Clone Sequence Records
BO10349.3prime Sequence
945 bp (868 high quality bases) assembled on 2006-04-19
> BO10349.3prime
ATGGTCTAGAAAGCTTGCCTGGCTAGCTGGCGGTGCTGTGGCATTATTAA
ACTGGAAAGTCGGATACCGAGGTGCGAAGGCTCCGTCGCCGATCATCTGC
GTATGCTCGGAGTCGTCCCTACCGGCGATCGTTGGTGCCCGGTACTGTGT
CTCCACAAACTGCGGTGGCGGTATATTAGGATACAGTGAACCACCACCAG
TACTGTCAGCCACGTTCCAGCCTAGAGCACCACCCACGCCATCGCCGCCA
GGAGGGCTCGCCGGGCTCACTGGCTGTGTGGGCGCCAGCGATGGATCCTC
GGACTGAACCGCCGACGGAGCATCCGTAAATTGAGTAGGTGGCCGTACGC
CAGCCAATGGAATAGTGCCCAAGGTGATTGGCACCTTGCCAGTGAGATTG
CGGTGCGGACCGCTCACCTCGCACTCCACATGCAGGTCGTAGTCCAAAGC
GATAATCCCGCAGTTGAGGAGGTTGGTCGGTGGCAGCGCCGGAATCTCCA
TTTGTTGCGTAAACGTGCGAGACTCGCCGCCATTGACTGGGCCAACACTT
AAGTTGGCTATGATCACCTTGGACTCGCGCTTCTCGCTCCGTGGCTGGTT
TGTGTGGAAGGTGACCAGCTTACGCAGTTCAAACTTCACTGCCGTAAGAT
TTACGTTGCTGGTGTTGTCCACCTCGCAGGTGATGGGCAGCACCTGCCCC
GAAACGAATCCTGTTTGCGGGATGTTCGTGATGACAGCCAGCGGTCCTGA
GCGACAGCAAAAACAGCAGAATGACTTTTCTAGCTCGAGCTTGAATGGCT
CCTTGACTCGAGGATTGAGATTTAGATCAACGGGCGCTATTACTGTGAAC
GCCATCTTCATGTCCTGATCGAATTTCACGGACGATCAAGCGTCACCTTG
ATGGTATAGCGCACATGGCCAAATTCGCCCTCAAAGGATGAGGGT
BO10349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-PA | 1269 | CG1105-RA | 408..1266 | 877..19 | 4295 | 100 | Minus |
CG1105-PA | 1269 | CG1105-RA | 339..407 | 945..877 | 345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1796 | CG1105-RA | 437..1364 | 945..19 | 4615 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7064878..7065653 | 171..945 | 3830 | 99.9 | Plus |
3R | 32079331 | 3R | 7064618..7064769 | 19..170 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:59:22 has no hits.
BO10349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:09 Download gff for
BO10349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 339..1269 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:08 Download gff for
BO10349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 339..1269 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:12:15 Download gff for
BO10349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 437..1364 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:24 Download gff for
BO10349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 437..1364 | 19..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:24 Download gff for
BO10349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7064618..7064769 | 19..170 | 100 | <- | Plus |
3R | 7064878..7065653 | 171..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:12:15 Download gff for
BO10349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2890340..2890491 | 19..170 | 100 | <- | Plus |
arm_3R | 2890600..2891375 | 171..945 | 99 | | Plus |
BO10349.5prime Sequence
890 bp (831 high quality bases) assembled on 2006-04-19
> BO10349.5prime
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTNCACTGCGGGATTATC
GCTTTGGACTACGACCTGCATGTGGAGTGCGAGGTGAGCG
BO10349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-PA | 1269 | CG1105-RA | 1..874 | 17..890 | 4326 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1796 | CG1105-RA | 97..972 | 15..890 | 4354 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7065118..7065720 | 890..288 | 2989 | 99.7 | Minus |
3R | 32079331 | 3R | 7066141..7066299 | 288..130 | 795 | 100 | Minus |
3R | 32079331 | 3R | 7066921..7067040 | 134..15 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:47:18 has no hits.
BO10349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:10 Download gff for
BO10349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:10 Download gff for
BO10349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:09 Download gff for
BO10349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 90..972 | 7..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:43 Download gff for
BO10349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 90..972 | 7..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:43 Download gff for
BO10349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7065118..7065720 | 288..890 | 99 | <- | Minus |
3R | 7066142..7066297 | 132..287 | 100 | <- | Minus |
3R | 7066924..7067047 | 7..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:09 Download gff for
BO10349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2892646..2892769 | 7..131 | 96 | | Minus |
arm_3R | 2890840..2891442 | 288..890 | 99 | <- | Minus |
arm_3R | 2891864..2892019 | 132..287 | 100 | <- | Minus |
BO10349.complete Sequence
1300 bp (1300 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631715
> BO10349.complete
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTCAACTGCGGGATTATC
GCTTTGGACTACGACCTGCATGTGGAGTGCGAGGTGAGCGGTCCGCACCG
CAATCTCACTGGCAAGGTGCCAATCACCTTGGGCACTATTCCATTGGCTG
GCGTACGGCCACCTACTCAATTTACGGATGCTCCGTCGGCGGTTCAGTCC
GAGGATCCATCGCTGGCGCCCACACAGCCAGTGAGCCCGGCGAGCCCTCC
TGGCGGCGATGGCGTGGGTGGTGCTCTAGGCTGGAACGTGGCTGACAGTA
CTGGTGGTGGTTCACTGTATCCTAATATACCGCCACCGCAGTTTGTGGAG
ACACAGTACCGGGCACCAACGATCGCCGGTAGGGACGACTCCGAGCATAC
GCAGATGATCGGCGACGGAGCCTTCGCACCTCGGTATCCGACTTTCCAGT
TTAATAATGCCACAGCACCGCCAGCTAGCCAGGCAAGCTTTCTAGACCAT
BO10349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1269 | CG1105-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-RA | 1796 | CG1105-RA | 97..1364 | 15..1282 | 6340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7064878..7065720 | 1130..288 | 4215 | 100 | Minus |
3R | 32079331 | 3R | 7066141..7066299 | 288..130 | 795 | 100 | Minus |
3R | 32079331 | 3R | 7064618..7064769 | 1282..1131 | 760 | 100 | Minus |
3R | 32079331 | 3R | 7066921..7067040 | 134..15 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:39:03 has no hits.
BO10349.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:08 Download gff for
BO10349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 1..1269 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:49 Download gff for
BO10349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 86..1360 | 7..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:33 Download gff for
BO10349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 99..1364 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:08 Download gff for
BO10349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 86..1360 | 7..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:40 Download gff for
BO10349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1105-RA | 99..1364 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:40 Download gff for
BO10349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7064615..7064769 | 1131..1284 | 98 | <- | Minus |
3R | 7066142..7066297 | 132..287 | 100 | <- | Minus |
3R | 7066924..7067038 | 17..131 | 100 | | Minus |
3R | 7064878..7065720 | 288..1130 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:33 Download gff for
BO10349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2890337..2890491 | 1131..1284 | 98 | <- | Minus |
arm_3R | 2890600..2891442 | 288..1130 | 100 | <- | Minus |
arm_3R | 2891864..2892019 | 132..287 | 100 | <- | Minus |
arm_3R | 2892646..2892760 | 17..131 | 100 | | Minus |
BO10349.pep Sequence
Translation from 16 to 1300
> BO10349.pep
MGLKGCELQLDNPWNTYYAGQTVNGQVKFTFDSPKKVRGIIIRFLGEANT
EWSEEKSVTTSEGKTENEVTQLKGHEEYFKIQYYLLGGKNSSETELPPGT
HTYPFTCALPPNLPSSFEGEFGHVRYTIKVTLDRPWKFDQDMKMAFTVIA
PVDLNLNPRVKEPFKLELEKSFCCFCCRSGPLAVITNIPQTGFVSGQVLP
ITCEVDNTSNVNLTAVKFELRKLVTFHTNQPRSEKRESKVIIANLSVGPV
NGGESRTFTQQMEIPALPPTNLLNCGIIALDYDLHVECEVSGPHRNLTGK
VPITLGTIPLAGVRPPTQFTDAPSAVQSEDPSLAPTQPVSPASPPGGDGV
GGALGWNVADSTGGGSLYPNIPPPQFVETQYRAPTIAGRDDSEHTQMIGD
GAFAPRYPTFQFNNATAPPASQASFLDH
BO10349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1105-PA | 422 | CG1105-PA | 1..422 | 1..422 | 2261 | 100 | Plus |
CG18745-PA | 433 | CG18745-PA | 5..404 | 6..419 | 610 | 34.5 | Plus |
CG18746-PA | 438 | CG18746-PA | 4..368 | 6..384 | 539 | 31.3 | Plus |
CG18748-PC | 409 | CG18748-PC | 11..402 | 11..424 | 526 | 31.3 | Plus |
CG18747-PB | 418 | CG18747-PB | 5..399 | 6..416 | 490 | 31.4 | Plus |