Clone Sequence Records
BO10344.3prime Sequence
928 bp (858 high quality bases) assembled on 2006-04-19
> BO10344.3prime
ATGGTCTAGAAAGCTTGCCTCCTGGCAGACGAGGTCCTGCAGCTGGCGCA
GTTCCTCTCCAGGGGGTAGCAGATCGTCCAGATAGTCGCAAAACGACAAA
CAGATGGCGTACAGACTGCGTCGCACTGCGCATCGAAGCACGTTAAAGCT
AGAGCTGGATATCCTTATGTTGCCTATCACGCTACTTAGCTTATCTAGCT
CATTTCGCAGCTTGTTGATCGCCTTGATGATAGCAGGCAAATCGTTCTGC
ACTACTCCATATGGATCCTCTTTGAGCGAGGCTGCGCACACCTGAGCCAG
AGCCTGAGTCATATACACTACGGGCAGGGAGTTGGCCAGCAGAAACGTCG
TCTTGGCACCTTCGGGTTCGTTGAATAAGTACACAATGCCGGGAACGCGC
TGTAGCAACCGTTGTAGGGACTGCTCCAACTGCGTGGATACACGCTCACA
CCAGTTGGGAAAATGACGGATGCCATCCGCTGGACTTTCAACAGCAACCT
CGCGACTGGGCGATACAATGGGTCGAATGCCGTGTTTCTGGTTGTATTGC
CGCAGCAACACCTTCTCGGCCATCAAGCTAGTTGTAAGCGATTCGGTTAT
CTTCGGCATCGGCAGACTCTGGGCGCACTTGAGTATACTTATCTTCTGCA
TCGACTCGGTTAGTTCTTCGGTAAAGCTGCCGAGAATGCTCAAGCATTGG
TCGCAGAGGGAGCGCCAACTTGCTGGCCGGTTACCCGGCTCAGTCAGCTG
GAATATCTCTGCCCGTTGTGGCGAGTTCTTTCGCAACGCCAGCTTGTAGA
AATGATGAGCAGCAAGGCACTGCACTACATACACATTGAAAACTCCGAGA
CCCGCTACCAGGGTATATCCTGTTCATGGGCAAAGCAGCTCGCGGTTTAG
TCACCACCAGTGGCAAATCTCCGAGAGC
BO10344.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5857-PA | 1737 | CG5857-RA | 893..1734 | 860..19 | 4210 | 100 | Minus |
| CG5857-PA | 1737 | CG5857-RA | 832..869 | 919..882 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-RA | 1978 | CG5857-RA | 967..1879 | 928..19 | 4475 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23925435..23926337 | 919..19 | 4400 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:54:35 has no hits.
BO10344.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:01 Download gff for
BO10344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-PA | 822..1737 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:58 Download gff for
BO10344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-PA | 822..1737 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:21 Download gff for
BO10344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 967..1882 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:05 Download gff for
BO10344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 967..1882 | 15..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:05 Download gff for
BO10344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23925425..23926340 | 15..928 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:21 Download gff for
BO10344.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19751147..19752062 | 15..928 | 99 | | Minus |
BO10344.5prime Sequence
901 bp (771 high quality bases) assembled on 2006-04-19
> BO10344.5prime
GAAGTTATCAGTCGACATGTCTGCTAGCTCCTCCAGCAACGCTTGCAAGC
TCTTGCTGCTCGGCCGCTGCCTGCGCGCCGTGCTCCTCAGCGTGGCCATC
CAATTCCTGCTGCTCACAGTGTTCCTGCTGTTTGTGAACTTCCAACTGTT
GCATCCGCTCGCCTGGGTGACGGGAACACTGCGTCTGGTAGCCAGTTGGT
ACACCTGGTTTGCCAGCATCCCTCTGGTGGCCTCCGTCGTGCTCTACGGT
GTGATTCTTTGCCAGCAGCACTTGTCGGAGCGACGCTACTGCCCAACCCG
CTACCGGTGGCTCCTGCACTACGGTCCACGCAAGGTGCTCTTTCTGTTCG
CCCACCTTCTGGTCGGTCTGCTGACCGCCTGGCTCTACACGGGCTATCTG
CACACAGACTATCAACACCTGAAATATAAGTGCTATGGCCAGGATTGCAT
TAGTGCTTACAATGTCTATCTATTAGGCATCGGTATGACCGCCGGCTGCT
ACTACTTTGTCTCCGTTCACATGCGCAAGGAGATCTCCATTGAATTTCCC
ATTGTGGAGCAATCGCGGGCGGAGAAGATGCGAGAGCTGCTCTACGCCAG
TTTGGCCAAATCTCTATTAAGTTCGCTGCTGCCTACGATCAGTTACACCG
CCGTATTTTGTCTTTTCGGACCCATGGTATGCCACAGACTTAGTCACATT
CTCTCTGTGGACATGGACGAGCGACTGGATGGATTCTTCGGAGTTGTTAC
CAATGTGCGCCTGCTTTTTTACGGCTATTTGCTGACCGCACAGATTTTGA
GCAACATGCACCTAATGCGTTGCTTTTACGGCATTCTGCTCTCGGAGGAT
TTGCCACTGGTGGTGACTAAACCGCGAGCTGCTTTTGCCCATGAACAGGA
T
BO10344.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5857-PA | 1737 | CG5857-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-RA | 1978 | CG5857-RA | 144..1030 | 15..901 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23925002..23925488 | 415..901 | 2435 | 100 | Plus |
| 3R | 32079331 | 3R | 23924542..23924941 | 15..414 | 2000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:44:24 has no hits.
BO10344.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:02 Download gff for
BO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:49:59 Download gff for
BO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:36 Download gff for
BO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 144..1030 | 15..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:12 Download gff for
BO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 144..1030 | 15..901 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:12 Download gff for
BO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23924542..23924941 | 15..414 | 100 | -> | Plus |
| 3R | 23925002..23925488 | 415..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:36 Download gff for
BO10344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19750264..19750663 | 15..414 | 100 | -> | Plus |
| arm_3R | 19750724..19751210 | 415..901 | 100 | | Plus |
BO10344.complete Sequence
1768 bp (1768 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631713
> BO10344.complete
GAAGTTATCAGTCGACATGTCTGCTAGCTCCTCCAGCAACGCTTGCAAGC
TCTTGCTGCTCGGCCGCTGCCTGCGCGCCGTGCTCCTCAGCGTGGCCATC
CAATTCCTGCTGCTCACAGTGTTCCTGCTGTTTGTGAACTTCCAACTGTT
GCATCCGCTCGCCTGGGTGACGGGAACACTGCGTCTGGTAGCCAGTTGGT
ACACCTGGTTTGCCAGCATCCCTCTGGTGGCCTCCGTCGTGCTCTACGGT
GTGATTCTTTGCCAGCAGCACTTGTCGGAGCGACGCTACTGCCCAACCCG
CTACCGGTGGCTCCTGCACTACGGTCCACGCAAGGTGCTCTTTCTGTTCG
CCCACCTTCTGGTCGGTCTGCTGACCGCCTGGCTCTACACGGGCTATCTG
CACACAGACTATCAACACCTGAAATATAAGTGCTATGGCCAGGATTGCAT
TAGTGCTTACAATGTCTATCTATTAGGCATCGGTATGACCGCCGGCTGCT
ACTACTTTGTCTCCGTTCACATGCGCAAGGAGATCTCCATTGAATTTCCC
ATTGTGGAGCAATCGCGGGCGGAGAAGATGCGAGAGCTGCTCTACGCCAG
TTTGGCCAAATCTCTATTAAGTTCGCTGCTGCCTACGATCAGTTACACCG
CCGTATTTTGTCTTTTCGGACCCATGGTATGCCACAGACTTAGTCACATT
CTCTCTGTGGACATGGACGAGCGACTGGATGGATTCTTCGGAGTTGTTAC
CAATGTGCGCCTGCTTTTTTACGGCTATTTGCTGACCGCACAGATTTTGA
GCAACATGCACCTAATGCGTTGCTTTTACGGCATTCTGCTCTCGGAGGAT
TTGCCACTGGTGGTGACTAAACCGCGAGCTGCTTTTGCCCATGAACAGGA
TATAACCTTGGTAGCGGGTCTCGGAGTTTTCAATGTGTATGTAGTGCAGT
GCCTTGCTGCTCATCATTTCTACAAGCTGGCGTTGCGAAAGAACTCGCCA
CAACGGGCAGAGATATTCCAGCTGACTGAGCCGGGTAACCGGCCAGCAAG
TTGGCGCTCCCTCTGCGACCAATGCTTGAGCATTCTCGGCAGCTTTACCG
AAGAACTAACCGAGTCGATGCAGAAGATAAGTATACTCAAGTGCGCCCAG
AGTCTGCCGATGCCGAAGATAACCGAATCGCTTACAACTAGCTTGATGGC
CGAGAAGGTGTTGCTGCGGCAATACAACCAGAAACACGGCATTCGACCCA
TTGTATCGCCCAGTCGCGAGGTTGCTGTTGAAAGTCCAGCGGATGGCATC
CGTCATTTTCCCAACTGGTGTGAGCGTGTATCCACGCAGTTGGAGCAGTC
CCTACAACGGTTGCTACAGCGCGTTCCCGGCATTGTGTACTTATTCAACG
AACCCGAAGGTGCCAAGACGACGTTTCTGCTGGCCAACTCCCTGCCCGTA
GTGTATATGACTCAGGCTCTGGCTCAGGTGTGCGCAGCCTCGCTCAAAGA
GGATCCATATGGAGTAGTGCAGAACGATTTGCCTGCTATCATCAAGGCGA
TCAACAAGCTGCGAAATGAGCTAGATAAGCTAAGTAGCGTGATAGGCAAC
ATAAGGATATCCAGCTCTAGCTTTAACGTGCTTCGATGCGCAGTGCGACG
CAGTCTGTACGCCATCTGTTTGTCGTTTTGCGACTATCTGGACGATCTGC
TACCCCCTGGAGAGGAACTGCGCCAGCTGCAGGACCTCGTCTGCCAGGAG
GCAAGCTTTCTAGACCAT
BO10344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-RA | 1737 | CG5857-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-RA | 1978 | CG5857-RA | 144..1879 | 15..1750 | 8680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23925002..23926337 | 415..1750 | 6680 | 100 | Plus |
| 3R | 32079331 | 3R | 23924542..23924941 | 15..414 | 2000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:22:52 has no hits.
BO10344.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:12 Download gff for
BO10344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-RA | 1..1737 | 17..1754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:46 Download gff for
BO10344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-RA | 140..1878 | 15..1754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:29 Download gff for
BO10344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 146..1879 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:12 Download gff for
BO10344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5857-RA | 140..1878 | 15..1754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:09 Download gff for
BO10344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndc1-RA | 146..1879 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:09 Download gff for
BO10344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23924544..23924941 | 17..414 | 100 | -> | Plus |
| 3R | 23925002..23926337 | 415..1752 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:29 Download gff for
BO10344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19750266..19750663 | 17..414 | 100 | -> | Plus |
| arm_3R | 19750724..19752059 | 415..1752 | 99 | | Plus |
BO10344.pep Sequence
Translation from 16 to 1768
> BO10344.pep
MSASSSSNACKLLLLGRCLRAVLLSVAIQFLLLTVFLLFVNFQLLHPLAW
VTGTLRLVASWYTWFASIPLVASVVLYGVILCQQHLSERRYCPTRYRWLL
HYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKCYGQDCISAYNV
YLLGIGMTAGCYYFVSVHMRKEISIEFPIVEQSRAEKMRELLYASLAKSL
LSSLLPTISYTAVFCLFGPMVCHRLSHILSVDMDERLDGFFGVVTNVRLL
FYGYLLTAQILSNMHLMRCFYGILLSEDLPLVVTKPRAAFAHEQDITLVA
GLGVFNVYVVQCLAAHHFYKLALRKNSPQRAEIFQLTEPGNRPASWRSLC
DQCLSILGSFTEELTESMQKISILKCAQSLPMPKITESLTTSLMAEKVLL
RQYNQKHGIRPIVSPSREVAVESPADGIRHFPNWCERVSTQLEQSLQRLL
QRVPGIVYLFNEPEGAKTTFLLANSLPVVYMTQALAQVCAASLKEDPYGV
VQNDLPAIIKAINKLRNELDKLSSVIGNIRISSSSFNVLRCAVRRSLYAI
CLSFCDYLDDLLPPGEELRQLQDLVCQEASFLDH
BO10344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndc1-PA | 578 | CG5857-PA | 1..578 | 1..578 | 2989 | 100 | Plus |
| CG32246-PB | 565 | CG32246-PB | 18..545 | 11..559 | 244 | 20.8 | Plus |
