Clone BO10349 Report

Search the DGRC for BO10349

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG1105-RA
Protein status:BO10349.pep: validated full length
Sequenced Size:1300

Clone Sequence Records

BO10349.3prime Sequence

945 bp (868 high quality bases) assembled on 2006-04-19

> BO10349.3prime
ATGGTCTAGAAAGCTTGCCTGGCTAGCTGGCGGTGCTGTGGCATTATTAA
ACTGGAAAGTCGGATACCGAGGTGCGAAGGCTCCGTCGCCGATCATCTGC
GTATGCTCGGAGTCGTCCCTACCGGCGATCGTTGGTGCCCGGTACTGTGT
CTCCACAAACTGCGGTGGCGGTATATTAGGATACAGTGAACCACCACCAG
TACTGTCAGCCACGTTCCAGCCTAGAGCACCACCCACGCCATCGCCGCCA
GGAGGGCTCGCCGGGCTCACTGGCTGTGTGGGCGCCAGCGATGGATCCTC
GGACTGAACCGCCGACGGAGCATCCGTAAATTGAGTAGGTGGCCGTACGC
CAGCCAATGGAATAGTGCCCAAGGTGATTGGCACCTTGCCAGTGAGATTG
CGGTGCGGACCGCTCACCTCGCACTCCACATGCAGGTCGTAGTCCAAAGC
GATAATCCCGCAGTTGAGGAGGTTGGTCGGTGGCAGCGCCGGAATCTCCA
TTTGTTGCGTAAACGTGCGAGACTCGCCGCCATTGACTGGGCCAACACTT
AAGTTGGCTATGATCACCTTGGACTCGCGCTTCTCGCTCCGTGGCTGGTT
TGTGTGGAAGGTGACCAGCTTACGCAGTTCAAACTTCACTGCCGTAAGAT
TTACGTTGCTGGTGTTGTCCACCTCGCAGGTGATGGGCAGCACCTGCCCC
GAAACGAATCCTGTTTGCGGGATGTTCGTGATGACAGCCAGCGGTCCTGA
GCGACAGCAAAAACAGCAGAATGACTTTTCTAGCTCGAGCTTGAATGGCT
CCTTGACTCGAGGATTGAGATTTAGATCAACGGGCGCTATTACTGTGAAC
GCCATCTTCATGTCCTGATCGAATTTCACGGACGATCAAGCGTCACCTTG
ATGGTATAGCGCACATGGCCAAATTCGCCCTCAAAGGATGAGGGT

BO10349.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 1269 CG1105-RA 408..1266 877..19 4295 100 Minus
CG1105-PA 1269 CG1105-RA 339..407 945..877 345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1796 CG1105-RA 437..1364 945..19 4615 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7064878..7065653 171..945 3830 99.9 Plus
3R 32079331 3R 7064618..7064769 19..170 760 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:59:22 has no hits.

BO10349.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:09 Download gff for BO10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 339..1269 16..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:08 Download gff for BO10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 339..1269 16..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:12:15 Download gff for BO10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 437..1364 19..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:24 Download gff for BO10349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 437..1364 19..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:24 Download gff for BO10349.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7064618..7064769 19..170 100 <- Plus
3R 7064878..7065653 171..945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:12:15 Download gff for BO10349.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2890340..2890491 19..170 100 <- Plus
arm_3R 2890600..2891375 171..945 99   Plus

BO10349.5prime Sequence

890 bp (831 high quality bases) assembled on 2006-04-19

> BO10349.5prime
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTNCACTGCGGGATTATC
GCTTTGGACTACGACCTGCATGTGGAGTGCGAGGTGAGCG

BO10349.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 1269 CG1105-RA 1..874 17..890 4326 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1796 CG1105-RA 97..972 15..890 4354 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7065118..7065720 890..288 2989 99.7 Minus
3R 32079331 3R 7066141..7066299 288..130 795 100 Minus
3R 32079331 3R 7066921..7067040 134..15 600 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:47:18 has no hits.

BO10349.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:10 Download gff for BO10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:10 Download gff for BO10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:09 Download gff for BO10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 90..972 7..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:43 Download gff for BO10349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 90..972 7..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:43 Download gff for BO10349.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7065118..7065720 288..890 99 <- Minus
3R 7066142..7066297 132..287 100 <- Minus
3R 7066924..7067047 7..131 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:09 Download gff for BO10349.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2892646..2892769 7..131 96   Minus
arm_3R 2890840..2891442 288..890 99 <- Minus
arm_3R 2891864..2892019 132..287 100 <- Minus

BO10349.complete Sequence

1300 bp (1300 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631715

> BO10349.complete
GAAGTTATCAGTCGACATGGGCCTTAAAGGTTGTGAATTGCAATTGGACA
ACCCGTGGAACACCTACTACGCCGGTCAGACGGTCAACGGCCAGGTGAAG
TTTACGTTCGACTCGCCCAAAAAAGTCCGAGGTATTATCATTCGGTTCCT
GGGAGAAGCCAACACCGAGTGGTCAGAGGAGAAGAGCGTAACCACCAGCG
AGGGCAAGACCGAGAACGAGGTCACCCAACTGAAGGGGCATGAGGAGTAC
TTTAAGATCCAGTACTATCTGCTGGGCGGCAAAAACAGCTCTGAGACGGA
ACTACCGCCTGGCACTCACACTTATCCATTCACCTGTGCTCTGCCGCCTA
ATCTACCCTCATCCTTTGAGGGCGAATTTGGCCATGTGCGCTATACCATC
AAGGTGACGCTTGATCGTCCGTGGAAATTCGATCAGGACATGAAGATGGC
GTTCACAGTAATAGCGCCCGTTGATCTAAATCTCAATCCTCGAGTCAAGG
AGCCATTCAAGCTCGAGCTAGAAAAGTCATTCTGCTGTTTTTGCTGTCGC
TCAGGACCGCTGGCTGTCATCACGAACATCCCGCAAACAGGATTCGTTTC
GGGGCAGGTGCTGCCCATCACCTGCGAGGTGGACAACACCAGCAACGTAA
ATCTTACGGCAGTGAAGTTTGAACTGCGTAAGCTGGTCACCTTCCACACA
AACCAGCCACGGAGCGAGAAGCGCGAGTCCAAGGTGATCATAGCCAACTT
AAGTGTTGGCCCAGTCAATGGCGGCGAGTCTCGCACGTTTACGCAACAAA
TGGAGATTCCGGCGCTGCCACCGACCAACCTCCTCAACTGCGGGATTATC
GCTTTGGACTACGACCTGCATGTGGAGTGCGAGGTGAGCGGTCCGCACCG
CAATCTCACTGGCAAGGTGCCAATCACCTTGGGCACTATTCCATTGGCTG
GCGTACGGCCACCTACTCAATTTACGGATGCTCCGTCGGCGGTTCAGTCC
GAGGATCCATCGCTGGCGCCCACACAGCCAGTGAGCCCGGCGAGCCCTCC
TGGCGGCGATGGCGTGGGTGGTGCTCTAGGCTGGAACGTGGCTGACAGTA
CTGGTGGTGGTTCACTGTATCCTAATATACCGCCACCGCAGTTTGTGGAG
ACACAGTACCGGGCACCAACGATCGCCGGTAGGGACGACTCCGAGCATAC
GCAGATGATCGGCGACGGAGCCTTCGCACCTCGGTATCCGACTTTCCAGT
TTAATAATGCCACAGCACCGCCAGCTAGCCAGGCAAGCTTTCTAGACCAT

BO10349.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1269 CG1105-PA 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-RA 1796 CG1105-RA 97..1364 15..1282 6340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7064878..7065720 1130..288 4215 100 Minus
3R 32079331 3R 7066141..7066299 288..130 795 100 Minus
3R 32079331 3R 7064618..7064769 1282..1131 760 100 Minus
3R 32079331 3R 7066921..7067040 134..15 600 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:39:03 has no hits.

BO10349.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:08 Download gff for BO10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 1..1269 17..1285 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:49 Download gff for BO10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 86..1360 7..1282 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:33 Download gff for BO10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 99..1364 17..1284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:08 Download gff for BO10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 86..1360 7..1282 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:40 Download gff for BO10349.complete
Subject Subject Range Query Range Percent Splice Strand
CG1105-RA 99..1364 17..1284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:40 Download gff for BO10349.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7064615..7064769 1131..1284 98 <- Minus
3R 7066142..7066297 132..287 100 <- Minus
3R 7066924..7067038 17..131 100   Minus
3R 7064878..7065720 288..1130 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:33 Download gff for BO10349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2890337..2890491 1131..1284 98 <- Minus
arm_3R 2890600..2891442 288..1130 100 <- Minus
arm_3R 2891864..2892019 132..287 100 <- Minus
arm_3R 2892646..2892760 17..131 100   Minus

BO10349.pep Sequence

Translation from 16 to 1300

> BO10349.pep
MGLKGCELQLDNPWNTYYAGQTVNGQVKFTFDSPKKVRGIIIRFLGEANT
EWSEEKSVTTSEGKTENEVTQLKGHEEYFKIQYYLLGGKNSSETELPPGT
HTYPFTCALPPNLPSSFEGEFGHVRYTIKVTLDRPWKFDQDMKMAFTVIA
PVDLNLNPRVKEPFKLELEKSFCCFCCRSGPLAVITNIPQTGFVSGQVLP
ITCEVDNTSNVNLTAVKFELRKLVTFHTNQPRSEKRESKVIIANLSVGPV
NGGESRTFTQQMEIPALPPTNLLNCGIIALDYDLHVECEVSGPHRNLTGK
VPITLGTIPLAGVRPPTQFTDAPSAVQSEDPSLAPTQPVSPASPPGGDGV
GGALGWNVADSTGGGSLYPNIPPPQFVETQYRAPTIAGRDDSEHTQMIGD
GAFAPRYPTFQFNNATAPPASQASFLDH

BO10349.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1105-PA 422 CG1105-PA 1..422 1..422 2261 100 Plus
CG18745-PA 433 CG18745-PA 5..404 6..419 610 34.5 Plus
CG18746-PA 438 CG18746-PA 4..368 6..384 539 31.3 Plus
CG18748-PC 409 CG18748-PC 11..402 11..424 526 31.3 Plus
CG18747-PB 418 CG18747-PB 5..399 6..416 490 31.4 Plus