Clone Sequence Records
BO10352.3prime Sequence
904 bp (800 high quality bases) assembled on 2006-04-19
> BO10352.3prime
ATGGTCTAGAAAGCTTGCGTTCTCGTTCTGCAGTTTCACCATCTTTTCGC
GTACGTTCTTTAGCAGATCCTTCATTTGTTCGTACTTTCCCGTGGAGTCG
GGCAGGTTTTCAAAGTTGATCACATCGCTGACGCCCACCTTAAAGTTGCT
GCCCACAGGCAGTCTGTCGTAAACGGAGAATTTCAGCAAAGGCGTGCCCT
CATAAGACGCCTTAAAGGGAGTCGAGGGTGCTGATCGGGACTGCTCATTA
TTTCCGGACTCGGCAGCAGATGGACCAACCTCCGTCTCAGACGTGTCATC
CAGGTCGGTTGGTGATTTCGATTCATTCGCTGTCGTGTTATGCGACGCAT
TAACATCCAGCTCTTGGAGGAGCTCCTCCTGCTGGGCCTTCAAATCTTCC
AGGCTTGGAGATGGCGAGCGCGCTGTCAGTTCGCCATCTTCGCACTCTTC
GGGCGGAGGTGGTTGCGGCGGGGGCACTGATGGTGGCAGTGGAGGGTCCT
CTGTTTCCTCTTCTAGTTCCATGTCGTAGTCATCGAAGCTGGTCAGCAAC
TCGCTGGGAGCGGGAACACGGTCGTGTGGAGCAGGCAAATCCACTAGCTT
CTTGCGCTTGTAACCGTTGATCACGTTTTCGCCCAACGATTTAATGAAGT
TCTCCTTGGACTGGCTCTCTTGGAATGGCGGTACATTGTGGTGCTTAAAA
TCGTCGAAACAATTGGCCTTAGGCTGGACGTTGAAGCCGGGATACTCCAC
TATTTTGTTGACGTCGTATTTAAAGGTTTCGGACTCTCCCTCTTCCTCGT
CGGATTTTGTAACCTCCGAGCCATCTGCATTAAACAGAGCTATGCCCGAG
CTCTGCACCCTTTGCTCCTCCAGCCAAGCAGGCGGATAGCCCAGCACTCG
CATG
BO10352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-PA | 1662 | CG4622-RA | 774..1659 | 904..19 | 4355 | 99.6 | Minus |
| CG4622-PB | 1482 | CG4622-RB | 774..1472 | 904..206 | 3420 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-RC | 2762 | CG4622-RC | 1747..2632 | 904..19 | 4385 | 99.8 | Minus |
| CG4622-RA | 1892 | CG4622-RA | 877..1762 | 904..19 | 4385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24533504..24534187 | 19..702 | 3420 | 100 | Plus |
| 2R | 25286936 | 2R | 24534243..24534363 | 702..822 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 24534414..24534496 | 822..904 | 370 | 96.4 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:13:21 has no hits.
BO10352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:15 Download gff for
BO10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-PA | 774..1662 | 16..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:17 Download gff for
BO10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-PA | 774..1662 | 16..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:34:26 Download gff for
BO10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 877..1762 | 19..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:13 Download gff for
BO10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 877..1762 | 19..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:13 Download gff for
BO10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24533504..24534187 | 19..702 | 100 | <- | Plus |
| 2R | 24534244..24534363 | 703..822 | 100 | <- | Plus |
| 2R | 24534415..24534496 | 823..904 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:34:26 Download gff for
BO10352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20421767..20421886 | 703..822 | 100 | <- | Plus |
| arm_2R | 20421938..20422019 | 823..904 | 97 | | Plus |
| arm_2R | 20421027..20421710 | 19..702 | 100 | <- | Plus |
BO10352.5prime Sequence
876 bp (864 high quality bases) assembled on 2006-04-19
> BO10352.5prime
GAAGTTATCAGTCGACATGGACAACAGCGTTATACTGATAGACGATTCAC
AAAACAGCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAA
GACGATGTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGA
ACCTCCAACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGG
ACACCACCGAGGAAGATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAAC
AAGGAAGCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGA
AGGCGCTTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAAC
TAATGATATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCC
CAAGACCTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGC
AAACGTTCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGA
CGGAAGAACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGA
CCCAAGGCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCT
ACGCGACTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCA
AAAAGATGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGG
TTCGGTCACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCAT
GGGCTACAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGC
TGGGCTATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGC
ATAGCTCTGTTTAATGCAGATGGCTC
BO10352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-PA | 1662 | CG4622-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
| CG4622-PB | 1482 | CG4622-RB | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-RC | 2762 | CG4622-RC | 974..1833 | 17..876 | 4300 | 100 | Plus |
| CG4622-RA | 1892 | CG4622-RA | 104..963 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24534414..24535092 | 872..194 | 3380 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24535141..24535324 | 200..17 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:47:42 has no hits.
BO10352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:16 Download gff for
BO10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-PB | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:19 Download gff for
BO10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-PB | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:09 Download gff for
BO10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 99..963 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:41 Download gff for
BO10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 99..963 | 9..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:41 Download gff for
BO10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24534412..24535086 | 200..876 | 99 | <- | Minus |
| 2R | 24535142..24535329 | 9..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:09 Download gff for
BO10352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20422665..20422852 | 9..199 | 97 | | Minus |
| arm_2R | 20421935..20422609 | 200..876 | 99 | <- | Minus |
BO10352.complete Sequence
1693 bp (1693 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631717
> BO10352.complete
GAAGTTATCAGTCGACATGGACAACAGCGTTATACTGATAGACGATTCAC
AAAACAGCGTGGTGATTGTGGATGACGACGTGGAAGATGGGGAGCTGGAA
GACGATGTGGTGTTCGTCTGTCCCGAAGAATTGACCAGAAAAGAGATCGA
ACCTCCAACCGACAAAATTGAGGAAAAACACTCAAATACATCGATTCAGG
ACACCACCGAGGAAGATGGGGATAGCCTGGTCTTCGAAGTTCGATTTAAC
AAGGAAGCGCACTTCACCAGTCTGCAGCAGCAAGTGCTCGTCGCCTTGGA
AGGCGCTTTTGCAGACAAGCAAATTGTGTTCCGGGACAACCCACAGGAAC
TAATGATATCAGCCTTCGAAAGAAGTAGGACCTTGCCAGAGGAGGAGCCC
CAAGACCTCTTCCTGATCGACACTCAGCCAGCGGCCAAGCTGAATGCCGC
AAACGTTCCCTCCTACAAGCGCTGCAATGCCGACATCCTGGACGAGCAGA
CGGAAGAACGGAAAAAACTGAAGGCAGAGGCGGTCAACAAGTGCTTTCGA
CCCAAGGCGCAGTCGTCGTGCTTCAATTGCGGCGACACAGAGCACTCCCT
ACGCGACTGTACCAAGCCAAGAAACAATTCAAGGATAACGCGCGCTCGCA
AAAAGATGACCAGCCGCACAGAGCGCTATCACGTCGATACAGAGCAGCGG
TTCGGTCACATACGCCCCGGCAAGATCAGCACTAAGACGCGCCATGCCAT
GGGCTACAGTCGCGGCCAGTTGCCCTTCATTTTCTACCGCATGCGAGTGC
TGGGCTATCCGCCTGCTTGGCTGGAGGAGGCAAAGGTGCAGAGCTCGGGC
ATAGCTCTGTTTAATGCAGATGGCTCGGAGGTTACAAAATCCGACGAGGA
AGAGGGAGAGTCCGAAACCTTTAAATACGACGTCAACAAAATAGTGGAGT
ATCCCGGCTTCAACGTCCAGCCTAAGGCCAATTGTTTCGACGATTTTAAG
CACCACAATGTACCGCCATTCCAAGAGAGCCAGTCCAAGGAGAACTTCAT
TAAATCGTTGGGCGAAAACGTGATCAACGGTTACAAGCGCAAGAAGCTAG
TGGATTTGCCTGCTCCACACGACCGTGTTCCCGCTCCCAGCGAGTTGCTG
ACCAGCTTCGATGACTACGACATGGAACTAGAAGAGGAAACAGAGGACCC
TCCACTGCCACCATCAGTGCCCCCGCCGCAACCACCTCCGCCCGAAGAGT
GCGAAGATGGCGAACTGACAGCGCGCTCGCCATCTCCAAGCCTGGAAGAT
TTGAAGGCCCAGCAGGAGGAGCTCCTCCAAGAGCTGGATGTTAATGCGTC
GCATAACACGACAGCGAATGAATCGAAATCACCAACCGACCTGGATGACA
CGTCTGAGACGGAGGTTGGTCCATCTGCTGCCGAGTCCGGAAATAATGAG
CAGTCCCGATCAGCACCCTCGACTCCCTTTAAGGCGTCTTATGAGGGCAC
GCCTTTGCTGAAATTCTCCGTTTACGACAGACTGCCTGTGGGCAGCAACT
TTAAGGTGGGCGTCAGCGATGTGATCAACTTTGAAAACCTGCCCGACTCC
ACGGGAAAGTACGAACAAATGAAGGATCTGCTAAAGAACGTACGCGAAAA
GATGGTGAAACTGCAGAACGAGAACGCAAGCTTTCTAGACCAT
BO10352.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-RC | 1662 | CG4622-PC | 1..1659 | 17..1675 | 8295 | 100 | Plus |
| CG4622-RA | 1662 | CG4622-PA | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-RC | 2762 | CG4622-RC | 974..2632 | 17..1675 | 8295 | 100 | Plus |
| CG4622-RA | 1892 | CG4622-RA | 104..1762 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24533504..24534187 | 1675..992 | 3420 | 100 | Minus |
| 2R | 25286936 | 2R | 24534414..24535092 | 872..194 | 3380 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24535141..24535324 | 200..17 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 24534243..24534363 | 992..872 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:45:46 has no hits.
BO10352.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:00 Download gff for
BO10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 1..1662 | 17..1678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:30 Download gff for
BO10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 94..1757 | 9..1675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:19 Download gff for
BO10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 104..1762 | 17..1677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:00 Download gff for
BO10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 94..1757 | 9..1675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:17 Download gff for
BO10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 104..1762 | 17..1677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:17 Download gff for
BO10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24533500..24534187 | 992..1677 | 99 | <- | Minus |
| 2R | 24534244..24534363 | 872..991 | 100 | <- | Minus |
| 2R | 24534415..24535086 | 200..871 | 100 | <- | Minus |
| 2R | 24535142..24535324 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:19 Download gff for
BO10352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20421023..20421710 | 992..1677 | 99 | <- | Minus |
| arm_2R | 20421767..20421886 | 872..991 | 100 | <- | Minus |
| arm_2R | 20421938..20422609 | 200..871 | 100 | <- | Minus |
| arm_2R | 20422665..20422847 | 17..199 | 100 | | Minus |
BO10352.pep Sequence
Translation from 16 to 1693
> BO10352.pep
MDNSVILIDDSQNSVVIVDDDVEDGELEDDVVFVCPEELTRKEIEPPTDK
IEEKHSNTSIQDTTEEDGDSLVFEVRFNKEAHFTSLQQQVLVALEGAFAD
KQIVFRDNPQELMISAFERSRTLPEEEPQDLFLIDTQPAAKLNAANVPSY
KRCNADILDEQTEERKKLKAEAVNKCFRPKAQSSCFNCGDTEHSLRDCTK
PRNNSRITRARKKMTSRTERYHVDTEQRFGHIRPGKISTKTRHAMGYSRG
QLPFIFYRMRVLGYPPAWLEEAKVQSSGIALFNADGSEVTKSDEEEGESE
TFKYDVNKIVEYPGFNVQPKANCFDDFKHHNVPPFQESQSKENFIKSLGE
NVINGYKRKKLVDLPAPHDRVPAPSELLTSFDDYDMELEEETEDPPLPPS
VPPPQPPPPEECEDGELTARSPSPSLEDLKAQQEELLQELDVNASHNTTA
NESKSPTDLDDTSETEVGPSAAESGNNEQSRSAPSTPFKASYEGTPLLKF
SVYDRLPVGSNFKVGVSDVINFENLPDSTGKYEQMKDLLKNVREKMVKLQ
NENASFLDH
BO10352.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-PC | 553 | CG4622-PC | 1..553 | 1..553 | 2892 | 100 | Plus |
| CG4622-PA | 553 | CG4622-PA | 1..553 | 1..553 | 2892 | 100 | Plus |
