Clone Sequence Records
BO10360.3prime Sequence
942 bp (826 high quality bases) assembled on 2006-04-19
> BO10360.3prime
ATGGTCTAGAAAGCTTGCGTTGCCCACGCCTTGGGCAACCTTGGATTCTT
CTCCTGCATTTGCTGCCGGTTCTAGGAGCTGGCGGAGTTCCTTTGCATTG
GTGGCCATTTCTGTTGAGTTTAGTACTACAACTTTTCGGCCAAGGGATTC
CAAAAGTCTTTTCTTAAGACGTATTAATGAAGTCGGTTTCTTGCTGAATT
TCAGAGTCTGTTCTGCGGTTAGCAGTTCAACAAAGTACACACTCTCCTGG
GCACCCATTGTCTGCACTCGTAAGCTTGGCAAATTTATTCCGACAATGGG
ACACACCACATCCACGCCCTCCACATCCGCGTCGCCACTCAGCTCCTGGG
CGTATTTCGTCAAGTCTGGGCGATCTTTTAGCAAATAAGCTGGTGCTCCA
TCAAACTCTTTAAAAGCTCGTTCTGTTTTAACTTTAGCAATTGAAGGCTG
CTCAATGGCCACAGCAGATCGCAGCACAATTAAACGACTATCCACCTTGG
GTTGGGCTCGCTGGCGTTTTTGGGCAGCTTTTAGTTCTTCAGCTGCATTA
ATCAGATCCTTAGAGTAGTGACCCAAAGTGCACAGAGAGAGGCAGGTGTC
AACAAGGTTGTCAGGGAAATATTCGTACTCCCCATGATCCAGCTTGCGCA
GGGCGGTCAGTTCCAATTGTCTGATTTCCTCAGGAGTCAATGCACAATTG
AGTTGAGCGCTGGCCCACAGGAATGTGGCCAAGTCTTTGGAGCGCAGGTC
TCCAGGCTTGAGAAGAGTCATGAGTCGTTTTACGACGACAGTTAGGCATT
CATTCTGATCCCAAAGCTGCTCGGCAAAGAATGCAAAGATATGGGCAAGT
CCTCGGGGTTCAATATGGGGTATCTTTACAGGATCCAGACAGATATCTTG
CANGTGCTGGCACACTCGTTCATCTTTGACTTGCTGCAGACG
BO10360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-PA | 1713 | CG4619-RA | 787..1710 | 942..19 | 4576 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1923 | CG4619-RB | 888..1811 | 942..19 | 4594 | 99.8 | Minus |
| CG4619-RA | 4136 | CG4619-RA | 888..1811 | 942..19 | 4594 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9939750..9940572 | 942..120 | 4074 | 99.6 | Minus |
| 2L | 23513712 | 2L | 9940629..9940733 | 123..19 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:24:49 has no hits.
BO10360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:30 Download gff for
BO10360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 787..1713 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:37 Download gff for
BO10360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 787..1713 | 16..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:55 Download gff for
BO10360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 888..1817 | 11..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:00 Download gff for
BO10360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 888..1817 | 11..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:00 Download gff for
BO10360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9939750..9940568 | 124..942 | 99 | -> | Minus |
| 2L | 9940629..9940739 | 11..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:55 Download gff for
BO10360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9939750..9940568 | 124..942 | 99 | -> | Minus |
| arm_2L | 9940629..9940739 | 11..123 | 96 | | Minus |
BO10360.5prime Sequence
891 bp (845 high quality bases) assembled on 2006-04-19
> BO10360.5prime
GAAGTTATCAGTCGACATGTACGCCCTGCTTCGCCGCTTTGCCGGCGTCA
CCAACTTGGGATGTCCCATCAGAACCTACGCCTCCCTTACGCCCAGAGAT
GTATTGCGGAGCAGCGATGAGACCGGCACACTGCTGACCCGCTTCGCCAA
GCACATTGCACTGGAGCGCTACAGGGATTCGGATCACGTGTTGCCCAAGA
CGACGGTCCGGTACTCTGACTTCTTTCCCATCACGGACGACCGGTACTTT
CAGCGGACGGTAGAGAAAACGGATGCAGCCCAATTGCCCGCCCTGATCAT
CCAGGCATCCAGCTATCGCTCCAATGCCGCTGTACCCATGTATGTGACTG
CGCTTAACACGTTGGATAACCATGCGGCTAAACAGCTGGACAAGATGGAT
ACCGCCACAGTGCTCGAGACGCTCTACTCCTTTCTATTCCTCATACCAAG
TTGGATAAAGCGATTGGATTTTTACCAAGCAGCCATGCAACGACTGGTCA
GGGAGGATTTTCGCGGCAACAAGGAGCGATTCGTTCAGGTGTGCTTCTAT
ATGGGATTGCAAAAGAAGCAGGCCAAATCTTCTGAGGAATTCCAGCAACT
CCTGGAAGAGCATCTACAAACGCATTTGCCTGAACTAAATGAAATGGACC
TTGCCGTGGTCAGCAATGCGGCGTACAAAACCTCAACTTTGGTAACCGGT
GAGGCGAANACGGCATACGAAGCAAGACTCGTTAATGCCATATTAAATCT
GGAGATAAACACCGGAAGCGATGCCTTGCTGGTCTCCTTTGTCAAGGCAT
TGCGTCTGCAGCAAGTCAAAGATGAACGAGTGTGCCAGCACCTGCAAGAT
ATCTGTCTGGATCCTGTAAAGATAACCCATATTGAACCCCG
BO10360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-PA | 1713 | CG4619-RA | 1..875 | 17..891 | 4356 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1923 | CG4619-RB | 98..976 | 13..891 | 4369 | 99.8 | Plus |
| CG4619-RA | 4136 | CG4619-RA | 98..976 | 13..891 | 4369 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9938960..9939838 | 13..891 | 4369 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:39:28 has no hits.
BO10360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:31 Download gff for
BO10360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:38 Download gff for
BO10360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:24:28 Download gff for
BO10360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 94..976 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:04:27 Download gff for
BO10360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 94..976 | 9..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:04:27 Download gff for
BO10360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9938956..9939838 | 9..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:24:28 Download gff for
BO10360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9938956..9939838 | 9..891 | 99 | | Plus |
BO10360.complete Sequence
1744 bp (1744 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631720
> BO10360.complete
GAAGTTATCAGTCGACATGTACGCCCTGCTTCGCCGCTTTGCCGGCGTCA
CCAACTTGGGATGTCCCATCAGAACCTACGCCTCCCTTACGCCCAGAGAT
GTATTGCGGAGCAGCGATGAGACCGGCACACTGCTGACCCGCTTCGCCAA
GCACATTGCACTGGAGCGCTACAGGGATTCGGATCACGTGTTGCCCAAGA
CGACGGTCCGGTACTCTGACTTCTTTCCCATCACGGACGACCGGTACTTT
CAGCGGACGGTAGAGAAAACGGATGCAGCCCAATTGCCCGCCCTGATCAT
CCAGGCATCCAGCTATCGCTCCAATGCCGCTGTACCCATGTATGTGACTG
CGCTTAACACGTTGGATAACCATGCGGCTAAACAGCTGGACAAGATGGAT
ACCGCCACAGTGCTCGAGACGCTCTACTCCTTTCTATTCCTCATACCAAG
TTGGATAAAGCGATTGGATTTTTACCAAGCAGCCATGCAACGACTGGTCA
GGGAGGATTTTCGCGGCAACAAGGAGCGATTCGTTCAGGTGTGCTTCTAT
ATGGGATTGCAAAAGAAGCAGGCCAAATCTTCTGAGGAATTCCAGCAACT
CCTGGAAGAGCATCTACAAACGCATTTGCCTGAACTAAATGAAATGGACC
TTGCCGTGGTCAGCAATGCGGCGTACAAAACCTCAACTTTGGTAACCGGT
GAGGCGAAAACGGCATACGAAGCAAGACTCGTTAATGCCATATTAAATCT
GGAGATAAACACCGGAAGCGATGCCTTGCTGGTCTCCTTTGTCAAGGCAT
TGCGTCTGCAGCAAGTCAAAGATGAACGAGTGTGCCAGCACCTGCAAGAT
ATCTGTCTGGATCCTGTAAAGATAACCCATATTGAACCCCGAGGACTTGC
CCATATCTTTGCATTCTTTGCCGAGCAGCTTTGGGATCAGAATGAATGCC
TAACTGTCGTCGTAAAACGACTCATGACTCTTCTCAAGCCTGGAGACCTG
CGCTCCAAAGACTTGGCCACATTCCTGTGGGCCAGCGCTCAACTCAATTG
TGCATTGACTCCTGAGGAAATCAGACAATTGGAACTGACCGCCCTGCGCA
AGCTGGATCATGGGGAGTACGAATATTTCCCTGACAACCTTGTTGACACC
TGCCTCTCTCTGTGCACTTTGGGTCACTACTCTAAGGATCTGATTAATGC
AGCTGAAGAACTAAAAGCTGCCCAAAAACGCCAGCGAGCCCAACCCAAGG
TGGATAGTCGTTTAATTGTGCTGCGATCTGCTGTGGCCATTGAGCAGCCT
TCAATTGCTAAAGTTAAAACAGAACGAGCTTTTAAAGAGTTTGATGGAGC
ACCAGCTTATTTGCTAAAAGATCGCCCAGACTTGACGAAATACGCCCAGG
AGCTGAGTGGCGACGCGGATGTGGAGGGCGTGGATGTGGTGTGTCCCATT
GTCGGAATAAATTTGCCAAGCTTACGAGTGCAGACAATGGGTGCCCAGGA
GAGTGTGTACTTTGTTGAACTGCTAACCGCAGAACAGACTCTGAAATTCA
GCAAGAAACCGACTTCATTAATACGTCTTAAGAAAAGACTTTTGGAATCC
CTTGGCCGAAAAGTTGTAGTACTAAACTCAACAGAAATGGCCACCAATGC
AAAGGAACTCCGCCAGCTCCTAGAACCGGCAGCAAATGCAGGAGAAGAAT
CCAAGGTTGCCCAAGGCGTGGGCAACGCAAGCTTTCTAGACCAT
BO10360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1713 | CG4619-PB | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| CG4619-RA | 1713 | CG4619-PA | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-RB | 1923 | CG4619-RB | 98..1811 | 13..1726 | 8555 | 99.9 | Plus |
| CG4619-RA | 4136 | CG4619-RA | 98..1811 | 13..1726 | 8555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9938960..9940572 | 13..1625 | 8035 | 99.9 | Plus |
| 2L | 23513712 | 2L | 9940629..9940733 | 1622..1726 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:45:45 has no hits.
BO10360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:03 Download gff for
BO10360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 1..1713 | 17..1729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:35 Download gff for
BO10360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 92..1815 | 9..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:45 Download gff for
BO10360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 102..1811 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:04 Download gff for
BO10360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 92..1815 | 9..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:59 Download gff for
BO10360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4619-RA | 102..1811 | 17..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:59 Download gff for
BO10360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9938964..9940568 | 17..1621 | 100 | -> | Plus |
| 2L | 9940629..9940733 | 1622..1728 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:45 Download gff for
BO10360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9938964..9940568 | 17..1621 | 100 | -> | Plus |
| arm_2L | 9940629..9940733 | 1622..1728 | 98 | | Plus |
BO10360.pep Sequence
Translation from 16 to 1744
> BO10360.pep
MYALLRRFAGVTNLGCPIRTYASLTPRDVLRSSDETGTLLTRFAKHIALE
RYRDSDHVLPKTTVRYSDFFPITDDRYFQRTVEKTDAAQLPALIIQASSY
RSNAAVPMYVTALNTLDNHAAKQLDKMDTATVLETLYSFLFLIPSWIKRL
DFYQAAMQRLVREDFRGNKERFVQVCFYMGLQKKQAKSSEEFQQLLEEHL
QTHLPELNEMDLAVVSNAAYKTSTLVTGEAKTAYEARLVNAILNLEINTG
SDALLVSFVKALRLQQVKDERVCQHLQDICLDPVKITHIEPRGLAHIFAF
FAEQLWDQNECLTVVVKRLMTLLKPGDLRSKDLATFLWASAQLNCALTPE
EIRQLELTALRKLDHGEYEYFPDNLVDTCLSLCTLGHYSKDLINAAEELK
AAQKRQRAQPKVDSRLIVLRSAVAIEQPSIAKVKTERAFKEFDGAPAYLL
KDRPDLTKYAQELSGDADVEGVDVVCPIVGINLPSLRVQTMGAQESVYFV
ELLTAEQTLKFSKKPTSLIRLKKRLLESLGRKVVVLNSTEMATNAKELRQ
LLEPAANAGEESKVAQGVGNASFLDH
BO10360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4619-PB | 570 | CG4619-PB | 1..570 | 1..570 | 2878 | 100 | Plus |
| CG4619-PA | 570 | CG4619-PA | 1..570 | 1..570 | 2878 | 100 | Plus |
