Clone Sequence Records
BO10372.3prime Sequence
905 bp (805 high quality bases) assembled on 2006-04-19
> BO10372.3prime
ATGGTCTAGAAAGCTTGCTACACGTCTGTGCTGCTGGATCATGTCTCTTA
CGATTACAGCCATAGGCTGCGAGTGGCGCAGGACGAAAGCGTGGTCGATC
TTCTTGGTGTCCAGCTGGGCGTCCACCTTGGGGTAGTCTTTTTTGAGCTG
GTCATAGTAGGAGATTGGTACCCATCCGTCGGTAGTGCCGTAGTAAAACT
TGAGGAGGTCCAGGTTCTGCTCTACAATCTCCCTTTGAATCCCGCGAACC
CTGGCCATCTCATCGTCGGCCAGGAAGACCACCTTCTCCGCTACCGATGG
TTTGGAGTACTTTAGGGCGGTGCCCAGAAACTGTCGTGGAATGGAGAAAA
TCAAGAAGTAGATCTGTATCAGCATCAGGCGCAACCACACGGGCAGAAAG
TTGAAGAAGCTGAAGAAAATGTAGCCAAACACGGAGTACAGGGGCATGGC
CACCTTGGTGAACACCCATCCATTGGGCGACTCCATCATCCGCTCGACGG
TGGGGAACAGCATATAGCACTTTTGGATGCGACTCCGTATCCGCTCGTTT
TCCAGCAGCTGCAGGATCATCCACGCTCCGATGGAGTGCCCAATCAAGTG
GATCTTGACATCACTTGGCACGTATTTCTCGATGAAGGCGATTTTATGCC
GGATTTGTCCGTCCAAATTGAAGAGCTCCTCGTTGCCGCTGAGTTGAGGA
ACCTCCCGAATACTGGCCTCTGGCGGATCATCATGGCCAGCGTGCCCTAT
CACCCAAACTGGAAGATCGCCCAACTCCTTTTGCAAAGTGCCTGCGAACT
CTGTGTAGAAACCTGGCAAACCGGGATTGCCAGTTATGCAGATGACGATC
TCCTTCTCGGTTATGGTCTCCCTCATCCACCTGCCCCATGTGAATATGTG
GGTGG
BO10372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-PB | 924 | CG9186-RB | 69..920 | 871..20 | 4260 | 100 | Minus |
CG9186-PA | 924 | CG9186-RA | 69..920 | 871..20 | 4260 | 100 | Minus |
CG9186-PB | 924 | CG9186-RB | 35..65 | 905..875 | 155 | 100 | Minus |
CG9186-PA | 924 | CG9186-RA | 35..65 | 905..875 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 1428 | CG9186-RA | 328..1213 | 905..20 | 4385 | 99.8 | Minus |
CG9186-RB | 1466 | CG9186-RB | 366..1251 | 905..20 | 4385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1311934..1312662 | 20..748 | 3645 | 100 | Plus |
3L | 28110227 | 3L | 1312719..1312878 | 746..905 | 755 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:55:12 has no hits.
BO10372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:53 Download gff for
BO10372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 35..924 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:10 Download gff for
BO10372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 35..924 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:27 Download gff for
BO10372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 366..1257 | 14..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:10 Download gff for
BO10372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 366..1257 | 14..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:10 Download gff for
BO10372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1311928..1312660 | 14..746 | 99 | <- | Plus |
3L | 1312720..1312878 | 747..905 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:27 Download gff for
BO10372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1311928..1312660 | 14..746 | 99 | <- | Plus |
arm_3L | 1312720..1312878 | 747..905 | 98 | | Plus |
BO10372.5prime Sequence
950 bp (851 high quality bases) assembled on 2006-04-19
> BO10372.5prime
GAAGTTATCAGTCGACATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGATGGGTACCAATCTCCTACT
ATGACCAGCTCAAAAAAGACTACCCCAAGGTGGACGCCCAGCTGGACACC
AAGAAGATCGACCACGCTTTCGTCCTGCGCCACTCGCAGCCTATGGGCTG
TATCGTAAGAGACATGATCCAGCAGCACAGACGTGTAGCAAGCTTTCTAG
BO10372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-PB | 924 | CG9186-RB | 1..880 | 17..896 | 4400 | 100 | Plus |
CG9186-PA | 924 | CG9186-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
CG9186-PB | 924 | CG9186-RB | 886..920 | 902..936 | 175 | 100 | Plus |
CG9186-PA | 924 | CG9186-RA | 886..920 | 902..936 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 1428 | CG9186-RA | 294..1213 | 17..936 | 4555 | 99.8 | Plus |
CG9186-RB | 1466 | CG9186-RB | 332..1251 | 17..936 | 4555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1311934..1312662 | 936..208 | 3570 | 99.3 | Minus |
3L | 28110227 | 3L | 1312719..1312912 | 210..17 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:28:27 has no hits.
BO10372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:54 Download gff for
BO10372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:11 Download gff for
BO10372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:34 Download gff for
BO10372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1257 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:42 Download gff for
BO10372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1257 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:42 Download gff for
BO10372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1311928..1312660 | 210..942 | 99 | <- | Minus |
3L | 1312720..1312912 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:34 Download gff for
BO10372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1311928..1312660 | 210..942 | 99 | <- | Minus |
arm_3L | 1312720..1312912 | 17..209 | 100 | | Minus |
BO10372.complete Sequence
955 bp assembled on 2008-08-15
GenBank Submission: FJ631725
> BO10372.complete
GAAGTTATCAGTCGACATGCAGGAGGCCTACGTCAACATCAACTCCATTC
CCACCCACATATTCACATGGGGCAGGTGGATTGAGGAGACCATAACCGAG
AAGGAGATCGTCATCTGCATAACTGGCAATCCCGGTTTGCCAGGTTTCTA
CACAGAGTTCGCAGGCACTTTGCAAAAGGAGTTGGGCGATCTTCCAGTTT
GGGTGATAGGGCACGCTGGCCATGATGATCCGCCAGAGGCCAGTATTCGG
GAGGTTCCTCAACTCAGCGGCAACGAGGAGCTCTTCAATTTGGACGGACA
AATCCGGCATAAAATCGCCTTCATCGAGAAATACGTGCCAAGTGATGTCA
AGATCCACTTGATTGGGCACTCCATCGGAGCGTGGATGATCCTGCAGCTG
CTGGAAAACGAGCGGATACGGAGTCGCATCCAAAAGTGCTATATGCTGTT
CCCCACCGTCGAGCGGATGATGGAGTCGCCCAATGGATGGGTGTTCACCA
AGGTGGCCATGCCCCTGTACTCCGTGTTTGGCTACATTTTCTTCAGCTTC
TTCAACTTTCTGCCCGTGTGGTTGCGCCTGATGCTGATACAGATCTACTT
CTTGATTTTCTCCATTCCACGACAGTTTCTGGGCACCGCCCTAAAGTACT
CCAAACCATCGGTAGCGGAGAAGGTGGTCTTCCTGGCCGACGATGAGATG
GCCAGGGTTCGCGGGATTCAAAGGGAGATTGTAGAGCAGAACCTGGACCT
CCTCAAGTTTTACTACGGCACTACCGACGGATGGGTACCAATCTCCTACT
ATGACCAGCTCAAAAAAGACTACCCCAAGGTGGACGCCCAGCTGGACACC
AAGAAGATCGACCACGCTTTCGTCCTGCGCCACTCGCAGCCTATGGCTGT
AATCGTAAGAGACATGATCCAGCAGCACAGACGTGTAGCAAGCTTTCTAG
ACCAT
BO10372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 924 | CG9186-PA | 1..920 | 17..936 | 4600 | 100 | Plus |
CG9186-RB | 924 | CG9186-PB | 1..920 | 17..936 | 4600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-RA | 1428 | CG9186-RA | 294..1213 | 17..936 | 4600 | 100 | Plus |
CG9186-RB | 1466 | CG9186-RB | 332..1251 | 17..936 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1311934..1312662 | 936..208 | 3645 | 100 | Minus |
3L | 28110227 | 3L | 1312719..1312912 | 210..17 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:14 has no hits.
BO10372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:37 Download gff for
BO10372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RA | 292..1217 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:43 Download gff for
BO10372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1251 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:24 Download gff for
BO10372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RA | 292..1211 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:07 Download gff for
BO10372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9186-RB | 332..1251 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:07 Download gff for
BO10372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1311930..1312660 | 210..939 | 99 | <- | Minus |
3L | 1312720..1312912 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:43 Download gff for
BO10372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1311930..1312660 | 210..939 | 99 | <- | Minus |
arm_3L | 1312720..1312912 | 17..209 | 100 | | Minus |
BO10372.pep Sequence
Translation from 16 to 955
> BO10372.pep
MQEAYVNINSIPTHIFTWGRWIEETITEKEIVICITGNPGLPGFYTEFAG
TLQKELGDLPVWVIGHAGHDDPPEASIREVPQLSGNEELFNLDGQIRHKI
AFIEKYVPSDVKIHLIGHSIGAWMILQLLENERIRSRIQKCYMLFPTVER
MMESPNGWVFTKVAMPLYSVFGYIFFSFFNFLPVWLRLMLIQIYFLIFSI
PRQFLGTALKYSKPSVAEKVVFLADDEMARVRGIQREIVEQNLDLLKFYY
GTTDGWVPISYYDQLKKDYPKVDAQLDTKKIDHAFVLRHSQPMAVIVRDM
IQQHRRVASFLDH
BO10372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9186-PA | 307 | CG9186-PA | 1..307 | 1..307 | 1625 | 100 | Plus |
CG9186-PB | 307 | CG9186-PB | 1..307 | 1..307 | 1625 | 100 | Plus |