Clone Sequence Records
BO10356.3prime Sequence
927 bp (828 high quality bases) assembled on 2006-04-19
> BO10356.3prime
ATGGTCTAGAAAGCTTGCGTTGTAGCCGAGTACAGCCTTTAGGTAATCGG
CAATTCCTTTGCTCTCCACCCGCTCCTCCAGCTGCTTAACTGAACGCTCC
AGTTTTCCCTCTTTATCCAATTCTCTGGCATAGTAGAACAAGTTAAGAAC
ACGCTTTTGGTTTTCGAACTTCTCTTGGCCTTCGATATCGCCCGTGATCT
GCAGCTTATCCAAGTGACTGACTATCTCAGGAGCAGAACGGACTAGAGCG
GCCATGAAGACTCCATTCAGTTGGCGGCAGAGCGTGGCCATGGCTCGCAA
TGTACTCTCACCCACTGTTGGCTTCAGCAGCAGTTGCGGCAGATAGCTGA
GAAACGGAGTGAATCTCTGTTCGCCGCCAAAGTGCGTGTACAAATCGGAA
CGCTCCACAATCTCGCAGAGAAGGTTCAGCACTCGAGTGGCAACGCCTTC
GCGTGTGGTAAATCGTTGGCTCACATATGCATCAATGGATGCGCTCAGCA
GGCTGGTCAACGGCTCCGTCACGATTTTCATCAGCGATGTGGCGTTTTCG
AAGAGCAGCGCACGCAGTGAAGCCACCAGTGAGAGCTGCTGCTCCGGCGA
AAGCGAATTAAGGCGTTTCAAAGTCTCGTGCATGTACTCAATTAAATGCG
CAAACATTTGAGTCTGTCTCTCGACGGGAGTCGGAAAGAACTTACAGGCC
AGCTGGACAATACCCAGGTTTTGTGGCATACAAAGTTCTCCGCCATCTAC
GGCTCCCTTGTCCTTGGATGAATTCTTGGTTGCCAGCGGTATCTGTTGAT
AGGGAAAACGACTGCCGTCCTTGTCCAAAAAGTTGAGCAGGAACTTCTGG
GCATAGTTTTTCCTCAGCCAATCGCTTAGCTCCGTGGTATTGTGCTCCGC
CTCATGCTGCTCAATTAGATTCAGAGC
BO10356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-PA | 1914 | CG1575-RA | 1008..1911 | 922..19 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 2053 | CG1575-RB | 1048..1957 | 927..19 | 4525 | 99.9 | Minus |
| CG1575-RA | 2119 | CG1575-RA | 1114..2023 | 927..19 | 4525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8118131..8119034 | 922..19 | 4520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:19:15 has no hits.
BO10356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:24 Download gff for
BO10356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1002..1914 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:28 Download gff for
BO10356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1002..1914 | 18..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:24 Download gff for
BO10356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 1114..2023 | 19..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:24 Download gff for
BO10356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 1114..2023 | 19..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:24 Download gff for
BO10356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8118125..8119034 | 19..927 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:24 Download gff for
BO10356.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8012158..8013067 | 19..927 | 99 | | Minus |
BO10356.5prime Sequence
938 bp (854 high quality bases) assembled on 2006-04-19
> BO10356.5prime
GAAGTTATCAGTCGACATGGGCGGCCACCACAAGAAGAACCTGCGTGCGG
AGAAGGCCAAAGTGAAGCTGAAGGGCGCCAAGCTGCCCAAGGGCCTGAAC
GTGACCAAGACGGACTTCAAGGTGCGCAAAATTGAGATTCGGGAGCAGCT
GAAGGAGTCCTCCTACTCGGAAACGGGCCAGCGACAGTTCAATCTCAAGG
AGACACTGTCCCGTCTGAAGCATCATAGTGTCAAGTTCCGCACTGATGCA
CAGCGCAATGTGCGCGACTCCCTGAAGTCCGGCAATGCGGACCATTTAAT
TGGTCATCTGAACGAGCTGTTCCAAGGAATTGCGGCCGGAGCTTTGGACA
TGGAGGGGTCGGCGCGAAAGGAATCATTCAAGACCCTTGATGTTCTGCTA
GAGGCACTGCAGCCACAAGCAGTGGCGCCCTTCTTCCATGTCATAGCCAC
CTATTTGCGTTGCGCCATGACTCACGTGCTGCCCGCCATCCAGGAGGACT
CGCTGCTCATGCTCGACGTCCTACTGTTGCGCGTACCACCGGCTTTCTTG
GCCGAGCGGAGTGCCAGCACCATAATTGGCAACTTCATCGACATGATCTC
CCGCGCCCGCCACGACAACGAGCGTTCGAATCGAACGTTGACATTGAACC
TGAGTCAGGGCAAGCAGACGACTGTGAAGTGGCGCACCAAGGTGCTTATC
CGTCTGCAGCAGATCCTCAGCACGCTAGTCACCTCGAAGACGCCAAAGTC
AGCCGCTGCCCGTGTGGTTCACTTCGAGGAGATGCGTCCGCAATATTACA
ATGTGCTGTGTCCCGTGCGCCATGACAATCGCAATCTGCATGCCATCCTC
AATGAATCCCAGCTAACGGCGGAAGGCACTCAACTGCATACGTATGTGGA
GCAACTGTTACCACTACTCCAGGACAACTGGATGGAGG
BO10356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-PA | 1914 | CG1575-RA | 1..922 | 17..938 | 4585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 2053 | CG1575-RB | 47..968 | 17..938 | 4595 | 99.9 | Plus |
| CG1575-RA | 2119 | CG1575-RA | 113..1034 | 17..938 | 4595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8117124..8118045 | 17..938 | 4595 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:13:47 has no hits.
BO10356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:25 Download gff for
BO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:30 Download gff for
BO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:32 Download gff for
BO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..1034 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:29 Download gff for
BO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..1034 | 17..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:29 Download gff for
BO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8117124..8118045 | 17..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:32 Download gff for
BO10356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8011157..8012078 | 17..938 | 99 | | Plus |
BO10356.complete Sequence
1945 bp (1945 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631718
> BO10356.complete
GAAGTTATCAGTCGACATGGGCGGCCACCACAAGAAGAACCTGCGTGCGG
AGAAGGCCAAAGTGAAGCTGAAGGGCGCCAAGCTGCCCAAGGGCCTGAAC
GTGACCAAGACGGACTTCAAGGTGCGCAAAATTGAGATTCGGGAGCAGCT
GAAGGAGTCCTCCTACTCGGAAACGGGCCAGCGACAGTTCAATCTCAAGG
AGACACTGTCCCGTCTGAAGCATCATAGTGTCAAGTTCCGCACTGATGCA
CAGCGCAATGTGCGCGACTCCCTGAAGTCCGGCAATGCGGACCATTTAAT
TGGTCATCTGAACGAGCTGTTCCAAGGAATTGCGGCCGGAGCTTTGGACA
TGGAGGGGTCGGCGCGAAAGGAATCATTCAAGACCCTTGATGTTCTGCTA
GAGGCACTGCAGCCACAAGCAGTGGCGCCCTTCTTCCATGTCATAGCCAC
CTATTTGCGTTGCGCCATGACTCACGTGCTGCCCGCCATCCAGGAGGACT
CGCTGCTCATGCTCGACGTCCTACTGTTGCGCGTACCACCGGCTTTCTTG
GCCGAGCGGAGTGCCAGCACCATAATTGGCAACTTCATCGACATGATCTC
CCGCGCCCGCCACGACAACGAGCGTTCGAATCGAACGTTGACATTGAACC
TGAGTCAGGGCAAGCAGACGACTGTGAAGTGGCGCACCAAGGTGCTTATC
CGTCTGCAGCAGATCCTCAGCACGCTAGTCACCTCGAAGACGCCAAAGTC
AGCCGCTGCCCGTGTGGTTCACTTCGAGGAGATGCGTCCGCAATATTACA
ATGTGCTGTGTCCCGTGCGCCATGACAATCGCAATCTGCATGCCATCCTC
AATGAATCCAAGCTAACGGCGGAAGGCACTCAACTGCATACGTATGTGGA
GCAACTGTTACCACTACTCCAGGACAACTGGATGGAGGTGCGGCCGCAGC
AGCAACAACCTCTGCTCAACCAAGATGCGGCGGCCAGTCTGCATGTGGTG
ATTGGTCTAATGAGTCTGCTCTGGAATCTAATTGAGCAGCATGAGGCGGA
GCACAATACCACGGAGCTAAGCGATTGGCTGAGGAAAAACTATGCCCAGA
AGTTCCTGCTCAACTTTTTGGACAAGGACGGCAGTCGTTTTCCCTATCAA
CAGATACCGCTGGCAACCAAGAATTCATCCAAGGACAAGGGAGCCGTAGA
TGGCGGAGAACTTTGTATGCCACAAAACCTGGGTATTGTCCAGCTGGCCT
GTAAGTTCTTTCCGACTCCCGTCGAGAGACAGACTCAAATGTTTGCGCAT
TTAATTGAGTACATGCACGAGACTTTGAAACGCCTTAATTCGCTTTCGCC
GGAGCAGCAGCTCTCACTGGTGGCTTCACTGCGTGCGCTGCTCTTCGAAA
ACGCCACATCGCTGATGAAAATCGTGACGGAGCCGTTGACCAGCCTGCTG
AGCGCATCCATTGATGCATATGTGAGCCAACGATTTACCACACGCGAAGG
CGTTGCCACTCGAGTGCTGAACCTTCTCTGCGAGATTGTGGAGCGTTCCG
ATTTGTACACGCACTTTGGCGGCGAACAGAGATTCACTCCGTTTCTCAGC
TATCTGCCGCAACTGCTGCTGAAGCCAACAGTGGGTGAGAGTACATTGCG
AGCCATGGCCACGCTCTGCCGCCAACTGAATGGAGTCTTCATGGCCGCTC
TAGTCCGTTCTGCTCCTGAGATAGTCAGTCACTTGGATAAGCTGCAGATC
ACGGGCGATATCGAAGGCCAAGAGAAGTTCGAAAACCAAAAGCGTGTTCT
TAACTTGTTCTACTATGCCAGAGAATTGGATAAAGAGGGAAAACTGGAGC
GTTCAGTTAAGCAGCTGGAGGAGCGGGTGGAGAGCAAAGGAATTGCCGAT
TACCTAAAGGCTGTACTCGGCTACAACGCAAGCTTTCTAGACCAT
BO10356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 1914 | CG1575-PB | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| CG1575-RA | 1914 | CG1575-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-RB | 2053 | CG1575-RB | 47..1957 | 17..1927 | 9555 | 100 | Plus |
| CG1575-RA | 2119 | CG1575-RA | 113..2023 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8117124..8119034 | 17..1927 | 9555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:37:26 has no hits.
BO10356.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:01 Download gff for
BO10356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 1..1914 | 17..1928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:32 Download gff for
BO10356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 62..1972 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:57 Download gff for
BO10356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..2023 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:01 Download gff for
BO10356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 62..1972 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:27 Download gff for
BO10356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1575-RA | 113..2023 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:27 Download gff for
BO10356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8117124..8119034 | 17..1929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:57 Download gff for
BO10356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8011157..8013067 | 17..1929 | 99 | | Plus |
BO10356.pep Sequence
Translation from 16 to 1945
> BO10356.pep
MGGHHKKNLRAEKAKVKLKGAKLPKGLNVTKTDFKVRKIEIREQLKESSY
SETGQRQFNLKETLSRLKHHSVKFRTDAQRNVRDSLKSGNADHLIGHLNE
LFQGIAAGALDMEGSARKESFKTLDVLLEALQPQAVAPFFHVIATYLRCA
MTHVLPAIQEDSLLMLDVLLLRVPPAFLAERSASTIIGNFIDMISRARHD
NERSNRTLTLNLSQGKQTTVKWRTKVLIRLQQILSTLVTSKTPKSAAARV
VHFEEMRPQYYNVLCPVRHDNRNLHAILNESKLTAEGTQLHTYVEQLLPL
LQDNWMEVRPQQQQPLLNQDAAASLHVVIGLMSLLWNLIEQHEAEHNTTE
LSDWLRKNYAQKFLLNFLDKDGSRFPYQQIPLATKNSSKDKGAVDGGELC
MPQNLGIVQLACKFFPTPVERQTQMFAHLIEYMHETLKRLNSLSPEQQLS
LVASLRALLFENATSLMKIVTEPLTSLLSASIDAYVSQRFTTREGVATRV
LNLLCEIVERSDLYTHFGGEQRFTPFLSYLPQLLLKPTVGESTLRAMATL
CRQLNGVFMAALVRSAPEIVSHLDKLQITGDIEGQEKFENQKRVLNLFYY
ARELDKEGKLERSVKQLEERVESKGIADYLKAVLGYNASFLDH
BO10356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1575-PB | 637 | CG1575-PB | 1..637 | 1..637 | 3230 | 100 | Plus |
| CG1575-PA | 637 | CG1575-PA | 1..637 | 1..637 | 3230 | 100 | Plus |
