Clone Sequence Records
BO10346.3prime Sequence
905 bp (773 high quality bases) assembled on 2006-04-19
> BO10346.3prime
ATGGTCTAGAAAGCTTGCCATGAAATAACTGCTAACATATGAGGCCGCTA
AGATGCCCAGCACAGTGAGGCAGATCAGTATCATGATCTTCTTTCGTCGG
GCTTTACTCTGGTACTTGAGCGCCTTCTTGGTGTCCTGAGTTGCCGTCTG
CACATAGTCCATAGCGTGCTCCACATGGTACTCAATGCGATCGATCATCT
CGCCCTGCGACTCCACCAGCATGGCCATGTCCATGAACATGTCGTGCAGC
TCCTTGATCGATGTCTCCAGCTTCATGATGTCCTGGTGGCGGGCCTCAAT
GTCCGCCAGCGTCTGTTTGGCCTGCTGCGTCTCCATGATGATGCCCTGCG
TGAACACAGACGAGTTGCCCTCCTCCAGCATCTTCTCCAGCTCATCGTCG
TTGGTCGGTCGTCCGGTAATCTCCAGTTGACGCTGTATCCTTCCCTTGCA
GCGCTCTCGGTAGTCGGTCTGCGTGCGATTGTACTCGGTCATCACTTCGA
CGAATTTCCGTGACAACGTCGAGTGCTGCGTCTTCCGAATTCTCAGATCC
GCCGACGACTTATTCTGCTGCTCTTCCTGCTCGATGTTCTGCTCGATGCC
CTTGAGCTTGCCGCGAACGCGATTGGCATTCTTCTTGATGTCGGCCATCA
GATCCTCCAGCTCTTGCTTGGTCTTCTCGTCCGTTTGTGGGGCGGACAGG
ATGGCCGAGTGCTTCTTCTTTACCTCCTCGACGTTATCCTGCACCTTGTC
GATCATCCCGCGGATCTCCTCCACCTGGGCGAAGAAGTCGTCCATGTAGG
AATCATGGCCATCCACATTGACGGCCACCTCCGTCTCCTCCTCGTCATCG
GATTGGGCGGCATGGAGAGCGGCTAATCTGTCTTTAGTCATGTCGACTGA
TAACT
BO10346.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31136-PA | 876 | Syx1A-RA | 1..873 | 891..19 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RA | 2385 | CG31136-RA | 1321..2193 | 891..19 | 4365 | 100 | Minus |
Syx1A-RB | 2639 | CG31136-RB | 1321..2192 | 891..20 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24103571..24104443 | 19..891 | 4365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:35:26 has no hits.
BO10346.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:04 Download gff for
BO10346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-PA | 1..876 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:03 Download gff for
BO10346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31136-PA | 1..876 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:43:47 Download gff for
BO10346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2200 | 12..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:33 Download gff for
BO10346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2200 | 12..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:33 Download gff for
BO10346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24103564..24104443 | 12..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:43:47 Download gff for
BO10346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19929286..19930165 | 12..891 | 99 | | Plus |
BO10346.5prime Sequence
769 bp (699 high quality bases) assembled on 2006-04-19
> BO10346.5prime
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGGCACT
BO10346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31136-PA | 876 | Syx1A-RA | 1..748 | 17..764 | 3740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RB | 2639 | CG31136-RB | 1321..2068 | 17..764 | 3740 | 100 | Plus |
Syx1A-RA | 2385 | CG31136-RA | 1321..2068 | 17..764 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24103696..24104443 | 764..17 | 3740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:27:59 has no hits.
BO10346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:06 Download gff for
BO10346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:05 Download gff for
BO10346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31136-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:28 Download gff for
BO10346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2073 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:51 Download gff for
BO10346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2073 | 17..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:51 Download gff for
BO10346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24103691..24104443 | 17..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:28 Download gff for
BO10346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19929413..19930165 | 17..769 | 99 | | Minus |
BO10346.complete Sequence
907 bp (907 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631714
> BO10346.complete
GAAGTTATCAGTCGACATGACTAAAGACAGATTAGCCGCTCTCCATGCCG
CCCAATCCGATGACGAGGAGGAGACGGAGGTGGCCGTCAATGTGGATGGC
CATGATTCCTACATGGACGACTTCTTCGCCCAGGTGGAGGAGATCCGCGG
GATGATCGACAAGGTGCAGGATAACGTCGAGGAGGTAAAGAAGAAGCACT
CGGCCATCCTGTCCGCCCCACAAACGGACGAGAAGACCAAGCAAGAGCTG
GAGGATCTGATGGCCGACATCAAGAAGAATGCCAATCGCGTTCGCGGCAA
GCTCAAGGGCATCGAGCAGAACATCGAGCAGGAAGAGCAGCAGAATAAGT
CGTCGGCGGATCTGAGAATTCGGAAGACGCAGCACTCGACGTTGTCACGG
AAATTCGTCGAAGTGATGACCGAGTACAATCGCACGCAGACCGACTACCG
AGAGCGCTGCAAGGGAAGGATACAGCGTCAACTGGAGATTACCGGACGAC
CGACCAACGACGATGAGCTGGAGAAGATGCTGGAGGAGGGCAACTCGTCT
GTGTTCACGCAGGGCATCATCATGGAGACGCAGCAGGCCAAACAGACGCT
GGCGGACATTGAGGCCCGCCACCAGGACATCATGAAGCTGGAGACATCGA
TCAAGGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTGGAGTCG
CAGGGCGAGATGATCGATCGCATTGAGTACCATGTGGAGCACGCTATGGA
CTATGTGCAGACGGCAACTCAGGACACCAAGAAGGCGCTCAAGTACCAGA
GTAAAGCCCGACGAAAGAAGATCATGATACTGATCTGCCTCACTGTGCTG
GGCATCTTAGCGGCCTCATATGTTAGCAGTTATTTCATGGCAAGCTTTCT
AGACCAT
BO10346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RA | 876 | CG31136-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Syx1A-RB | 891 | CG31136-PB | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-RA | 2385 | CG31136-RA | 1321..2193 | 17..889 | 4365 | 100 | Plus |
Syx1A-RB | 2639 | CG31136-RB | 1321..2192 | 17..888 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24103571..24104443 | 889..17 | 4365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:48:34 has no hits.
BO10346.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:55 Download gff for
BO10346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:02 Download gff for
BO10346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1301..2180 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:31 Download gff for
BO10346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2193 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:55 Download gff for
BO10346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1301..2180 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:08 Download gff for
BO10346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx1A-RA | 1321..2193 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:08 Download gff for
BO10346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24103569..24104443 | 17..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:31 Download gff for
BO10346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19929291..19930165 | 17..891 | 99 | | Minus |
BO10346.pep Sequence
Translation from 16 to 907
> BO10346.pep
MTKDRLAALHAAQSDDEEETEVAVNVDGHDSYMDDFFAQVEEIRGMIDKV
QDNVEEVKKKHSAILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKGIE
QNIEQEEQQNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKG
RIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAKQTLADIEA
RHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTA
TQDTKKALKYQSKARRKKIMILICLTVLGILAASYVSSYFMASFLDH
BO10346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx1A-PA | 291 | CG31136-PA | 1..291 | 1..291 | 1462 | 100 | Plus |
Syx1A-PB | 296 | CG31136-PB | 1..291 | 1..291 | 1458 | 99.7 | Plus |
Syx4-PA | 333 | CG2715-PA | 65..322 | 14..278 | 267 | 23.4 | Plus |
Syx4-PB | 257 | CG2715-PB | 4..246 | 29..278 | 265 | 24 | Plus |
Syx7-PB | 282 | CG5081-PB | 22..267 | 35..283 | 161 | 23.1 | Plus |