Clone Sequence Records
BO10365.3prime Sequence
947 bp (861 high quality bases) assembled on 2006-04-19
> BO10365.3prime
ATGGTCTAGAAAGCTTGCCTGACGCCACCAACTCGGGTCGCCGGAGCTCT
GCTGGCCATTGTCGGGATTGGGATTCGTGCTGGCATTTCCACGCCCCAAA
ATGGGCGGCGGCGGCACACTGAACATATTGTGATGCGCAGGCGGCGGCCG
GTACTTCTCCTCATCCTCATCGTCGATCTCACGCTTGATGGTCGCGTTCT
GGTAGTCAAATGTGGGATAGCCATCGTCGACGGGCTCCTCCTTGATCTTG
ATGACATCCATATCACGGAAATCGGGCTTGCGCTCCTTGACATCGCCGCC
GGATCCGGTGCCGCGTTCTCGATCCCTTCTCTCTCGCTTCCGTTCGCGAC
GCTCCCTGGAGGATTCGCGTTCGCGAGACTTGGAGCGCTTCTTTTTCTTC
TCACGCTCGCGATCGCGATCACGCTCGCGCTCCCTGTCCCGCCGATCGCG
GCGGTCGAACTCGTCGTACCGCTCCCGGCTGCCCGCTCGTCGTTTTCTGC
GCTCGCGAGAACGGCTGCGCGAGCGACCGTTGCTAGCCACAGCGCCCCGT
CCGCGATCTCGTTCACGGTCGCGGCGTTCCCTGGAGCGGGAACGTCGACG
TTCCGCACCGAAACCGCGTCCGGGCCGGGCATCCAGGCCATTGGAGCCGC
CGCCGCGTCCAGGACCCTCGCGATCCTCACGCTCCCGCTCCAGCCGGTAG
CGCTCGCGTTCCCTCTCGTTGTCCTCGCGGCCGGAGTGCTTAATGTTGAC
ATCGTTGCCGCCGCGGCGCGTTCCACCCAGACCGCCGCCCAGGCGTCGGG
GCAGCCAGCCCTTGACCGTGCGAGCCCGCTCCACGTCCACCAGGACGCGC
TTGCTGTCGATCTTCTACCATCGGCGTGCTTGTAGGCGGCATGCATGTCC
CGCTCGTGCTCGTACTCGATGAAGGCGTAGCCCTTGGGGTTTACTGA
BO10365.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8749-PA | 1347 | snRNP70K-RA | 497..1344 | 866..19 | 4240 | 100 | Minus |
| CG8749-PA | 1347 | snRNP70K-RA | 424..496 | 938..866 | 365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 2948 | CG8749-RC | 615..1540 | 944..19 | 4585 | 99.8 | Minus |
| snRNP-U1-70K-RA | 1834 | CG8749-RA | 615..1540 | 944..19 | 4585 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6970119..6971039 | 19..938 | 4555 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:50:51 has no hits.
BO10365.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:39 Download gff for
BO10365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 416..1347 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:52 Download gff for
BO10365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 416..1347 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:34:59 Download gff for
BO10365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 612..1540 | 19..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:01 Download gff for
BO10365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 612..1540 | 19..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:01 Download gff for
BO10365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6970119..6971047 | 19..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:34:59 Download gff for
BO10365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6970119..6971047 | 19..946 | 99 | | Plus |
BO10365.5prime Sequence
921 bp (829 high quality bases) assembled on 2006-04-19
> BO10365.5prime
GAAGTTATCAGTCGACATGACCCAATATCTGCCGCCGAATCTGCTGGCGC
TGTTCGCGGCACGGGAGCCCATCCCGTTCATGCCGCCGGTGGACAAGCTG
CCGCACGAGAAGAAGTCTCGCGGCTACCTGGGAGTGGCCAAGTTCATGGC
CGATTTCGAGGATCCCAAGGACACGCCGCTGCCGAAAACGGTGGAAACGC
GTCAGGAGCGGCTGGAGCGACGCCGGCGCGAGAAGGCCGAGCAAGTGGCC
TACAAGCTGGAGCGTGAGATAGCGCTGTGGGACCCCACAGAGATCAAAAA
TGCCACGGAGGACCCGTTTCGCACGCTGTTCATTGCACGCATCAACTACG
ACACGTCCGAGTCGAAGCTGCGGCGTGAGTTCGAGTTCTACGGGCCCATC
AAGAAGATCGTCCTGATCCACGACCAGGAATCAGGTAAACCCAAGGGCTA
CGCCTTCATCGAGTACGAGCACGAGCGGGACATGCATGCCGCCTACAAGC
ACGCCGATGGTAAGAAGATCGACAGCAAGCGCGTCCTGGTGGACGTGGAG
CGGGCTCGCACGGTCAAGGGCTGGCTGCCCCGACGCCTGGGCGGCGGTCT
GGGTGGAACGCGCCGCGGCGGCAACGATGTCAACATTAAGCACTCCGGCC
GCGAGGACAACGAGAGGGAACGCGAGCGCTACCGGCTGGAGCGGGAGCGT
GAGGATCGCGAGGGTCCTGGACGCGGCGGCGGCTCCAATGGCCTGGATGC
CCGGCCCGGACGCGGTTTCGGTGCGGAACGTCGACGTTCCCGCTCCAGGG
AACGCCGCGACCGTGAACGAGATCGCGGACGGGGCGCTGTGGCTAGCAAC
GGTCGCTCGCGCAGCCGTTCTCGCGAGCGCAGAAAACGACAAGCGGGCAG
CCGGGAGCGGTACGACGAGTT
BO10365.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8749-PA | 1347 | snRNP70K-RA | 1..905 | 17..921 | 4500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 2948 | CG8749-RC | 197..1101 | 17..921 | 4510 | 99.9 | Plus |
| snRNP-U1-70K-RA | 1834 | CG8749-RA | 197..1101 | 17..921 | 4510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6970558..6971462 | 921..17 | 4510 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:31 has no hits.
BO10365.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:40 Download gff for
BO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:53 Download gff for
BO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8749-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:46 Download gff for
BO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 191..1101 | 9..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:01 Download gff for
BO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 191..1101 | 9..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:01 Download gff for
BO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6970558..6971465 | 13..921 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:46 Download gff for
BO10365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6970558..6971465 | 13..921 | 99 | -> | Minus |
BO10365.complete Sequence
1378 bp assembled on 2007-10-17
GenBank Submission: FJ631722
> BO10365.complete
GAAGTTATCAGTCGACATGACCCAATATCTGCCGCCGAATCTGCTGGCGC
TGTTCGCGGCACGGGAGCCCATCCCGTTCATGCCGCCGGTGGACAAGCTG
CCGCACGAGAAGAAGTCTCGCGGCTACCTGGGAGTGGCCAAGTTCATGGC
CGATTTCGAGGATCCCAAGGACACGCCGCTGCCGAAAACGGTGGAAACGC
GTCAGGAGCGGCTGGAGCGACGCCGGCGCGAGAAGGCCGAGCAAGTGGCC
TACAAGCTGGAGCGTGAGATAGCGCTGTGGGACCCCACAGAGATCAAAAA
TGCCACGGAGGACCCGTTTCGCACGCTGTTCATTGCACGCATCAACTACG
ACACGTCCGAGTCGAAGCTGCGGCGTGAGTTCGAGTTCTACGGGCCCATC
AAGAAGATCGTCCTGATCCACGACCAGGAATCAGGTAAACCCAAGGGCTA
CGCCTTCATCGAGTACGAGCACGAGCGGGACATGCATGCCGCCTACAAGC
ACGCCGATGGTAAGAAGATCGACAGCAAGCGCGTCCTGGTGGACGTGGAG
CGGGCTCGCACGGTCAAGGGCTGGCTGCCCCGACGCCTGGGCGGCGGTCT
GGGTGGAACGCGCCGCGGCGGCAACGATGTCAACATTAAGCACTCCGGCC
GCGAGGACAACGAGAGGGAACGCGAGCGCTACCGGCTGGAGCGGGAGCGT
GAGGATCGCGAGGGTCCTGGACGCGGCGGCGGCTCCAATGGCCTGGATGC
CCGGCCCGGACGCGGTTTCGGTGCGGAACGTCGACGTTCCCGCTCCAGGG
AACGCCGCGACCGTGAACGAGATCGCGGACGGGGCGCTGTGGCTAGCAAC
GGTCGCTCGCGCAGCCGTTCTCGCGAGCGCAGAAAACGACGAGCGGGCAG
CCGGGAGCGGTACGACGAGTTCGACCGCCGCGATCGGCGGGACAGGGAGC
GCGAGCGTGATCGCGATCGCGAGCGTGAGAAGAAAAAGAAGCGCTCCAAG
TCTCGCGAACGCGAATCCTCCAGGGAGCGTCGCGAACGGAAGCGAGAGAG
AAGGGATCGAGAACGCGGCACCGGATCCGGCGGCGATGTCAAGGAGCGCA
AGCCCGATTTCCGTGATATGGATGTCATCAAGATCAAGGAGGAGCCCGTC
GACGATGGCTATCCCACATTTGACTACCAGAACGCGACCATCAAGCGTGA
GATCGACGATGAGGATGAGGAGAAGTACCGGCCGCCGCCTGCGCATCACA
ATATGTTCAGTGTGCCGCCGCCGCCCATTTTGGGGCGTGGAAATGCCAGC
ACGAATCCCAATCCCGACAATGGCCAGCAGAGCTCCGGCGACCCGAGTTG
GTGGCGTCAGGCAAGCTTTCTAGACCAT
BO10365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 1347 | CG8749-PC | 1..1344 | 17..1360 | 6720 | 100 | Plus |
| snRNP-U1-70K-RA | 1347 | CG8749-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-RC | 2948 | CG8749-RC | 197..1540 | 17..1360 | 6720 | 100 | Plus |
| snRNP-U1-70K-RA | 1834 | CG8749-RA | 197..1540 | 17..1360 | 6720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6970119..6971462 | 1360..17 | 6720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:21:26 has no hits.
BO10365.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:03 Download gff for
BO10365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP70K-RA | 1..1347 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:28 Download gff for
BO10365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP70K-RA | 190..1539 | 9..1360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:51 Download gff for
BO10365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 197..1540 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:07 Download gff for
BO10365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP70K-RA | 196..1539 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:40 Download gff for
BO10365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snRNP-U1-70K-RA | 197..1540 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:40 Download gff for
BO10365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6970117..6971462 | 17..1362 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:51 Download gff for
BO10365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6970117..6971462 | 17..1362 | 99 | | Minus |
BO10365.pep Sequence
Translation from 16 to 1378
> BO10365.pep
MTQYLPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDP
KDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDP
FRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEY
EHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRR
GGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRG
FGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYD
EFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRER
GTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDED
EEKYRPPPAHHNMFSVPPPPILGRGNASTNPNPDNGQQSSGDPSWWRQAS
FLDH
BO10365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snRNP-U1-70K-PC | 448 | CG8749-PC | 1..448 | 1..448 | 2378 | 100 | Plus |
| snRNP-U1-70K-PA | 448 | CG8749-PA | 1..448 | 1..448 | 2378 | 100 | Plus |
| CG5808-PA | 653 | CG5808-PA | 238..513 | 100..367 | 245 | 28.3 | Plus |
| CG6227-PA | 1224 | CG6227-PA | 3..149 | 208..350 | 209 | 38 | Plus |
| CG2839-PA | 826 | CG2839-PA | 530..697 | 212..376 | 203 | 30.4 | Plus |
