Clone Sequence Records
BO10357.3prime Sequence
896 bp (823 high quality bases) assembled on 2006-04-19
> BO10357.3prime
ATGGTCTAGAAAGCTTGCCAACGTCATAATCTTCTCCAGCTCTATTTTTT
CTTTGTTGGCCGCTGCTGTCTTGCGAGCCCGAGCTCTTTTCTTTTGATCC
ACCTTACATCGACGTCGAAATTCTCGAGTTTGGGCTTCGCTCCACTTTTT
TAAACGTTGCCGTCTTACTGGAGCTTGTCTGGAGGGCTCTGGTATGGGCA
CCACCACCTTTCGACGCTGGACAGAGCGACCGTTGGCTTTTGCTGGAAAT
GCACAGGGCAGTAGATGGAGCTCCTCGTGCAGGCGGCCACAAAGAGTGGG
CGAGATCGGAAGGTAGCTGCTTTGCGTAAGGAAGGCTTGGTCGCTGGGGA
TGGATTCCGTGAGGAGCTGGTGTAGCTGAAAACTCTGTGGCGTGGCCTCC
TTGGTGACAATGCACAGCAGGAACTTATCCTTGTACTTGGGTGAGTATCG
CAGCAGGTAATCTCCAGCGGGTACCGTGTCCAGCAGCTTCAAAAACTCAC
ACAAGTTGGACAGTAGCTGCGGCATACTTGTGTTATAATAGTCATGAAGC
TGCTGCTCCAGCGAAATTAACGTCAGCTTCTCCTCCAGCATTGGCTCAAA
ATCCCGTAGCGAGATGCGTGTGCAGTGTCCCATCTCTGCCCGCATTAGCT
TTAACTGCACCCAGGCGCTTATCAACTCGTATTTGGACATTATTTCGCAA
CCGCAGTCTGGCTTGTTCTCCAGCTTAATGAAGTGGCATCCAAGTGGTTC
CTTGCCGCTGGAATCCTTAACTGCTGGTATGGATAGTGTGCTAAAGATTT
GAAAATCGTTGCAATCATCGCCTTCGCCTTTACATCTAAGGGTCCAACTA
ACCAAGGCGCTATTGCAGTTGCCATCTTTCATGTCTGATGGTTGCT
BO10357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10825-PB | 1890 | CG10825-RB | 1010..1887 | 896..19 | 4340 | 99.7 | Minus |
| CG10825-PA | 2055 | CG10825-RA | 1175..2052 | 896..19 | 4340 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ice2-RC | 2350 | CG10825-RC | 1248..2125 | 896..19 | 4360 | 99.8 | Minus |
| Ice2-RA | 2505 | CG10825-RA | 1403..2280 | 896..19 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21131618..21132495 | 896..19 | 4360 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:10:10 has no hits.
BO10357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:26 Download gff for
BO10357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-PA | 1175..2055 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:31 Download gff for
BO10357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-PA | 1175..2055 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:33:54 Download gff for
BO10357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RB | 1321..2201 | 15..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:51 Download gff for
BO10357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 1403..2283 | 15..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:51 Download gff for
BO10357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21131618..21132498 | 15..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:33:54 Download gff for
BO10357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16957340..16958220 | 15..896 | 99 | | Minus |
BO10357.5prime Sequence
901 bp (784 high quality bases) assembled on 2006-04-19
> BO10357.5prime
GAAGTTATCAGTCGACATGTTTTCAATGGACTCTTTTGCCATGGACAAGG
ATGCGAAGTTGTACGAAGGAAATGCTCTATTCCGAAACCAGCCGTCGTAC
AAGGTGTTCAATAAATCCTTCGAGCACGTGGACGATGCGCTGTACACATT
GCTGAACGAAGTGGAGCCAGATGTACTGCGAATGGAGCTCCAGGAAACGG
GCGATCTCTTTAAGTCGTTCAATCGCAACTCGGCCTTGAGGGATCCGCGC
AACAACGAGGTGCCACCGAAACCGACTCGCGACCTCACCACCGCCAGTTC
ACTCTACAGCTTTCCCAATCCCCTGGAGCAATACTCGGAGCTGAATCTTA
AGCAACAGGCCGCCTGCATGCGAGTGCTCCTCGCCTGGCAATGCAGTCAA
CCCGTCGATGAGCAGGACATCGTGGTGTGGCAGGCAACGGAAAAGAAGCG
ATACAACGAGCAGCAGCGTGTGCAGAAATACATACACGACCACGAGCAAG
GACGCAAGGAAGTCATCTACGCGCCCATGAAGAGCCTGGTGGCGGTCTAC
AGAAAGTGGTACGAACTGGGTGTTAAGAAACTTCAACAAACCTACCCCAA
TGACTCATATATGACCTTCTCCGGGCTGCCACAGCTGCCCCAGTGCAGGA
GTCTCAATGCTCAGACCGCCAGCATAGAGCAGGTGGAGCTGGAGCGGATT
GTCGGTCGGGTAAGACTCTTGCCAGAGGTGGAAGTTCGCCATGAAGCCCT
GCGGACATTACGACTGCGCTTGGATCGCTATGCGACGAGAGAAACAAGGG
CTCCTGTGCAGCTATTGCGGGAGGAAGACAAGGAACTGGAACTCGAAGCT
GGCAACGTCTTCGTGCTGCCCCTAAACTCGCTGTTTATGCTCCTTACCAC
G
BO10357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10825-PA | 2055 | CG10825-RA | 1..884 | 17..900 | 4370 | 99.7 | Plus |
| CG10825-PB | 1890 | CG10825-RB | 1..719 | 182..900 | 3545 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ice2-RA | 2505 | CG10825-RA | 229..1112 | 17..900 | 4390 | 99.8 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 183..691 | 50..558 | 2545 | 100 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 691..957 | 634..900 | 1305 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21130444..21131327 | 17..900 | 4390 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-12 20:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 753..814 | 488..426 | 123 | 70.3 | Minus |
BO10357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:27 Download gff for
BO10357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-PA | 1..884 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:32 Download gff for
BO10357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-PA | 1..884 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:36 Download gff for
BO10357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 181..1074 | 2..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:45 Download gff for
BO10357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 219..1112 | 2..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:45 Download gff for
BO10357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21130434..21131327 | 2..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:36 Download gff for
BO10357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16956156..16957049 | 2..901 | 99 | | Plus |
BO10357.complete Sequence
2086 bp (2086 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631719
> BO10357.complete
GAAGTTATCAGTCGACATGTTTTCAATGGACTCTTTTGCCATGGACAAGG
ATGCGAAGTTGTACGAAGGAAATGCTCTATTCCGAAACCAGCCGTCGTAC
AAGGTGTTCAATAAATCCTTCGAGCACGTGGACGATGCGCTGTACACATT
GCTGAACGAAGTGGAGCCAGATGTACTGCGAATGGAGCTCCAGGAAACGG
GCGATCTCTTTAAGTCGTTCAATCGCAACTCGGCCTTGAGGGATCCGCGC
AACAACGAGGTGCCACCGAAACCGACTCGCGACCTCACCACCGCCAGTTC
ACTCTACAGCTTTCCCAATCCCCTGGAGCAATACTCGGAGCTGAATCTTA
AGCAACAGGCCGCCTGCATGCGAGTGCTCCTCGCCTGGCAATGCAGTCAA
CCCGTCGATGAGCAGGACATCGTGGTGTGGCAGGCAACGGAAAAGAAGCG
ATACAACGAGCAGCAGCGTGTGCAGAAATACATACACGACCACGAGCAAG
GACGCAAGGAAGTCATCTACGCGCCCATGAAGAGCCTGGTGGCGGTCTAC
AGAAAGTGGTACGAACTGGGTGTTAAGAAACTTCAACAAACCTACCCCAA
TGACTCATATATGACCTTCTCCGGGCTGCCACAGCTGCCCCAGTGCAGGA
GTCTCAATGCTCAGACCGCCAGCATAGAGCAGGTGGAGCTGGAGCGGATT
GTCGGTCGGGTAAGACTCTTGCCAGAGGTGGAAGTTCGCCATGAAGCCCT
GCGGACATTACGACTGCGCTTGGATCGCTATGCGACGAGAGAAACAAGGG
CTCCTGTGCAGCTATTGCGGGAGGAAGACAAGGAACTGGAACTCGAAGCT
GGCAACGTCTTCGTGCTGCCCCTAGACTCGCTGTTAATGCTCCTTACCAC
CGGATCCTATATTGACCTGCCCACCGAAATGTTTCTCAGCCTAAGAGAAT
CGCCAAACAGCAAGCACAAGTGCATGGAGTTCCAGTCGCCATTCCCCCCC
CGCAACTGTGGTTGGCATACGAACAGTTTGATCTTGAAACTGGCTTATGG
AGCCTACATTTCACAGCCCGGACAAGCCAAGTGGCTGGATTTCAATATAA
ATGGAGCAGTCAAGGAGGTGCCAGATGAGCCTGCCTGTGATAAGTCATCC
ATCGATCTGCAGATGGTCTACAAGCCTCGCGCAATCGATCAGCAACCATC
AGACATTGAAGATGGCAACTGCAATAGCGCCTTGGTTAGTTGGACCCTTA
GATGTAAAGGCGAAGGCGATGATTGCAACGATTTTCAAATCTTTAGCACA
CTATCCATACCAGCAGTTAAGGATTCCAGCGGCAAGGAACCACTTGGATG
CCACTTCATTAAGCTGGAGAACAAGCCAGACTGCGGTTGCGAAATAATGT
CCAAATACGAGTTGATAAGCGCCTGGGTGCAGTTAAAGCTAATGCGGGCA
GAGATGGGACACTGCACACGCATCTCGCTACGGGATTTTGAGCCAATGCT
GGAGGAGAAGCTGACGTTAATTTCGCTGGAGCAGCAGCTTCATGACTATT
ATAACACAAGTATGCCGCAGCTACTGTCCAACTTGTGTGAGTTTTTGAAG
CTGCTGGACACGGTACCCGCTGGAGATTACCTGCTGCGATACTCACCCAA
GTACAAGGATAAGTTCCTGCTGTGCATTGTCACCAAGGAGGCCACGCCAC
AGAGTTTTCAGCTACACCAGCTCCTCACGGAATCCATCCCCAGCGACCAA
GCCTTCCTTACGCAAAGCAGCTACCTTCCGATCTCGCCCACTCTTTGTGG
CCGCCTGCACGAGGAGCTCCATCTACTGCCCTGTGCATTTCCAGCAAAAG
CCAACGGTCGCTCTGTCCAGCGTCGAAAGGTGGTGGTGCCCATACCAGAG
CCCTCCAGACAAGCTCCAGTAAGACGGCAACGTTTAAAAAAGTGGAGCGA
AGCCCAAACTCGAGAATTTCGACGTCGATGTAAGGTGGATCAAAAGAAAA
GAGCTCGGGCTCGCAAGACAGCAGCGGCCAACAAAGAAAAAATAGAGCTG
GAGAAGATTATGACGTTGGCAAGCTTTCTAGACCAT
BO10357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ice2-RA | 2055 | CG10825-PA | 1..2052 | 17..2068 | 10260 | 100 | Plus |
| Ice2-RC | 1185 | CG10825-PC | 1..1182 | 887..2068 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ice2-RA | 2505 | CG10825-RA | 229..2280 | 17..2068 | 10260 | 100 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 691..2125 | 634..2068 | 7175 | 100 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 183..691 | 50..558 | 2545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21130444..21132495 | 17..2068 | 10260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 753..814 | 488..426 | 123 | 70.3 | Minus |
BO10357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:02 Download gff for
BO10357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-RA | 1..2055 | 17..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:34 Download gff for
BO10357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-RA | 181..2245 | 2..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:51 Download gff for
BO10357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 198..2242 | 24..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:02 Download gff for
BO10357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-RA | 181..2245 | 2..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:55 Download gff for
BO10357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 236..2280 | 24..2070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:55 Download gff for
BO10357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21130451..21132495 | 24..2070 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:51 Download gff for
BO10357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16956173..16958217 | 24..2070 | 99 | | Plus |
BO10357.pep Sequence
Translation from 16 to 2086
> BO10357.pep
MFSMDSFAMDKDAKLYEGNALFRNQPSYKVFNKSFEHVDDALYTLLNEVE
PDVLRMELQETGDLFKSFNRNSALRDPRNNEVPPKPTRDLTTASSLYSFP
NPLEQYSELNLKQQAACMRVLLAWQCSQPVDEQDIVVWQATEKKRYNEQQ
RVQKYIHDHEQGRKEVIYAPMKSLVAVYRKWYELGVKKLQQTYPNDSYMT
FSGLPQLPQCRSLNAQTASIEQVELERIVGRVRLLPEVEVRHEALRTLRL
RLDRYATRETRAPVQLLREEDKELELEAGNVFVLPLDSLLMLLTTGSYID
LPTEMFLSLRESPNSKHKCMEFQSPFPPRNCGWHTNSLILKLAYGAYISQ
PGQAKWLDFNINGAVKEVPDEPACDKSSIDLQMVYKPRAIDQQPSDIEDG
NCNSALVSWTLRCKGEGDDCNDFQIFSTLSIPAVKDSSGKEPLGCHFIKL
ENKPDCGCEIMSKYELISAWVQLKLMRAEMGHCTRISLRDFEPMLEEKLT
LISLEQQLHDYYNTSMPQLLSNLCEFLKLLDTVPAGDYLLRYSPKYKDKF
LLCIVTKEATPQSFQLHQLLTESIPSDQAFLTQSSYLPISPTLCGRLHEE
LHLLPCAFPAKANGRSVQRRKVVVPIPEPSRQAPVRRQRLKKWSEAQTRE
FRRRCKVDQKKRARARKTAAANKEKIELEKIMTLASFLDH
BO10357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ice2-PA | 684 | CG10825-PA | 1..684 | 1..684 | 3584 | 100 | Plus |
| Ice2-PC | 394 | CG10825-PC | 1..394 | 291..684 | 2086 | 100 | Plus |
