Clone Sequence Records
BO10364.3prime Sequence
951 bp (795 high quality bases) assembled on 2006-04-19
> BO10364.3prime
ATGGTCTAGAAAGCTTGCGGTCTGCTCGTCCACTCGAGCTGGTGTTACCG
TAAATCTCTTGGAGCTCGCGACTTGGATGGCCGCATCCCTAGCTGGCTCG
TCCTTTCCCACTTGCGATGGCATGCTCGCGAATCGTGGACGTGGCTGTGG
AGGACTCAGCTGAACGGAGACCTCGTGGCTCCGTTGCGATGGTCTGCTTA
CTACGCTGTGGCGTTGGCGTCGTTCTACTGCTGGTGGATTAAACCCTATT
CTCGACGCATACAATTGTTCCAGGCGATGGATGGTGGAGATGCCGGCGCC
AGGCGGTTGTGGCATTGAGAAACTATGTCGGTTGCTGAGCGGCGACCAAG
TGTGCTGGTAGTTTGATTCGTCCAGATGGCGCAGGAACTGACGATTGATG
GAGCCCAGTGCGTGCTTGTCTTCGGTGGCCAGATTGGCTATTAGCTCGTT
GAGTATCTCCGACTCCGTTTCCACTTTGCCATTACGCGCCAGCTTTATGT
CGTGCTTCCAGAACTGTCGGTTTTTGCGCCCAATCACCGGGGCAATCTCC
TTTACCTTCAGCACCAGGATGCCCATGAGATAGACGCACAGAACGTTGGA
CAAAGTTAGGCACATGCTGATGCCGCCGAGCACGGCCAATTCAGTGGCCT
GGTTGTCCGAGTAGCGGCGCGATTTAATCACATCCACGTAGAGCGAATCG
TCGTTCTCGAATATCTTGTAAATGCAGGCCACCGCCCACAGCAGACCGGA
GTTAACCGCAGGCGGTAGCAGCGATGCCGATATGGCCACGCCAACCAGAG
AACCAATATTCCCGCCCAGGATTCCGATGGCAGCCGCCGCTCCCGACGGT
ATGGCCGTGAATACCCAACGACGAGGGAGTGCAGATCGCAGCGGGATAGC
ATCTCCTCCGTCAGTCCCTCACAATGCCATACTTGCGATCCGTGGTGCAC
A
BO10364.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-PA | 1818 | CG7384-RA | 968..1815 | 866..19 | 4240 | 100 | Minus |
| CG7384-PA | 1818 | CG7384-RA | 911..969 | 922..864 | 295 | 100 | Minus |
| CG7384-PA | 1818 | CG7384-RA | 881..910 | 951..922 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-RA | 2261 | CG7384-RA | 1096..2030 | 951..19 | 4625 | 99.8 | Minus |
| CG12446-RA | 2644 | CG12446-RA | 1107..1300 | 919..727 | 225 | 74.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10508270..10509081 | 142..951 | 3960 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10508090..10508212 | 19..141 | 615 | 100 | Plus |
| X | 23542271 | X | 22810636..22810829 | 727..919 | 200 | 74.7 | Plus |
Blast to na_te.dros performed 2015-02-06 16:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 2162..2244 | 496..417 | 110 | 62.7 | Minus |
BO10364.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:37 Download gff for
BO10364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-PA | 882..1818 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:49 Download gff for
BO10364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-PA | 882..1818 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:19 Download gff for
BO10364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 1097..2030 | 19..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:17:21 Download gff for
BO10364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 1097..2030 | 19..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:17:21 Download gff for
BO10364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10508090..10508212 | 19..141 | 100 | <- | Plus |
| 2L | 10508270..10509080 | 142..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:19 Download gff for
BO10364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10508090..10508212 | 19..141 | 100 | <- | Plus |
| arm_2L | 10508270..10509080 | 142..950 | 99 | | Plus |
BO10364.5prime Sequence
943 bp (821 high quality bases) assembled on 2006-04-19
> BO10364.5prime
GAAGTTATCAGTCGACATGACGGGAACAGCGGCAGTGCGACTCAGCATTA
CGATACCCACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAG
GTGGTCAATGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTC
AACCATTGAAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGC
AGAGCCACAAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGC
CACGATCAGCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGT
GCGCCAGATCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCA
GTCTAGAGGGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAA
CGCTACGAGAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCG
TGAGGGATCTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACG
TTCAGCGTGAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAA
CACATCAATGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGT
GCGATCCCGATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATG
CGGCTATTACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTG
GCGAGCTTTGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCAT
GCTCATTTCCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTG
TGATCCAGGATCGATCGCTCCGCAAGCTGGGCATGCTGAACGAACTGATT
GGTATACTGACCGCCACACTGGTGGGTTTCCTATTCGGTCTGGTTGTGTG
CACCACGGATCGCAAGTATGGCATTGGTGAGGGACTGACGGAG
BO10364.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-PA | 1818 | CG7384-RA | 1..927 | 17..943 | 4610 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-RA | 2261 | CG7384-RA | 216..1142 | 17..943 | 4620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10509706..10510238 | 549..17 | 2665 | 100 | Minus |
| 2L | 23513712 | 2L | 10509035..10509284 | 943..694 | 1235 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10509500..10509643 | 693..550 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:12:48 has no hits.
BO10364.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:38 Download gff for
BO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:50 Download gff for
BO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:12 Download gff for
BO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 216..1142 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:40 Download gff for
BO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 216..1142 | 17..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:40 Download gff for
BO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10509035..10509284 | 694..943 | 99 | <- | Minus |
| 2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
| 2L | 10509706..10510238 | 17..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:12 Download gff for
BO10364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10509035..10509284 | 694..943 | 99 | <- | Minus |
| arm_2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
| arm_2L | 10509706..10510238 | 17..549 | 100 | | Minus |
BO10364.complete Sequence
1849 bp (1849 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631721
> BO10364.complete
GAAGTTATCAGTCGACATGACGGGAACAGCGGCAGTGCGACTCAGCATTA
CGATACCCACGAAGGCGGAGGAGGAGCGCCTGAAGAAGGTGTACGTCCAG
GTGGTCAATGGAGAGGTCGCCACGCCCATGGGTACCGCCAGCAGAACCTC
AACCATTGAAAGCTTATCGACCATTCGGATCGGGGAATCCCCGGAACGGC
AGAGCCACAAAGTCCTAAATACCTTGCCAAAGATTGAAATTCAGACGTGC
CACGATCAGCTGCTTGATATCCCACTGGACACGGACCAGGAGCAGGTGGT
GCGCCAGATCCTGCACAGATTTCACATACCCAATGCCGTTTGGCTGCCCA
GTCTAGAGGGTAATGCTTACCACATCAGCTTCTCCATGGACTTTGACGAA
CGCTACGAGAATCTCTATGAGGCGCTGCAGGAATTCGGCATCGGTGATCG
TGAGGGATCTACAGTATCCGTGGTCAGCTGCCTGGCCCACAGATCCTACG
TTCAGCGTGAGGATACGGAGGAGCAGGAGGACCAACCATCGAGCACAGAA
CACATCAATGCCCAGAAGCAGGGTATCTGGGATCGGTTCATGAACTCGGT
GCGATCCCGATTGAATGTGGCACAGATCGTAAGGGATGTGCGCCAGGATG
CGGCTATTACCTTCGACTTTTGCATACTCCTAGTTTCGGCGGCAGTTCTG
GCGAGCTTTGGCCTGGTGGAGAATAGCACGATTTTCCTGGCCTCCAGCAT
GCTCATTTCCCCACTGATGGGTCCCATAATAGCGGCCATCTTTGGAACTG
TGATCCAGGATCGATCGCTCCGCAGGCTGGGCATGCTGAACGAACTGATT
GGTATACTGACCGCCACACTGGTGGGTTTCCTATTCGGTCTGGTTGTGTG
CACCACGGATCGCAAGTATGGCATTGGTGAGGGACTGACGGAGGAGATGC
TATCCCGCTGCGATCTGCACTCCCTCGTCGTTGGGGTATTCACGGCCATA
CCGTCGGGAGCGGCGGCTGCCATCGGAATCCTGGGCGGGAATATTGGTTC
TCTGGTTGGCGTGGCCATATCGGCATCGCTGCTACCGCCTGCGGTTAACT
CCGGTCTGCTGTGGGCGGTGGCCTGCATTTACAAGATATTCGAGAACGAC
GATTCGCTCTACGTGGATGTGATTAAATCGCGCCGCTACTCGGACAACCA
GGCCACTGAATTGGCCGTGCTCGGCGGCATCAGCATGTGCCTAACTTTGT
CCAACGTTCTGTGCGTCTATCTCATGGGCATCCTGGTGCTGAAGGTAAAG
GAGATTGCCCCGGTGATTGGGCGCAAAAACCGACAGTTCTGGAAGCACGA
CATAAAGCTGGCGCGTAATGGCAAAGTGGAAACGGAGTCGGAGATACTCA
ACGAGCTAATAGCCAATCTGGCCACCGAAGACAAGCACGCACTGGGCTCC
ATCAATCGTCAGTTCCTGCGCCATCTGGACGAATCAAACTACCAGCACAC
TTGGTCGCCGCTCAGCAACCGACATAGTTTCTCAATGCCACAACCGCCTG
GCGCCGGCATCTCCACCATCCATCGCCTGGAACAATTGTATGCGTCGAGA
ATAGGGTTTAATCCACCAGCAGTAGAACGACGCCAACGCCACAGCGTAGT
AAGCAGACCATCGCAACGGAGCCACGAGGTCTCCGTTCAGCTGAGTCCTC
CACAGCCACGTCCACGATTCGCGAGCATGCCATCGCAAGTGGGAAAGGAC
GAGCCAGCTAGGGATGCGGCCATCCAAGTCGCGAGCTCCAAGAGATTTAC
GGTAACACCAGCTCGAGTGGACGAGCAGACCGCAAGCTTTCTAGACCAT
BO10364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-RA | 1818 | CG7384-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| CG12446-RA | 2130 | CG12446-PA | 974..1167 | 930..1123 | 235 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-RA | 2261 | CG7384-RA | 216..2030 | 17..1831 | 9075 | 100 | Plus |
| CG12446-RA | 2644 | CG12446-RA | 1107..1300 | 930..1123 | 235 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10508270..10509284 | 1708..694 | 5075 | 100 | Minus |
| 2L | 23513712 | 2L | 10509706..10510238 | 549..17 | 2665 | 100 | Minus |
| 2L | 23513712 | 2L | 10509500..10509643 | 693..550 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 10508090..10508212 | 1831..1709 | 615 | 100 | Minus |
| X | 23542271 | X | 22810636..22810829 | 1123..930 | 235 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:21 has no hits.
BO10364.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:05 Download gff for
BO10364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 1..1818 | 17..1832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:37 Download gff for
BO10364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 224..2038 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:49 Download gff for
BO10364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 216..2030 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:05 Download gff for
BO10364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 224..2038 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:42 Download gff for
BO10364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7384-RA | 216..2030 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:42 Download gff for
BO10364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10508088..10508212 | 1709..1833 | 98 | <- | Minus |
| 2L | 10508270..10509284 | 694..1708 | 100 | <- | Minus |
| 2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
| 2L | 10509706..10510238 | 17..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:49 Download gff for
BO10364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10508088..10508212 | 1709..1833 | 98 | <- | Minus |
| arm_2L | 10508270..10509284 | 694..1708 | 100 | <- | Minus |
| arm_2L | 10509500..10509643 | 550..693 | 100 | <- | Minus |
| arm_2L | 10509706..10510238 | 17..549 | 100 | | Minus |
BO10364.pep Sequence
Translation from 16 to 1849
> BO10364.pep
MTGTAAVRLSITIPTKAEEERLKKVYVQVVNGEVATPMGTASRTSTIESL
STIRIGESPERQSHKVLNTLPKIEIQTCHDQLLDIPLDTDQEQVVRQILH
RFHIPNAVWLPSLEGNAYHISFSMDFDERYENLYEALQEFGIGDREGSTV
SVVSCLAHRSYVQREDTEEQEDQPSSTEHINAQKQGIWDRFMNSVRSRLN
VAQIVRDVRQDAAITFDFCILLVSAAVLASFGLVENSTIFLASSMLISPL
MGPIIAAIFGTVIQDRSLRRLGMLNELIGILTATLVGFLFGLVVCTTDRK
YGIGEGLTEEMLSRCDLHSLVVGVFTAIPSGAAAAIGILGGNIGSLVGVA
ISASLLPPAVNSGLLWAVACIYKIFENDDSLYVDVIKSRRYSDNQATELA
VLGGISMCLTLSNVLCVYLMGILVLKVKEIAPVIGRKNRQFWKHDIKLAR
NGKVETESEILNELIANLATEDKHALGSINRQFLRHLDESNYQHTWSPLS
NRHSFSMPQPPGAGISTIHRLEQLYASRIGFNPPAVERRQRHSVVSRPSQ
RSHEVSVQLSPPQPRPRFASMPSQVGKDEPARDAAIQVASSKRFTVTPAR
VDEQTASFLDH
BO10364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7384-PA | 605 | CG7384-PA | 1..605 | 1..605 | 3063 | 100 | Plus |
| CG12446-PA | 709 | CG12446-PA | 3..510 | 5..506 | 971 | 44 | Plus |
| CG34109-PC | 800 | CG34109-PC | 157..519 | 92..450 | 608 | 36 | Plus |
