| CG10237-PC | 921 | CG10237-RC | 5..918 | 932..19 | 4570 | 100 | Minus |
| CG10237-PA | 906 | CG10237-RA | 1..903 | 921..19 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RB | 1457 | CG10237-RB | 224..1158 | 953..19 | 4660 | 99.9 | Minus |
| CG10237-RE | 2011 | CG10237-RE | 799..1712 | 932..19 | 4570 | 100 | Minus |
| CG10237-RD | 1720 | CG10237-RD | 508..1421 | 932..19 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436149..19436633 | 19..503 | 2425 | 100 | Plus |
| 2L | 23513712 | 2L | 19437666..19437845 | 753..932 | 900 | 100 | Plus |
| 2L | 23513712 | 2L | 19436810..19436964 | 504..658 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 19437032..19437128 | 658..754 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:06:55 has no hits.
BO10340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:55 Download gff for
BO10340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-PB | 39..975 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:50 Download gff for
BO10340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-PB | 39..975 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:24:10 Download gff for
BO10340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 225..1164 | 12..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:01:35 Download gff for
BO10340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 225..1164 | 12..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:01:35 Download gff for
BO10340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19436143..19436633 | 12..503 | 99 | <- | Plus |
| 2L | 19436810..19436963 | 504..657 | 100 | <- | Plus |
| 2L | 19437032..19437126 | 658..752 | 100 | <- | Plus |
| 2L | 19437666..19437845 | 753..932 | 100 | <- | Plus |
| 2L | 19440664..19440683 | 933..952 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:24:10 Download gff for
BO10340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19436143..19436633 | 12..503 | 99 | <- | Plus |
| arm_2L | 19436810..19436963 | 504..657 | 100 | <- | Plus |
| arm_2L | 19437032..19437126 | 658..752 | 100 | <- | Plus |
| arm_2L | 19437666..19437845 | 753..932 | 100 | <- | Plus |
| arm_2L | 19440664..19440683 | 933..952 | 95 | | Plus |
BO10340.5prime Sequence
784 bp (783 high quality bases) assembled on 2006-04-19
> BO10340.5prime
GAAGTTATCAGTCGACATGACCATGCTGACCACTGCATCTGCGATGAGGT
GCCTGCCCTCTGAATTCCCACTTGGAGTACCCACCATGCTGTCGGACATC
GACCAACTGCCCACGCTCCAGGTGGGCGACTACACGCTCCAGTTCGAGTT
GGGCGAGCCGACTGCCCAGGGCAAGGAGGTGGCCATCAAGGAGCTGCGCG
AAACACCCGAGCGCCAGAAGGAGGCCTCCAAGGAGCTGGCCCGTCTTCTA
GAAGCGGAGACGGACTTGCTGTACCCCAAGGGAAACGAGGAGTGGCTGAT
CAGATACCTGCGGCCCTGCAAGTATTACCCGGAAAGTGCCCGTGATCTGA
TTAAGCGGTACTACGCCTTCAAGGTGAAGCACGCGGATGTGTACACCGAC
CTGAAGCCATCGAACGAGGCCAACATCTTCAAGCACAACATCCTTACCGT
CTTCCCCAACCGAGATCAACTGGGTCGTCGCATTTTGGTCCTCGAACTGG
GCAAGCGCTGGAAGCACAAGCAGGTCACCCTCGATGAGGTGTTCAAGGGA
GCTGTGCTCTTCCTGGAGGCGGCCATGCTGGAGCCAGAAACACAGATCTG
CGGAGCCGTTGTGATCTTCGACATGGATGGCCTCAGTCTCCAGCAAACGT
GGCAGTTTACGCCTCCGTTCGCCAAGCGCATTGTGGACTGGCTTCAGGAC
TCGGTGCCGCTCCGGATCAAGGCCATTCACATCGTGAACCAGCCGAAGAT
TTTCCAGGTGGTCTTTGCCCTGTTCAAGCCCTTC
BO10340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-PB | 975 | CG10237-RB | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG10237-PC | 921 | CG10237-RC | 5..714 | 75..784 | 3550 | 100 | Plus |
| CG10237-PA | 906 | CG10237-RA | 1..699 | 86..784 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RB | 1457 | CG10237-RB | 182..954 | 12..784 | 3850 | 99.9 | Plus |
| CG10237-RD | 1720 | CG10237-RD | 507..1217 | 74..784 | 3555 | 100 | Plus |
| CG10237-RA | 1338 | CG10237-RA | 125..835 | 74..784 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436353..19436633 | 784..504 | 1405 | 100 | Minus |
| 2L | 23513712 | 2L | 19437666..19437846 | 254..74 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 19436810..19436964 | 503..349 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 19437032..19437128 | 349..253 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 19440663..19440726 | 75..12 | 305 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:44:18 has no hits.
BO10340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:36:56 Download gff for
BO10340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-PB | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:52 Download gff for
BO10340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-PB | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:16:28 Download gff for
BO10340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 180..954 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:40 Download gff for
BO10340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 180..954 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:40 Download gff for
BO10340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19437666..19437845 | 75..254 | 100 | <- | Minus |
| 2L | 19440664..19440728 | 9..74 | 96 | | Minus |
| 2L | 19436353..19436633 | 504..784 | 100 | <- | Minus |
| 2L | 19436810..19436963 | 350..503 | 100 | <- | Minus |
| 2L | 19437032..19437126 | 255..349 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:16:28 Download gff for
BO10340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19436353..19436633 | 504..784 | 100 | <- | Minus |
| arm_2L | 19436810..19436963 | 350..503 | 100 | <- | Minus |
| arm_2L | 19437032..19437126 | 255..349 | 100 | <- | Minus |
| arm_2L | 19437666..19437845 | 75..254 | 100 | <- | Minus |
| arm_2L | 19440664..19440728 | 9..74 | 96 | | Minus |
BO10340.complete Sequence
1006 bp (1006 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631712
> BO10340.complete
GAAGTTATCAGTCGACATGACCATGCTGACCACTGCATCTGCGATGAGGT
GCCTGCCCTCTGAATTCCCACTTGGAGTACCCACCATGCTGTCGGACATC
GACCAACTGCCCACGCTCCAGGTGGGCGACTACACGCTCCAGTTCGAGTT
GGGCGAGCCGACTGCCCAGGGCAAGGAGGTGGCCATCAAGGAGCTGCGCG
AAACACCCGAGCGCCAGAAGGAGGCCTCCAAGGAGCTGGCCCGTCTTCTA
GAAGCGGAGACGGACTTGCTGTACCCCAAGGGAAACGAGGAGTGGCTGAT
CAGATACCTGCGGCCCTGCAAGTATTACCCGGAAAGTGCCCGTGATCTGA
TTAAGCGGTACTACGCCTTCAAGGTGAAGCACGCGGATGTGTACACCGAC
CTGAAGCCATCGAACGAGGCCAACATCTTCAAGCACAACATCCTTACCGT
CTTCCCCAACCGAGATCAACTGGGTCGTCGCATTTTGGTCCTCGAACTGG
GCAAGCGCTGGAAGCACAAGCAGGTCACCCTCGATGAGGTGTTCAAGGGA
GCTGTGCTCTTCCTGGAGGCGGCCATGCTGGAGCCAGAAACACAGATCTG
CGGAGCCGTTGTGATCTTCGACATGGATGGCCTCAGTCTCCAGCAAACGT
GGCAGTTTACGCCTCCGTTCGCCAAGCGCATTGTGGACTGGCTTCAGGAC
TCGGTGCCGCTCCGGATCAAGGCCATTCACATCGTGAACCAGCCGAAGAT
TTTCCAGGTGGTCTTTGCCCTGTTCAAGCCCTTCCTCAAGGAGAAGCTGC
GCAGCAGGATCATCTTCCATGGCACCGATCGCGAGTCCCTGCACAAATAC
ATGTCGCCCAAGTGCCTGCCAGCCGCCTACGGAGGATTCCGGGAGGCCAG
CCGCATCGACAGCGACCAGTGGTACCAGCTGCTGCTCAAGTGCGACACCG
AGTTCGACACCATCAACTCGTACGGCTACAAGAAGAAGGCAAGCTTTCTA
GACCAT
BO10340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RB | 975 | CG10237-PB | 1..972 | 17..988 | 4860 | 100 | Plus |
| CG10237-RE | 921 | CG10237-PE | 5..918 | 75..988 | 4570 | 100 | Plus |
| CG10237-RC | 921 | CG10237-PC | 5..918 | 75..988 | 4570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-RB | 1457 | CG10237-RB | 182..1158 | 12..988 | 4870 | 99.9 | Plus |
| CG10237-RD | 1720 | CG10237-RD | 507..1421 | 74..988 | 4575 | 100 | Plus |
| CG10237-RA | 1338 | CG10237-RA | 125..1039 | 74..988 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19436149..19436633 | 988..504 | 2425 | 100 | Minus |
| 2L | 23513712 | 2L | 19437666..19437846 | 254..74 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 19436810..19436964 | 503..349 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 19437032..19437128 | 349..253 | 485 | 100 | Minus |
| 2L | 23513712 | 2L | 19440663..19440726 | 75..12 | 305 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:40:26 has no hits.
BO10340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:20 Download gff for
BO10340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 1..975 | 17..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:31 Download gff for
BO10340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 138..1122 | 9..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:56 Download gff for
BO10340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 187..1158 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:20 Download gff for
BO10340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 138..1122 | 9..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:37 Download gff for
BO10340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10237-RB | 187..1158 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:37 Download gff for
BO10340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19436810..19436963 | 350..503 | 100 | <- | Minus |
| 2L | 19437032..19437126 | 255..349 | 100 | <- | Minus |
| 2L | 19437666..19437845 | 75..254 | 100 | <- | Minus |
| 2L | 19440664..19440721 | 17..74 | 100 | | Minus |
| 2L | 19436146..19436633 | 504..990 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:56 Download gff for
BO10340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19436146..19436633 | 504..990 | 99 | <- | Minus |
| arm_2L | 19436810..19436963 | 350..503 | 100 | <- | Minus |
| arm_2L | 19437032..19437126 | 255..349 | 100 | <- | Minus |
| arm_2L | 19437666..19437845 | 75..254 | 100 | <- | Minus |
| arm_2L | 19440664..19440721 | 17..74 | 100 | | Minus |
BO10340.pep Sequence
Translation from 16 to 1006
> BO10340.pep
MTMLTTASAMRCLPSEFPLGVPTMLSDIDQLPTLQVGDYTLQFELGEPTA
QGKEVAIKELRETPERQKEASKELARLLEAETDLLYPKGNEEWLIRYLRP
CKYYPESARDLIKRYYAFKVKHADVYTDLKPSNEANIFKHNILTVFPNRD
QLGRRILVLELGKRWKHKQVTLDEVFKGAVLFLEAAMLEPETQICGAVVI
FDMDGLSLQQTWQFTPPFAKRIVDWLQDSVPLRIKAIHIVNQPKIFQVVF
ALFKPFLKEKLRSRIIFHGTDRESLHKYMSPKCLPAAYGGFREASRIDSD
QWYQLLLKCDTEFDTINSYGYKKKASFLDH
BO10340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10237-PB | 324 | CG10237-PB | 1..324 | 1..324 | 1699 | 100 | Plus |
| CG10237-PE | 306 | CG10237-PE | 3..306 | 21..324 | 1596 | 100 | Plus |
| CG10237-PC | 306 | CG10237-PC | 3..306 | 21..324 | 1596 | 100 | Plus |
| CG10237-PD | 301 | CG10237-PD | 1..301 | 24..324 | 1580 | 100 | Plus |
| CG10237-PA | 301 | CG10237-PA | 1..301 | 24..324 | 1580 | 100 | Plus |
