Clone BO10371 Report

Search the DGRC for BO10371

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG12237-RA
Protein status:BO10371.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO10371.3prime Sequence

950 bp (838 high quality bases) assembled on 2006-04-19

> BO10371.3prime
ATGGTCTAGAAAGCTTGCGTTGGGCGACTTGGTCGGCCCGGCAACTGCCG
ATGCCCGACGTGCCACCTCCGGTACTTTGCCATCCGTATCCGCATCCTGA
TCCGGCTGATCCCCATCGCCCTGCACCTGGGGGGTCTTCAGCTGCGGCAG
GGCCAGCATCTGGTCCATCAGATCGAAGCCGCTCTTCCAGATCAGCAGCT
GGGCGCGCAGCTTCAATTTGCTGCGATTGCGGAGCAGGTGCTTCTCCATT
GCGAACCCCTTGCGGGCGCAGGCAAAGTCGCACGCCCGCTGCCGCAGCAC
GGGGCAGATGTCGTTGTTGCCGTCGCCCACATAGAAGACGTGGTCATAGC
GTATGCTGCGCCGCAGGTCCTGCTCGATGACAAAGTGCTCCAGCACGCGG
CCCTTGCACAAATTGCTGGCGCTCAGCTTGCAATCCGACTGCTGGTGGTG
GGCGCGGACCATAAGCCGTCCGGAGGCATCGAATTCCGCCGGATTGGTAA
AGATGGCCACAAAGCAATCGGCCAAGTTATGTGCCCGCAGCCACTCGTCG
ATAAAGACGCTGTTCGAGTCACTGATGATGATCAGGTCGTAGTGCAGCCG
CTTGGCCAGATGCTTGATCAGGCGCACGAATCCGGGCACCTCGGGTATGC
CACGAATGGTGTCCCTAATGCGCGCCTCCGACACCTGTTGCTCGTGCAGC
AAGCGAAACACCTCGGCCATGTACTCCGTCCAGCAGTCGTTTTCAACCAG
CTCGTTGACCTTGGCGCTCGTCACCTCCGTGGGCAGCAGGTCGCGCACCA
CGGTGTCCGTGTTCTGGGAAACGATCGTGTGGTCGAAGTCGAAGGCCGCC
AGTCGACGGCGCTGCTGTTTCCTTAGCTGCAGCTGGCCACGGCCGCGGCC
ACTGCGGCGGGTGACTGCTTCTGGTTCGAGGACATGTCGACTGATAACTT

BO10371.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-PA 921 CG12237-RA 60..918 877..19 4295 100 Minus
CG12237-PA 921 CG12237-RA 1..59 935..877 270 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-RA 1679 CG12237-RA 173..1090 935..19 4550 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19641780..19642697 19..935 4525 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:25:57 has no hits.

BO10371.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:52 Download gff for BO10371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-PA 1..921 15..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:07 Download gff for BO10371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-PA 1..921 15..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:33 Download gff for BO10371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 167..1094 14..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:22:35 Download gff for BO10371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 167..1094 14..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:22:35 Download gff for BO10371.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19641776..19642701 14..943 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:33 Download gff for BO10371.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19535809..19536734 14..943 99   Plus

BO10371.5prime Sequence

877 bp (796 high quality bases) assembled on 2006-04-19

> BO10371.5prime
GAAGTTATCAGTCGACATGTCCTCGAACCAGGAGCAGTCACCCGCCGCAG
TGGCCGCGGCCGTGGCCAGCTGCAGGCTAAGGAAACAGCAGCGCCGTCGA
CTGGCGGCCTTCGACTTCGACCACACGATCGTTTCCCAGAACACGGACAC
CGTGGTGCGCGACCTGCTGCCCACGGAGGTGACGAGCGCCAAGGTCAACG
AGCTGGTTGAAAACGACTGCTGGACGGAGTACATGGCCGAGGTGTTTCGC
TTGCTGCACGAGCAACAGGTGTCGGAGGCGCGCATTAGGGACACCATTCG
TGGCATACCCGAGGTGCCCGGATTCGTGCGCCTGATCAAGCATCTGGCCA
AGCGGCTGCACTACGACCTGATCATCATCAGTGACTCGAACAGCGTCTTT
ATCGACGAGTGGCTGCGGGCACATAACTTGGCCGATTGCTTTGTGGCCAT
CTTTACCAATCCGGCGGAATTCGATGCCTCCGGACGGCTTATGGTCCGCG
CCCACCACCAGCAGTCGGATTGCAAGCTGAGCGCCAGCAATTTGTGCAAG
GGCCGCGTGCTGGAGCACTTTGTCATCGAGCAGGACCTGCGGCGCAGCAT
ACGCTATGACCACGTCTTCTATGTGGGCGACGGCAACAACGACATCTGCC
CCGTGCTGCGGCAGCGGGCGTGCGACTTTGCCTGCGCCCGCAAGGGGTTC
GCAATGGAGAAGCACCTGCTCCGCAATCGCAGCAAATTGAAGCTGCGCGC
CCAGCTGCTGATCTGGAAGAGCGGCTTCGATCTGATGGACCAGATGCTGG
CCCTGCCGCAGCTGAAGACCCCCCAGGTGCAGGGCGATGGGGATCAGCCG
GATCAGGATGCGGATACGGATGGGCAA

BO10371.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-PA 921 CG12237-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-RA 1679 CG12237-RA 173..1029 17..873 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19641841..19642697 873..17 4285 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:37:41 has no hits.

BO10371.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:52 Download gff for BO10371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-PA 1..858 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:09 Download gff for BO10371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-PA 1..858 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:43:24 Download gff for BO10371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 167..1030 9..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:21 Download gff for BO10371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 167..1030 9..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:21 Download gff for BO10371.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19641840..19642701 9..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:43:24 Download gff for BO10371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19535873..19536734 9..875 99   Minus

BO10371.complete Sequence

952 bp (952 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631724

> BO10371.complete
GAAGTTATCAGTCGACATGTCCTCGAACCAGGAGCAGTCACCCGCCGCAG
TGGCCGCGGCCGTGGCCAGCTGCAGGCTAAGGAAACAGCAGCGCCGTCGA
CTGGCGGCCTTCGACTTCGACCACACGATCGTTTCCCAGAACACGGACAC
CGTGGTGCGCGACCTGCTGCCCACGGAGGTGACGAGCGCCAAGGTCAACG
AGCTGGTTGAAAACGACTGCTGGACGGAGTACATGGCCGAGGTGTTTCGC
TTGCTGCACGAGCAACAGGTGTCGGAGGCGCGCATTAGGGACACCATTCG
TGGCATACCCGAGGTGCCCGGATTCGTGCGCCTGATCAAGCATCTGGCCA
AGCGGCTGCACTACGACCTGATCATCATCAGTGACTCGAACAGCGTCTTT
ATCGACGAGTGGCTGCGGGCACATAACTTGGCCGATTGCTTTGTGGCCAT
CTTTACCAATCCGGCGGAATTCGATGCCTCCGGACGGCTTATGGTCCGCG
CCCACCACCAGCAGTCGGATTGCAAGCTGAGCGCCAGCAATTTGTGCAAG
GGCCGCGTGCTGGAGCACTTTGTCATCGAGCAGGACCTGCGGCGCAGCAT
ACGCTATGACCACGTCTTCTATGTGGGCGACGGCAACAACGACATCTGCC
CCGTGCTGCGGCAGCGGGCGTGCGACTTTGCCTGCGCCCGCAAGGGGTTC
GCAATGGAGAAGCACCTGCTCCGCAATCGCAGCAAATTGAAGCTGCGCGC
CCAGCTGCTGATCTGGAAGAGCGGCTTCGATCTGATGGACCAGATGCTGG
CCCTGCCGCAGCTGAAGACCCCCCAGGTGCAGGGCGATGGGGATCAGCCG
GATCAGGATGCGGATACGGATGGCAAAGTACCGGAGGTGGCACGTCGGGC
ATCGGCAGTTGCCGGGCCGACCAAGTCGCCCAACGCAAGCTTTCTAGACC
AT

BO10371.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-RA 921 CG12237-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-RA 1679 CG12237-RA 173..1090 17..934 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19641780..19642697 934..17 4590 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:38:31 has no hits.

BO10371.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:33 Download gff for BO10371.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 1..921 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:03 Download gff for BO10371.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 164..1091 9..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:47 Download gff for BO10371.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 173..1090 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:33 Download gff for BO10371.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 164..1091 9..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:24 Download gff for BO10371.complete
Subject Subject Range Query Range Percent Splice Strand
CG12237-RA 173..1090 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:24 Download gff for BO10371.complete
Subject Subject Range Query Range Percent Splice Strand
X 19641778..19642697 17..936 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:47 Download gff for BO10371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19535811..19536730 17..936 99   Minus

BO10371.pep Sequence

Translation from 16 to 952

> BO10371.pep
MSSNQEQSPAAVAAAVASCRLRKQQRRRLAAFDFDHTIVSQNTDTVVRDL
LPTEVTSAKVNELVENDCWTEYMAEVFRLLHEQQVSEARIRDTIRGIPEV
PGFVRLIKHLAKRLHYDLIIISDSNSVFIDEWLRAHNLADCFVAIFTNPA
EFDASGRLMVRAHHQQSDCKLSASNLCKGRVLEHFVIEQDLRRSIRYDHV
FYVGDGNNDICPVLRQRACDFACARKGFAMEKHLLRNRSKLKLRAQLLIW
KSGFDLMDQMLALPQLKTPQVQGDGDQPDQDADTDGKVPEVARRASAVAG
PTKSPNASFLDH

BO10371.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12237-PA 306 CG12237-PA 1..306 1..306 1588 100 Plus
CG14212-PA 262 CG14212-PA 30..257 27..261 394 37.1 Plus