Clone BO10366 Report

Search the DGRC for BO10366

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptsea-RA
Protein status:BO10366.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO10366.3prime Sequence

916 bp (823 high quality bases) assembled on 2006-04-19

> BO10366.3prime
ATGGTCTAGAAAGCTTGCCACCCACACCTTGTTGAACAGATCCATGAAGG
AGTCGTAGATCATAAAGGTGATGGCCACATCCAGGCACACACGACCTAAT
CTTGGCACGGTGCCCTTGTAGAAGGCGGCGGGACCTTCGTTCTTCAAGAT
CTCCACCGCACAGTGGGCAGTGTTCTTGTATTTCGATGCTTCCAGACCCT
GCATCCTCGTCTTGACCACATCCAGCGGCGTATTACCGAACACAGAGGCT
GCTCCGGCGATAGCTCCAAACACTCCAACCACCAACTTGGGCACTGGCTT
CGTGTGATCGTCACCCTTGTACAAATCCTTAAGGGACTCCAGTACGAAGA
AGCGAATGGCCTGGTTGGAGCCCTGTTTCAGAATGGTGGGCGTTAGGCCC
TTGTAGATACCAGAGATGCCCTCCGACTTGATGATTTGGCCAACGCCGTG
GGCGAATCCCCTGAACTTGGGATTGCCGCTGCGCTGATCGTTGATGAACT
TCACCTTGATGGTCTCCATCGGGGTCACTGCCACGATGGCCTCACATACG
CCAGCTCCTAAGCCGCAAAGCAACTTTCCGGAGTTGCTCAGTTGTCCTCG
GGAGTCCACGGCGTTCGATTTCAGGAATTCAAAAGCACCGAATCTCGCCG
CTGACTTAGGAATGCTGCCGTAGACGAGCACACTGAGACCTCGGTAGAGA
CCCAGGAATCCACGTTCTCCCACCGTCTTCTTAACGCAATCAAAGATGCC
GTTGTACTTCTTCGCCGCTCCCTTCTCGTCCAGCTGCAGTTGTGTCTTCA
CATACTCGGTGGGATAGGTGATGCAGATCTCGATGCCGCCCGTAATACCG
CCGGCGACGATGCCCTTAAGGCCCACCTGGGCGCTGTCCGCAGCCCGCGC
TCCGTGCTCCGTCATC

BO10366.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6782-PA 954 CG6782-RA 54..951 916..19 4415 99.6 Minus
CG6782-PC 954 CG6782-RC 54..951 916..19 4415 99.6 Minus
CG6782-PD 954 CG6782-RD 54..951 916..19 4415 99.6 Minus
CG6782-PE 954 CG6782-RE 54..951 916..19 4415 99.6 Minus
CG6783-PC 474 CG6783-RC 424..474 916..866 180 94.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 491..1388 916..19 4445 99.7 Minus
sea-RE 1444 CG6782-RE 275..1172 916..19 4445 99.7 Minus
sea-RD 1660 CG6782-RD 491..1388 916..19 4445 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560168..11560794 19..645 3135 100 Plus
3R 32079331 3R 11560852..11561124 644..916 1320 98.9 Plus
Blast to na_te.dros performed on 2015-02-10 18:51:16 has no hits.

BO10366.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:41 Download gff for BO10366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PA 54..954 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:54 Download gff for BO10366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PE 54..954 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:15:50 Download gff for BO10366.3prime
Subject Subject Range Query Range Percent Splice Strand
sea-RC 177..1079 12..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:57 Download gff for BO10366.3prime
Subject Subject Range Query Range Percent Splice Strand
sea-RD 491..1393 12..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:57 Download gff for BO10366.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11560163..11560792 12..643 99 <- Plus
3R 11560852..11561124 644..916 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:15:50 Download gff for BO10366.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385885..7386514 12..643 99 <- Plus
arm_3R 7386574..7386846 644..916 98   Plus

BO10366.5prime Sequence

907 bp (816 high quality bases) assembled on 2006-04-19

> BO10366.5prime
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
NGTCCCGCCGCCTTCTACAAGGGCACCGTGCCCAGATTAGGTCGTGTGTG
CCTGGAT

BO10366.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6782-PA 954 CG6782-RA 1..891 17..907 4411 99.7 Plus
CG6782-PC 954 CG6782-RC 1..891 17..907 4411 99.7 Plus
CG6782-PD 954 CG6782-RD 1..891 17..907 4411 99.7 Plus
CG6782-PE 954 CG6782-RE 1..891 17..907 4411 99.7 Plus
CG6783-PC 474 CG6783-RC 370..474 16..120 525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 430..1328 9..907 4439 99.6 Plus
sea-RE 1444 CG6782-RE 214..1112 9..907 4439 99.6 Plus
sea-RD 1660 CG6782-RD 430..1328 9..907 4439 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560228..11560794 907..341 2809 99.6 Minus
3R 32079331 3R 11560852..11561185 342..9 1640 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 11:01:57 has no hits.

BO10366.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:42 Download gff for BO10366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:55 Download gff for BO10366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PE 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:51 Download gff for BO10366.5prime
Subject Subject Range Query Range Percent Splice Strand
sea-RC 116..1014 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:07 Download gff for BO10366.5prime
Subject Subject Range Query Range Percent Splice Strand
sea-RD 430..1328 9..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:07 Download gff for BO10366.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11560228..11560792 343..907 99 <- Minus
3R 11560852..11561185 9..342 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:51 Download gff for BO10366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385950..7386514 343..907 99 <- Minus
arm_3R 7386574..7386907 9..342 99   Minus

BO10366.complete Sequence

985 bp assembled on 2007-10-17

GenBank Submission: FJ631723

> BO10366.complete
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGCCATCACCTTTATGATCTACGACTCCTTCATGGATCTGT
TCAACAAGGTGTGGGTGGCAAGCTTTCTAGACCAT

BO10366.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
sea-RE 954 CG6782-PE 1..951 17..967 4755 100 Plus
sea-RD 954 CG6782-PD 1..951 17..967 4755 100 Plus
sea-RC 954 CG6782-PC 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 430..1388 9..967 4765 99.8 Plus
sea-RE 1444 CG6782-RE 214..1172 9..967 4765 99.8 Plus
sea-RD 1660 CG6782-RD 430..1388 9..967 4765 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560168..11560794 967..341 3135 100 Minus
3R 32079331 3R 11560852..11561185 342..9 1640 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 07:10:57 has no hits.

BO10366.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:05 Download gff for BO10366.complete
Subject Subject Range Query Range Percent Splice Strand
CG6782-RD 1..954 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:32 Download gff for BO10366.complete
Subject Subject Range Query Range Percent Splice Strand
CG6782-RD 425..1388 9..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:56 Download gff for BO10366.complete
Subject Subject Range Query Range Percent Splice Strand
sea-RC 124..1074 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:32 Download gff for BO10366.complete
Subject Subject Range Query Range Percent Splice Strand
CG6782-RD 433..1383 17..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:04 Download gff for BO10366.complete
Subject Subject Range Query Range Percent Splice Strand
sea-RD 438..1388 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:04 Download gff for BO10366.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11560166..11560792 343..969 99 <- Minus
3R 11560852..11561177 17..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:56 Download gff for BO10366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385888..7386514 343..969 99 <- Minus
arm_3R 7386574..7386899 17..342 100   Minus

BO10366.pep Sequence

Translation from 16 to 985

> BO10366.pep
MDRSAFASLVSPYRRRPWMTEHGAAAADSGQVGLKGIVAGGITGGIEICI
TYPTEYVKTQLQLDEKGAAKKYNGIFDCVKKTVGERGFLGLYRGLSVLVY
GSIPKSAARFGAFEFLKSNAVDSRGQLSNSGKLLCGLGAGVCEAIVAVTP
METIKVKFINDQRSGNPKFRGFAHGVGQIIKSEGISGIYKGLTPTILKQG
SNQAIRFFVLESLKDLYKGDDHTKPVPKLVVGVFGAIAGAASVFGNTPLD
VVKTRMQGLEASKYKNTAHCAVEILKNEGPAAFYKGTVPRLGRVCLDVAI
TFMIYDSFMDLFNKVWVASFLDH

BO10366.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
sea-PE 317 CG6782-PE 1..317 1..317 1637 100 Plus
sea-PD 317 CG6782-PD 1..317 1..317 1637 100 Plus
sea-PC 317 CG6782-PC 1..317 1..317 1637 100 Plus
sea-PA 317 CG6782-PA 1..317 1..317 1637 100 Plus
GC1-PB 321 CG18347-PB 22..293 34..291 312 30.8 Plus