Clone BO10372 Report

Search the DGRC for BO10372

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG9186-RA
Protein status:BO10372.pep: Imported from assembly
Sequenced Size:955

Clone Sequence Records

BO10372.3prime Sequence

905 bp (805 high quality bases) assembled on 2006-04-19

> BO10372.3prime
ATGGTCTAGAAAGCTTGCTACACGTCTGTGCTGCTGGATCATGTCTCTTA
CGATTACAGCCATAGGCTGCGAGTGGCGCAGGACGAAAGCGTGGTCGATC
TTCTTGGTGTCCAGCTGGGCGTCCACCTTGGGGTAGTCTTTTTTGAGCTG
GTCATAGTAGGAGATTGGTACCCATCCGTCGGTAGTGCCGTAGTAAAACT
TGAGGAGGTCCAGGTTCTGCTCTACAATCTCCCTTTGAATCCCGCGAACC
CTGGCCATCTCATCGTCGGCCAGGAAGACCACCTTCTCCGCTACCGATGG
TTTGGAGTACTTTAGGGCGGTGCCCAGAAACTGTCGTGGAATGGAGAAAA
TCAAGAAGTAGATCTGTATCAGCATCAGGCGCAACCACACGGGCAGAAAG
TTGAAGAAGCTGAAGAAAATGTAGCCAAACACGGAGTACAGGGGCATGGC
CACCTTGGTGAACACCCATCCATTGGGCGACTCCATCATCCGCTCGACGG
TGGGGAACAGCATATAGCACTTTTGGATGCGACTCCGTATCCGCTCGTTT
TCCAGCAGCTGCAGGATCATCCACGCTCCGATGGAGTGCCCAATCAAGTG
GATCTTGACATCACTTGGCACGTATTTCTCGATGAAGGCGATTTTATGCC
GGATTTGTCCGTCCAAATTGAAGAGCTCCTCGTTGCCGCTGAGTTGAGGA
ACCTCCCGAATACTGGCCTCTGGCGGATCATCATGGCCAGCGTGCCCTAT
CACCCAAACTGGAAGATCGCCCAACTCCTTTTGCAAAGTGCCTGCGAACT
CTGTGTAGAAACCTGGCAAACCGGGATTGCCAGTTATGCAGATGACGATC
TCCTTCTCGGTTATGGTCTCCCTCATCCACCTGCCCCATGTGAATATGTG
GGTGG

BO10372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PB 924 CG9186-RB 69..920 871..20 4260 100 Minus
CG9186-PA 924 CG9186-RA 69..920 871..20 4260 100 Minus
CG9186-PB 924 CG9186-RB 35..65 905..875 155 100 Minus
CG9186-PA 924 CG9186-RA 35..65 905..875 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 1428 CG9186-RA 328..1213 905..20 4385 99.8 Minus
CG9186-RB 1466 CG9186-RB 366..1251 905..20 4385 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1311934..1312662 20..748 3645 100 Plus
3L 28110227 3L 1312719..1312878 746..905 755 98.1 Plus
Blast to na_te.dros performed on 2015-02-01 09:55:12 has no hits.

BO10372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:53 Download gff for BO10372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 35..924 16..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:10 Download gff for BO10372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 35..924 16..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:27 Download gff for BO10372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 366..1257 14..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:10 Download gff for BO10372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 366..1257 14..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:10 Download gff for BO10372.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1311928..1312660 14..746 99 <- Plus
3L 1312720..1312878 747..905 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:27 Download gff for BO10372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1311928..1312660 14..746 99 <- Plus
arm_3L 1312720..1312878 747..905 98   Plus

BO10372.5prime Sequence

950 bp (851 high quality bases) assembled on 2006-04-19

> BO10372.5prime
GAAGTTATCAGTCGACATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGATGGGTACCAATCTCCTACT
ATGACCAGCTCAAAAAAGACTACCCCAAGGTGGACGCCCAGCTGGACACC
AAGAAGATCGACCACGCTTTCGTCCTGCGCCACTCGCAGCCTATGGGCTG
TATCGTAAGAGACATGATCCAGCAGCACAGACGTGTAGCAAGCTTTCTAG

BO10372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PB 924 CG9186-RB 1..880 17..896 4400 100 Plus
CG9186-PA 924 CG9186-RA 1..880 17..896 4400 100 Plus
CG9186-PB 924 CG9186-RB 886..920 902..936 175 100 Plus
CG9186-PA 924 CG9186-RA 886..920 902..936 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 1428 CG9186-RA 294..1213 17..936 4555 99.8 Plus
CG9186-RB 1466 CG9186-RB 332..1251 17..936 4555 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1311934..1312662 936..208 3570 99.3 Minus
3L 28110227 3L 1312719..1312912 210..17 970 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:28:27 has no hits.

BO10372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:54 Download gff for BO10372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:11 Download gff for BO10372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:34 Download gff for BO10372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1257 17..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:42 Download gff for BO10372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1257 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:42 Download gff for BO10372.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1311928..1312660 210..942 99 <- Minus
3L 1312720..1312912 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:34 Download gff for BO10372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1311928..1312660 210..942 99 <- Minus
arm_3L 1312720..1312912 17..209 100   Minus

BO10372.complete Sequence

955 bp assembled on 2008-08-15

GenBank Submission: FJ631725

> BO10372.complete
GAAGTTATCAGTCGACATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGATGGGTACCAATCTCCTACT
ATGACCAGCTCAAAAAAGACTACCCCAAGGTGGACGCCCAGCTGGACACC
AAGAAGATCGACCACGCTTTCGTCCTGCGCCACTCGCAGCCTATGGCTGT
AATCGTAAGAGACATGATCCAGCAGCACAGACGTGTAGCAAGCTTTCTAG
ACCAT

BO10372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 924 CG9186-PA 1..920 17..936 4600 100 Plus
CG9186-RB 924 CG9186-PB 1..920 17..936 4600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-RA 1428 CG9186-RA 294..1213 17..936 4600 100 Plus
CG9186-RB 1466 CG9186-RB 332..1251 17..936 4600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1311934..1312662 936..208 3645 100 Minus
3L 28110227 3L 1312719..1312912 210..17 970 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:46:14 has no hits.

BO10372.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:37 Download gff for BO10372.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RA 292..1217 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:43 Download gff for BO10372.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1251 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:24 Download gff for BO10372.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RA 292..1211 17..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:07 Download gff for BO10372.complete
Subject Subject Range Query Range Percent Splice Strand
CG9186-RB 332..1251 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:07 Download gff for BO10372.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1311930..1312660 210..939 99 <- Minus
3L 1312720..1312912 17..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:43 Download gff for BO10372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1311930..1312660 210..939 99 <- Minus
arm_3L 1312720..1312912 17..209 100   Minus

BO10372.pep Sequence

Translation from 16 to 955

> BO10372.pep
MQEAYVNINSIPTHIFTWGRWIEETITEKEIVICITGNPGLPGFYTEFAG
TLQKELGDLPVWVIGHAGHDDPPEASIREVPQLSGNEELFNLDGQIRHKI
AFIEKYVPSDVKIHLIGHSIGAWMILQLLENERIRSRIQKCYMLFPTVER
MMESPNGWVFTKVAMPLYSVFGYIFFSFFNFLPVWLRLMLIQIYFLIFSI
PRQFLGTALKYSKPSVAEKVVFLADDEMARVRGIQREIVEQNLDLLKFYY
GTTDGWVPISYYDQLKKDYPKVDAQLDTKKIDHAFVLRHSQPMAVIVRDM
IQQHRRVASFLDH

BO10372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9186-PA 307 CG9186-PA 1..307 1..307 1625 100 Plus
CG9186-PB 307 CG9186-PB 1..307 1..307 1625 100 Plus