Clone Sequence Records
BO10371.3prime Sequence
950 bp (838 high quality bases) assembled on 2006-04-19
> BO10371.3prime
ATGGTCTAGAAAGCTTGCGTTGGGCGACTTGGTCGGCCCGGCAACTGCCG
ATGCCCGACGTGCCACCTCCGGTACTTTGCCATCCGTATCCGCATCCTGA
TCCGGCTGATCCCCATCGCCCTGCACCTGGGGGGTCTTCAGCTGCGGCAG
GGCCAGCATCTGGTCCATCAGATCGAAGCCGCTCTTCCAGATCAGCAGCT
GGGCGCGCAGCTTCAATTTGCTGCGATTGCGGAGCAGGTGCTTCTCCATT
GCGAACCCCTTGCGGGCGCAGGCAAAGTCGCACGCCCGCTGCCGCAGCAC
GGGGCAGATGTCGTTGTTGCCGTCGCCCACATAGAAGACGTGGTCATAGC
GTATGCTGCGCCGCAGGTCCTGCTCGATGACAAAGTGCTCCAGCACGCGG
CCCTTGCACAAATTGCTGGCGCTCAGCTTGCAATCCGACTGCTGGTGGTG
GGCGCGGACCATAAGCCGTCCGGAGGCATCGAATTCCGCCGGATTGGTAA
AGATGGCCACAAAGCAATCGGCCAAGTTATGTGCCCGCAGCCACTCGTCG
ATAAAGACGCTGTTCGAGTCACTGATGATGATCAGGTCGTAGTGCAGCCG
CTTGGCCAGATGCTTGATCAGGCGCACGAATCCGGGCACCTCGGGTATGC
CACGAATGGTGTCCCTAATGCGCGCCTCCGACACCTGTTGCTCGTGCAGC
AAGCGAAACACCTCGGCCATGTACTCCGTCCAGCAGTCGTTTTCAACCAG
CTCGTTGACCTTGGCGCTCGTCACCTCCGTGGGCAGCAGGTCGCGCACCA
CGGTGTCCGTGTTCTGGGAAACGATCGTGTGGTCGAAGTCGAAGGCCGCC
AGTCGACGGCGCTGCTGTTTCCTTAGCTGCAGCTGGCCACGGCCGCGGCC
ACTGCGGCGGGTGACTGCTTCTGGTTCGAGGACATGTCGACTGATAACTT
BO10371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12237-PA | 921 | CG12237-RA | 60..918 | 877..19 | 4295 | 100 | Minus |
CG12237-PA | 921 | CG12237-RA | 1..59 | 935..877 | 270 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12237-RA | 1679 | CG12237-RA | 173..1090 | 935..19 | 4550 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19641780..19642697 | 19..935 | 4525 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:25:57 has no hits.
BO10371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:52 Download gff for
BO10371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-PA | 1..921 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:07 Download gff for
BO10371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-PA | 1..921 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:33 Download gff for
BO10371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 167..1094 | 14..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:22:35 Download gff for
BO10371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 167..1094 | 14..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:22:35 Download gff for
BO10371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19641776..19642701 | 14..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:33 Download gff for
BO10371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19535809..19536734 | 14..943 | 99 | | Plus |
BO10371.5prime Sequence
877 bp (796 high quality bases) assembled on 2006-04-19
> BO10371.5prime
GAAGTTATCAGTCGACATGTCCTCGAACCAGGAGCAGTCACCCGCCGCAG
TGGCCGCGGCCGTGGCCAGCTGCAGGCTAAGGAAACAGCAGCGCCGTCGA
CTGGCGGCCTTCGACTTCGACCACACGATCGTTTCCCAGAACACGGACAC
CGTGGTGCGCGACCTGCTGCCCACGGAGGTGACGAGCGCCAAGGTCAACG
AGCTGGTTGAAAACGACTGCTGGACGGAGTACATGGCCGAGGTGTTTCGC
TTGCTGCACGAGCAACAGGTGTCGGAGGCGCGCATTAGGGACACCATTCG
TGGCATACCCGAGGTGCCCGGATTCGTGCGCCTGATCAAGCATCTGGCCA
AGCGGCTGCACTACGACCTGATCATCATCAGTGACTCGAACAGCGTCTTT
ATCGACGAGTGGCTGCGGGCACATAACTTGGCCGATTGCTTTGTGGCCAT
CTTTACCAATCCGGCGGAATTCGATGCCTCCGGACGGCTTATGGTCCGCG
CCCACCACCAGCAGTCGGATTGCAAGCTGAGCGCCAGCAATTTGTGCAAG
GGCCGCGTGCTGGAGCACTTTGTCATCGAGCAGGACCTGCGGCGCAGCAT
ACGCTATGACCACGTCTTCTATGTGGGCGACGGCAACAACGACATCTGCC
CCGTGCTGCGGCAGCGGGCGTGCGACTTTGCCTGCGCCCGCAAGGGGTTC
GCAATGGAGAAGCACCTGCTCCGCAATCGCAGCAAATTGAAGCTGCGCGC
CCAGCTGCTGATCTGGAAGAGCGGCTTCGATCTGATGGACCAGATGCTGG
CCCTGCCGCAGCTGAAGACCCCCCAGGTGCAGGGCGATGGGGATCAGCCG
GATCAGGATGCGGATACGGATGGGCAA
BO10371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12237-PA | 921 | CG12237-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12237-RA | 1679 | CG12237-RA | 173..1029 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19641841..19642697 | 873..17 | 4285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:37:41 has no hits.
BO10371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:52 Download gff for
BO10371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-PA | 1..858 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:09 Download gff for
BO10371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-PA | 1..858 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:43:24 Download gff for
BO10371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 167..1030 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:21 Download gff for
BO10371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 167..1030 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:21 Download gff for
BO10371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19641840..19642701 | 9..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:43:24 Download gff for
BO10371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19535873..19536734 | 9..875 | 99 | | Minus |
BO10371.complete Sequence
952 bp (952 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631724
> BO10371.complete
GAAGTTATCAGTCGACATGTCCTCGAACCAGGAGCAGTCACCCGCCGCAG
TGGCCGCGGCCGTGGCCAGCTGCAGGCTAAGGAAACAGCAGCGCCGTCGA
CTGGCGGCCTTCGACTTCGACCACACGATCGTTTCCCAGAACACGGACAC
CGTGGTGCGCGACCTGCTGCCCACGGAGGTGACGAGCGCCAAGGTCAACG
AGCTGGTTGAAAACGACTGCTGGACGGAGTACATGGCCGAGGTGTTTCGC
TTGCTGCACGAGCAACAGGTGTCGGAGGCGCGCATTAGGGACACCATTCG
TGGCATACCCGAGGTGCCCGGATTCGTGCGCCTGATCAAGCATCTGGCCA
AGCGGCTGCACTACGACCTGATCATCATCAGTGACTCGAACAGCGTCTTT
ATCGACGAGTGGCTGCGGGCACATAACTTGGCCGATTGCTTTGTGGCCAT
CTTTACCAATCCGGCGGAATTCGATGCCTCCGGACGGCTTATGGTCCGCG
CCCACCACCAGCAGTCGGATTGCAAGCTGAGCGCCAGCAATTTGTGCAAG
GGCCGCGTGCTGGAGCACTTTGTCATCGAGCAGGACCTGCGGCGCAGCAT
ACGCTATGACCACGTCTTCTATGTGGGCGACGGCAACAACGACATCTGCC
CCGTGCTGCGGCAGCGGGCGTGCGACTTTGCCTGCGCCCGCAAGGGGTTC
GCAATGGAGAAGCACCTGCTCCGCAATCGCAGCAAATTGAAGCTGCGCGC
CCAGCTGCTGATCTGGAAGAGCGGCTTCGATCTGATGGACCAGATGCTGG
CCCTGCCGCAGCTGAAGACCCCCCAGGTGCAGGGCGATGGGGATCAGCCG
GATCAGGATGCGGATACGGATGGCAAAGTACCGGAGGTGGCACGTCGGGC
ATCGGCAGTTGCCGGGCCGACCAAGTCGCCCAACGCAAGCTTTCTAGACC
AT
BO10371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12237-RA | 921 | CG12237-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12237-RA | 1679 | CG12237-RA | 173..1090 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19641780..19642697 | 934..17 | 4590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:38:31 has no hits.
BO10371.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:33 Download gff for
BO10371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 1..921 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:03 Download gff for
BO10371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 164..1091 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:47 Download gff for
BO10371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 173..1090 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:33 Download gff for
BO10371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 164..1091 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:24 Download gff for
BO10371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12237-RA | 173..1090 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:24 Download gff for
BO10371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19641778..19642697 | 17..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:47 Download gff for
BO10371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19535811..19536730 | 17..936 | 99 | | Minus |
BO10371.pep Sequence
Translation from 16 to 952
> BO10371.pep
MSSNQEQSPAAVAAAVASCRLRKQQRRRLAAFDFDHTIVSQNTDTVVRDL
LPTEVTSAKVNELVENDCWTEYMAEVFRLLHEQQVSEARIRDTIRGIPEV
PGFVRLIKHLAKRLHYDLIIISDSNSVFIDEWLRAHNLADCFVAIFTNPA
EFDASGRLMVRAHHQQSDCKLSASNLCKGRVLEHFVIEQDLRRSIRYDHV
FYVGDGNNDICPVLRQRACDFACARKGFAMEKHLLRNRSKLKLRAQLLIW
KSGFDLMDQMLALPQLKTPQVQGDGDQPDQDADTDGKVPEVARRASAVAG
PTKSPNASFLDH
BO10371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12237-PA | 306 | CG12237-PA | 1..306 | 1..306 | 1588 | 100 | Plus |
CG14212-PA | 262 | CG14212-PA | 30..257 | 27..261 | 394 | 37.1 | Plus |