Clone BO10346 Report

Search the DGRC for BO10346

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptSyx1A-RA
Protein status:BO10346.pep: validated full length
Sequenced Size:907

Clone Sequence Records

BO10346.3prime Sequence

905 bp (773 high quality bases) assembled on 2006-04-19

> BO10346.3prime
ATGGTCTAGAAAGCTTGCCATGAAATAACTGCTAACATATGAGGCCGCTA
AGATGCCCAGCACAGTGAGGCAGATCAGTATCATGATCTTCTTTCGTCGG
GCTTTACTCTGGTACTTGAGCGCCTTCTTGGTGTCCTGAGTTGCCGTCTG
CACATAGTCCATAGCGTGCTCCACATGGTACTCAATGCGATCGATCATCT
CGCCCTGCGACTCCACCAGCATGGCCATGTCCATGAACATGTCGTGCAGC
TCCTTGATCGATGTCTCCAGCTTCATGATGTCCTGGTGGCGGGCCTCAAT
GTCCGCCAGCGTCTGTTTGGCCTGCTGCGTCTCCATGATGATGCCCTGCG
TGAACACAGACGAGTTGCCCTCCTCCAGCATCTTCTCCAGCTCATCGTCG
TTGGTCGGTCGTCCGGTAATCTCCAGTTGACGCTGTATCCTTCCCTTGCA
GCGCTCTCGGTAGTCGGTCTGCGTGCGATTGTACTCGGTCATCACTTCGA
CGAATTTCCGTGACAACGTCGAGTGCTGCGTCTTCCGAATTCTCAGATCC
GCCGACGACTTATTCTGCTGCTCTTCCTGCTCGATGTTCTGCTCGATGCC
CTTGAGCTTGCCGCGAACGCGATTGGCATTCTTCTTGATGTCGGCCATCA
GATCCTCCAGCTCTTGCTTGGTCTTCTCGTCCGTTTGTGGGGCGGACAGG
ATGGCCGAGTGCTTCTTCTTTACCTCCTCGACGTTATCCTGCACCTTGTC
GATCATCCCGCGGATCTCCTCCACCTGGGCGAAGAAGTCGTCCATGTAGG
AATCATGGCCATCCACATTGACGGCCACCTCCGTCTCCTCCTCGTCATCG
GATTGGGCGGCATGGAGAGCGGCTAATCTGTCTTTAGTCATGTCGACTGA
TAACT

BO10346.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31136-PA 876 Syx1A-RA 1..873 891..19 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 2385 CG31136-RA 1321..2193 891..19 4365 100 Minus
Syx1A-RB 2639 CG31136-RB 1321..2192 891..20 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24103571..24104443 19..891 4365 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:35:26 has no hits.

BO10346.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:04 Download gff for BO10346.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-PA 1..876 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:03 Download gff for BO10346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31136-PA 1..876 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:43:47 Download gff for BO10346.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2200 12..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:33 Download gff for BO10346.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2200 12..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:33 Download gff for BO10346.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24103564..24104443 12..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:43:47 Download gff for BO10346.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19929286..19930165 12..891 99   Plus

BO10346.5prime Sequence

769 bp (699 high quality bases) assembled on 2006-04-19

> BO10346.5prime
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGGCACT

BO10346.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31136-PA 876 Syx1A-RA 1..748 17..764 3740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RB 2639 CG31136-RB 1321..2068 17..764 3740 100 Plus
Syx1A-RA 2385 CG31136-RA 1321..2068 17..764 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24103696..24104443 764..17 3740 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:27:59 has no hits.

BO10346.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:06 Download gff for BO10346.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-PA 1..753 17..769 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:05 Download gff for BO10346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31136-PA 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:28 Download gff for BO10346.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2073 17..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:51 Download gff for BO10346.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2073 17..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:51 Download gff for BO10346.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24103691..24104443 17..769 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:28 Download gff for BO10346.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19929413..19930165 17..769 99   Minus

BO10346.complete Sequence

907 bp (907 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631714

> BO10346.complete
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGCAACTCAGGACACCAAGAAGGCGCTCAAGTACCAGA
GTAAAGCCCGACGAAAGAAGATCATGATACTGATCTGCCTCACTGTGCTG
GGCATCTTAGCGGCCTCATATGTTAGCAGTTATTTCATGGCAAGCTTTCT
AGACCAT

BO10346.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 876 CG31136-PA 1..873 17..889 4365 100 Plus
Syx1A-RB 891 CG31136-PB 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-RA 2385 CG31136-RA 1321..2193 17..889 4365 100 Plus
Syx1A-RB 2639 CG31136-RB 1321..2192 17..888 4360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24103571..24104443 889..17 4365 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:48:34 has no hits.

BO10346.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:55 Download gff for BO10346.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1..876 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:02 Download gff for BO10346.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1301..2180 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:31 Download gff for BO10346.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2193 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:55 Download gff for BO10346.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1301..2180 17..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:08 Download gff for BO10346.complete
Subject Subject Range Query Range Percent Splice Strand
Syx1A-RA 1321..2193 17..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:08 Download gff for BO10346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24103569..24104443 17..891 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:31 Download gff for BO10346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19929291..19930165 17..891 99   Minus

BO10346.pep Sequence

Translation from 16 to 907

> BO10346.pep
MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV
QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE
QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG
RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA
RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA
TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFMASFLDH

BO10346.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Syx1A-PA 291 CG31136-PA 1..291 1..291 1462 100 Plus
Syx1A-PB 296 CG31136-PB 1..291 1..291 1458 99.7 Plus
Syx4-PA 333 CG2715-PA 65..322 14..278 267 23.4 Plus
Syx4-PB 257 CG2715-PB 4..246 29..278 265 24 Plus
Syx7-PB 282 CG5081-PB 22..267 35..283 161 23.1 Plus