Clone Sequence Records
BO10350.3prime Sequence
938 bp (892 high quality bases) assembled on 2006-04-19
> BO10350.3prime
ATGGTCTAGAAAGCTTGCGACGGCGGCACGCTTGGCCGGCGAGCACAGGG
CCTCAGCCTCCGAGCTGGGATCCTCCGGCTTCTTGCGCTTGATCAAATGT
GTGATGTCTGTGGGCTTGGCCGAACTGCTGCTAATGGTCGATGAGGAGGC
CGCCGCAGCACCTTTGGAGGAGGACGACGAAGAGCTGGCGGCTCCATTGG
CTGACGACGACGACGAGGAGGAGGCAGCAGCTGCATCACCACTGCTCATT
GGCTTGATGTAGCTATCCAGGGCAGCTCGCACTTCAGCAATGGTCTGGGC
CTGCATCTCTTCGATTTCCTGGATCTTGGCCAAAATCTCCTGCTTAGTTT
CCTCCAAATCCAACATATTGTTTCTGTCGCGCTCGCTAGGTTCGTCCTTG
CCCTTAATCTCGGCGATTTCCTCCTCGATCAACACGCTTGATTGACGCAG
TGCTGTCGCTCCTTCCTTGTTGAGTTGCTGCATCAAATAGGTCAGCCCGA
TCTTGTAATGCAACTCGGCCAAAGCACGTCGGTTTCTTGTGGGCAGCTCT
CCGTGGATCTTCAGTGCTTTCTCATAATCTTCGCGTGCCGCCTCTAGTAT
TCCATTCTCAAACTCAATGTTAGCCAGCTCAGTCTGAACCTCAGCCAAGT
AGGGGAGTCCACTGAGCCCTTGGCGCGAGAAGATCTGAGCAGCCGCCTCT
AGAATTTCCCAGGCCAACTGCAAACTTCCGCTAACTCCTTCCTCTTCTTC
GGGTTCTTCCTCTACAGCAGGTGCTGCACCATTGGAACAACTAGCTGTGA
CCTCACCATTCGATGTGCTCGGTCGCTCGTCATCGTTGACGGCAGCTCCG
CCACCGCCATTGCTGCTGCTGACCTCATCCACGCCGGTCGGTACCTTCTT
AGAGGGCTTTTCATCACTTTGAGCTTGCTCGGCTTCCC
BO10350.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-PA | 1479 | CG8223-RA | 557..1476 | 938..19 | 4600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 2253 | CG8223-RB | 1026..1945 | 938..19 | 4600 | 100 | Minus |
CG8223-RA | 1999 | CG8223-RA | 772..1691 | 938..19 | 4600 | 100 | Minus |
CG34135-RC | 7398 | CG34135-RC | 3552..3917 | 573..938 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8752753..8753118 | 938..573 | 1830 | 100 | Minus |
3R | 32079331 | 3R | 8753180..8753458 | 573..295 | 1395 | 100 | Minus |
3R | 32079331 | 3R | 8753519..8753796 | 296..19 | 1390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:55:40 has no hits.
BO10350.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:11 Download gff for
BO10350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 557..1479 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:11 Download gff for
BO10350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 557..1479 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:12:17 Download gff for
BO10350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 772..1691 | 19..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:47 Download gff for
BO10350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 772..1691 | 19..938 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:47 Download gff for
BO10350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8752753..8753118 | 573..938 | 100 | -> | Minus |
3R | 8753181..8753458 | 295..572 | 100 | -> | Minus |
3R | 8753521..8753796 | 19..294 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:12:17 Download gff for
BO10350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4578475..4578840 | 573..938 | 100 | -> | Minus |
arm_3R | 4578903..4579180 | 295..572 | 100 | -> | Minus |
arm_3R | 4579243..4579518 | 19..294 | 100 | | Minus |
BO10350.5prime Sequence
926 bp (764 high quality bases) assembled on 2006-04-19
> BO10350.5prime
GAAGTTATCAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GGGAAATTCTAGAGGNCGCTGCTCAGATCTTCTCGCGCCCAGGGCTCAGT
GGACTCCCCTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTT
TGAGAATGGAATACTAGAGGCGGCAC
BO10350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-PA | 1479 | CG8223-RA | 1..910 | 17..926 | 4481 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 2253 | CG8223-RB | 470..1379 | 17..926 | 4509 | 99.7 | Plus |
CG8223-RA | 1999 | CG8223-RA | 216..1125 | 17..926 | 4509 | 99.7 | Plus |
CG34135-RC | 7398 | CG34135-RC | 3564..4156 | 926..334 | 2924 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8752514..8753106 | 334..926 | 2924 | 99.5 | Plus |
3R | 32079331 | 3R | 8752082..8752398 | 17..333 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:20:05 has no hits.
BO10350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:12 Download gff for
BO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:13 Download gff for
BO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:10:54 Download gff for
BO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 203..1125 | 5..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:58:00 Download gff for
BO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 203..1125 | 5..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:58:00 Download gff for
BO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8752069..8752398 | 5..333 | 98 | -> | Plus |
3R | 8752514..8753106 | 334..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:10:54 Download gff for
BO10350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4577791..4578120 | 5..333 | 98 | -> | Plus |
arm_3R | 4578236..4578828 | 334..926 | 99 | | Plus |
BO10350.complete Sequence
1510 bp assembled on 2007-10-17
GenBank Submission: FJ631716
> BO10350.complete
GAAGTTATCAGTCGACATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GGGAAATTCTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGT
GGACTCCCCTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTT
TGAGAATGGAATACTAGAGGCGGCACGCGAAGATTATGAGAAAGCACTGA
AGATCCACGGAGAGCTGCCCACAAGAAACCGACGTGCTTTGGCCGAGTTG
CATTACAAGATCGGGCTGACCTATTTGATGCAGCAACTCAACAAGGAAGG
AGCGACAGCACTGCGTCAATCAAGCGTGTTGATCGAGGAGGAAATCGCCG
AGATTAAGGGCAAGGACGAACCTAGCGAGCGCGACAGAAACAATATGTTG
GATTTGGAGGAAACTAAGCAGGAGATTTTGGCCAAGATCCAGGAAATCGA
AGAGATGCAGGCCCAGACCATTGCTGAAGTGCGAGCTGCCCTGGATAGCT
ACATCAAGCCAATGAGCAGTGGTGATGCAGCTGCTGCCTCCTCCTCGTCG
TCGTCGTCAGCCAATGGAGCCGCCAGCTCTTCGTCGTCCTCCTCCAAAGG
TGCTGCGGCGGCCTCCTCATCGACCATTAGCAGCAGTTCGGCCAAGCCCA
CAGACATCACACATTTGATCAAGCGCAAGAAGCCGGAGGATCCCAGCTCG
GAGGCTGAGGCCCTGTGCTCGCCGGCCAAGCGTGCCGCCGTCGCAAGCTT
TCTAGACCAT
BO10350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 1479 | CG8223-PB | 1..1476 | 17..1492 | 7380 | 100 | Plus |
CG8223-RA | 1479 | CG8223-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-RB | 2253 | CG8223-RB | 470..1945 | 17..1492 | 7380 | 100 | Plus |
CG8223-RA | 1999 | CG8223-RA | 216..1691 | 17..1492 | 7380 | 100 | Plus |
CG34135-RC | 7398 | CG34135-RC | 3552..4156 | 938..334 | 3025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8752514..8753118 | 334..938 | 3025 | 100 | Plus |
3R | 32079331 | 3R | 8752082..8752398 | 17..333 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 8753180..8753458 | 938..1216 | 1395 | 100 | Plus |
3R | 32079331 | 3R | 8753519..8753796 | 1215..1492 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:49:42 has no hits.
BO10350.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:02 Download gff for
BO10350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 1..1479 | 17..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:27 Download gff for
BO10350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 195..1683 | 5..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:56 Download gff for
BO10350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 216..1691 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:52 Download gff for
BO10350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 208..1683 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:10 Download gff for
BO10350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8223-RA | 216..1691 | 17..1494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:10 Download gff for
BO10350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8753181..8753458 | 939..1216 | 100 | -> | Plus |
3R | 8753521..8753796 | 1217..1494 | 99 | | Plus |
3R | 8752082..8752398 | 17..333 | 100 | -> | Plus |
3R | 8752514..8753118 | 334..938 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:56 Download gff for
BO10350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4577804..4578120 | 17..333 | 100 | -> | Plus |
arm_3R | 4578236..4578840 | 334..938 | 100 | -> | Plus |
arm_3R | 4578903..4579180 | 939..1216 | 100 | -> | Plus |
arm_3R | 4579243..4579518 | 1217..1494 | 99 | | Plus |
BO10350.pep Sequence
Translation from 16 to 1510
> BO10350.pep
MSAEAEAIVTTATADVSSPSKTVAVEPVAADTTPDNAPAVSTEGSGKAEQ
ERAEKILKGKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVYGELADEL
GQPLLLYAKALIAMALDENKVIDVPDEAADDDDEDVDDDEEESAEDGAAK
KEEKKDTKEAANGASSSNGKELDTIKEGSDEADSTGEAEQAQSDEKPSKK
VPTGVDEVSSSNGGGGAAVNDDERPSTSNGEVTASCSNGAAPAVEEEPEE
EEGVSGSLQLAWEILEAAAQIFSRQGLSGLPYLAEVQTELANIEFENGIL
EAAREDYEKALKIHGELPTRNRRALAELHYKIGLTYLMQQLNKEGATALR
QSSVLIEEEIAEIKGKDEPSERDRNNMLDLEETKQEILAKIQEIEEMQAQ
TIAEVRAALDSYIKPMSSGDAAAASSSSSSSANGAASSSSSSSKGAAAAS
SSTISSSSAKPTDITHLIKRKKPEDPSSEAEALCSPAKRAAVASFLDH
BO10350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8223-PB | 492 | CG8223-PB | 1..492 | 1..492 | 2415 | 100 | Plus |
CG8223-PA | 492 | CG8223-PA | 1..492 | 1..492 | 2415 | 100 | Plus |
tn-PC | 1517 | CG15105-PC | 490..817 | 140..473 | 166 | 23.9 | Plus |