Clone Sequence Records
BO10366.3prime Sequence
916 bp (823 high quality bases) assembled on 2006-04-19
> BO10366.3prime
ATGGTCTAGAAAGCTTGCCACCCACACCTTGTTGAACAGATCCATGAAGG
AGTCGTAGATCATAAAGGTGATGGCCACATCCAGGCACACACGACCTAAT
CTTGGCACGGTGCCCTTGTAGAAGGCGGCGGGACCTTCGTTCTTCAAGAT
CTCCACCGCACAGTGGGCAGTGTTCTTGTATTTCGATGCTTCCAGACCCT
GCATCCTCGTCTTGACCACATCCAGCGGCGTATTACCGAACACAGAGGCT
GCTCCGGCGATAGCTCCAAACACTCCAACCACCAACTTGGGCACTGGCTT
CGTGTGATCGTCACCCTTGTACAAATCCTTAAGGGACTCCAGTACGAAGA
AGCGAATGGCCTGGTTGGAGCCCTGTTTCAGAATGGTGGGCGTTAGGCCC
TTGTAGATACCAGAGATGCCCTCCGACTTGATGATTTGGCCAACGCCGTG
GGCGAATCCCCTGAACTTGGGATTGCCGCTGCGCTGATCGTTGATGAACT
TCACCTTGATGGTCTCCATCGGGGTCACTGCCACGATGGCCTCACATACG
CCAGCTCCTAAGCCGCAAAGCAACTTTCCGGAGTTGCTCAGTTGTCCTCG
GGAGTCCACGGCGTTCGATTTCAGGAATTCAAAAGCACCGAATCTCGCCG
CTGACTTAGGAATGCTGCCGTAGACGAGCACACTGAGACCTCGGTAGAGA
CCCAGGAATCCACGTTCTCCCACCGTCTTCTTAACGCAATCAAAGATGCC
GTTGTACTTCTTCGCCGCTCCCTTCTCGTCCAGCTGCAGTTGTGTCTTCA
CATACTCGGTGGGATAGGTGATGCAGATCTCGATGCCGCCCGTAATACCG
CCGGCGACGATGCCCTTAAGGCCCACCTGGGCGCTGTCCGCAGCCCGCGC
TCCGTGCTCCGTCATC
BO10366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6782-PA | 954 | CG6782-RA | 54..951 | 916..19 | 4415 | 99.6 | Minus |
CG6782-PC | 954 | CG6782-RC | 54..951 | 916..19 | 4415 | 99.6 | Minus |
CG6782-PD | 954 | CG6782-RD | 54..951 | 916..19 | 4415 | 99.6 | Minus |
CG6782-PE | 954 | CG6782-RE | 54..951 | 916..19 | 4415 | 99.6 | Minus |
CG6783-PC | 474 | CG6783-RC | 424..474 | 916..866 | 180 | 94.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 491..1388 | 916..19 | 4445 | 99.7 | Minus |
sea-RE | 1444 | CG6782-RE | 275..1172 | 916..19 | 4445 | 99.7 | Minus |
sea-RD | 1660 | CG6782-RD | 491..1388 | 916..19 | 4445 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560168..11560794 | 19..645 | 3135 | 100 | Plus |
3R | 32079331 | 3R | 11560852..11561124 | 644..916 | 1320 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:51:16 has no hits.
BO10366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:41 Download gff for
BO10366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PA | 54..954 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:54 Download gff for
BO10366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PE | 54..954 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:15:50 Download gff for
BO10366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 177..1079 | 12..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:57 Download gff for
BO10366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 491..1393 | 12..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:57 Download gff for
BO10366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560163..11560792 | 12..643 | 99 | <- | Plus |
3R | 11560852..11561124 | 644..916 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:15:50 Download gff for
BO10366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385885..7386514 | 12..643 | 99 | <- | Plus |
arm_3R | 7386574..7386846 | 644..916 | 98 | | Plus |
BO10366.5prime Sequence
907 bp (816 high quality bases) assembled on 2006-04-19
> BO10366.5prime
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
NGTCCCGCCGCCTTCTACAAGGGCACCGTGCCCAGATTAGGTCGTGTGTG
CCTGGAT
BO10366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6782-PA | 954 | CG6782-RA | 1..891 | 17..907 | 4411 | 99.7 | Plus |
CG6782-PC | 954 | CG6782-RC | 1..891 | 17..907 | 4411 | 99.7 | Plus |
CG6782-PD | 954 | CG6782-RD | 1..891 | 17..907 | 4411 | 99.7 | Plus |
CG6782-PE | 954 | CG6782-RE | 1..891 | 17..907 | 4411 | 99.7 | Plus |
CG6783-PC | 474 | CG6783-RC | 370..474 | 16..120 | 525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 430..1328 | 9..907 | 4439 | 99.6 | Plus |
sea-RE | 1444 | CG6782-RE | 214..1112 | 9..907 | 4439 | 99.6 | Plus |
sea-RD | 1660 | CG6782-RD | 430..1328 | 9..907 | 4439 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560228..11560794 | 907..341 | 2809 | 99.6 | Minus |
3R | 32079331 | 3R | 11560852..11561185 | 342..9 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:57 has no hits.
BO10366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:42 Download gff for
BO10366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:50:55 Download gff for
BO10366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PE | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:51 Download gff for
BO10366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 116..1014 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:07 Download gff for
BO10366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 430..1328 | 9..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:07 Download gff for
BO10366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560228..11560792 | 343..907 | 99 | <- | Minus |
3R | 11560852..11561185 | 9..342 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:51 Download gff for
BO10366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385950..7386514 | 343..907 | 99 | <- | Minus |
arm_3R | 7386574..7386907 | 9..342 | 99 | | Minus |
BO10366.complete Sequence
985 bp assembled on 2007-10-17
GenBank Submission: FJ631723
> BO10366.complete
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGCCATCACCTTTATGATCTACGACTCCTTCATGGATCTGT
TCAACAAGGTGTGGGTGGCAAGCTTTCTAGACCAT
BO10366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sea-RE | 954 | CG6782-PE | 1..951 | 17..967 | 4755 | 100 | Plus |
sea-RD | 954 | CG6782-PD | 1..951 | 17..967 | 4755 | 100 | Plus |
sea-RC | 954 | CG6782-PC | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 430..1388 | 9..967 | 4765 | 99.8 | Plus |
sea-RE | 1444 | CG6782-RE | 214..1172 | 9..967 | 4765 | 99.8 | Plus |
sea-RD | 1660 | CG6782-RD | 430..1388 | 9..967 | 4765 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560168..11560794 | 967..341 | 3135 | 100 | Minus |
3R | 32079331 | 3R | 11560852..11561185 | 342..9 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:10:57 has no hits.
BO10366.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:05 Download gff for
BO10366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-RD | 1..954 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:32 Download gff for
BO10366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-RD | 425..1388 | 9..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:56 Download gff for
BO10366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 124..1074 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:32 Download gff for
BO10366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-RD | 433..1383 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:04 Download gff for
BO10366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 438..1388 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:04 Download gff for
BO10366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560166..11560792 | 343..969 | 99 | <- | Minus |
3R | 11560852..11561177 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:56 Download gff for
BO10366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385888..7386514 | 343..969 | 99 | <- | Minus |
arm_3R | 7386574..7386899 | 17..342 | 100 | | Minus |
BO10366.pep Sequence
Translation from 16 to 985
> BO10366.pep
MDRSAFASLVSPYRRRPWMTEHGAAAADSGQVGLKGIVAGGITGGIEICI
TYPTEYVKTQLQLDEKGAAKKYNGIFDCVKKTVGERGFLGLYRGLSVLVY
GSIPKSAARFGAFEFLKSNAVDSRGQLSNSGKLLCGLGAGVCEAIVAVTP
METIKVKFINDQRSGNPKFRGFAHGVGQIIKSEGISGIYKGLTPTILKQG
SNQAIRFFVLESLKDLYKGDDHTKPVPKLVVGVFGAIAGAASVFGNTPLD
VVKTRMQGLEASKYKNTAHCAVEILKNEGPAAFYKGTVPRLGRVCLDVAI
TFMIYDSFMDLFNKVWVASFLDH
BO10366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sea-PE | 317 | CG6782-PE | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PD | 317 | CG6782-PD | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PC | 317 | CG6782-PC | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PA | 317 | CG6782-PA | 1..317 | 1..317 | 1637 | 100 | Plus |
GC1-PB | 321 | CG18347-PB | 22..293 | 34..291 | 312 | 30.8 | Plus |