Clone BO10373 Report

Search the DGRC for BO10373

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG12104-RA
Protein status:BO10373.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO10373.3prime Sequence

782 bp (781 high quality bases) assembled on 2006-04-19

> BO10373.3prime
ATGGTCTAGAAAGCTTGCTGAGTTCATGGATATTACCCAGTGGTTGAATA
CATTCCGGCAGTGGATGACGACGCACTCGTTGCTGCAGTACTCGTCCTCC
CAGTCCGGATTTATGATAGCTGGCTTATTGCACTGTTCCCGTGTGCACTT
CTGCACCCTAGCCGCTTCGGTGAGGAGCTGTATCTGATCGGGCGGCGGCT
CCTGCTGGGCATCCACCGACTGTTGCAGATCCTCGACAGACTCCAATTTG
GTTGTGACTAGAGGAGGTGGCTGATTGGTAGCTACTGCTGGTGGGGCCTC
TGCCTCCGACGTACCCTCCGACTCGGACAGCTGGTGGCGATAGCCCCTCA
TCAGACGGACATACTCGCGCTTCTCCTGCTCGTGCCGTAGGGCATAGACG
TTCTTCTGCGTCTCGTCCAGGGACTCCCACATGGTTTGCACTATCACTTG
CATTTGCTCCAACGAACAGGTCGGATTCTGCTGCTTGATGGCCGTCACGG
TGTCTCGAAAGAACAGAGCGAAGGGCGCCAGAGGTTTAGGAGGTGCTTGC
GCCATGGCCTGGTTCTGCTGCTGCTCCGGCTGAACCAGCAAGTTCTGCCC
GCCGCCGCTGGCATATGTGTCGCAATTTTCCTCGTCATCGTCGTTCAACA
TGGATTGATCCAGGCTAAGCATTCTCCGCGAGGCTTGGCTGGGGCTCTGG
CTCTCCGCCGGCGTGTCGGTCAGCTCANACACCTCGTCGCCGAATGAGGG
AGTGTGGAACTGATTCATGTCGACTGATAACT

BO10373.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PA 753 CG12104-RA 1..750 768..19 3731 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 1398 CG12104-RB 103..853 769..19 3744 99.9 Minus
CG12104-RA 1182 CG12104-RA 103..853 769..19 3744 99.9 Minus
CG12104-RC 1029 CG12104-RC 38..700 681..19 3315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1601271..1601933 19..681 3315 100 Plus
3L 28110227 3L 1602485..1602572 682..769 429 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 17:55:20 has no hits.

BO10373.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:55 Download gff for BO10373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 18..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:13 Download gff for BO10373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 18..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:10:25 Download gff for BO10373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..858 12..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:23 Download gff for BO10373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..858 12..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:23 Download gff for BO10373.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1601266..1601933 12..681 99 <- Plus
3L 1602485..1602577 682..775 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:10:25 Download gff for BO10373.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1601266..1601933 12..681 99 <- Plus
arm_3L 1602485..1602577 682..775 96   Plus

BO10373.5prime Sequence

782 bp (781 high quality bases) assembled on 2006-04-19

> BO10373.5prime
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCAGCAAGCTTTCTAGACC

BO10373.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PA 753 CG12104-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 1398 CG12104-RB 103..853 16..766 3755 100 Plus
CG12104-RA 1182 CG12104-RA 103..853 16..766 3755 100 Plus
CG12104-RC 1029 CG12104-RC 38..700 104..766 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1601271..1601933 766..104 3315 100 Minus
3L 28110227 3L 1602485..1602572 103..16 440 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:07:13 has no hits.

BO10373.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:57 Download gff for BO10373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:15 Download gff for BO10373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-PA 1..753 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:28 Download gff for BO10373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..858 10..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:06 Download gff for BO10373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 98..858 10..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:06 Download gff for BO10373.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1601266..1601933 104..773 99 <- Minus
3L 1602485..1602577 10..103 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:28 Download gff for BO10373.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1601266..1601933 104..773 99 <- Minus
arm_3L 1602485..1602577 10..103 97   Minus

BO10373.complete Sequence

784 bp (784 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631726

> BO10373.complete
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCAGCAAGCTTTCTAGACCAT

BO10373.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 753 CG12104-PB 1..750 17..766 3750 100 Plus
CG12104-RA 753 CG12104-PA 1..750 17..766 3750 100 Plus
CG12104-RC 681 CG12104-PC 16..678 104..766 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-RB 1398 CG12104-RB 103..853 16..766 3755 100 Plus
CG12104-RA 1182 CG12104-RA 103..853 16..766 3755 100 Plus
CG12104-RC 1029 CG12104-RC 38..700 104..766 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1601271..1601933 766..104 3315 100 Minus
3L 28110227 3L 1602485..1602572 103..16 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:58:39 has no hits.

BO10373.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:09 Download gff for BO10373.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 1..753 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:50 Download gff for BO10373.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 142..902 10..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:19 Download gff for BO10373.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 104..853 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:09 Download gff for BO10373.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 142..902 10..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:29 Download gff for BO10373.complete
Subject Subject Range Query Range Percent Splice Strand
CG12104-RA 104..853 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:29 Download gff for BO10373.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1601267..1601933 104..768 99 <- Minus
3L 1602485..1602571 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:19 Download gff for BO10373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1601267..1601933 104..768 99 <- Minus
arm_3L 1602485..1602571 17..103 100   Minus

BO10373.pep Sequence

Translation from 16 to 784

> BO10373.pep
MNQFHTPSFGDEVFELTDTPAESQSPSQASRRMLSLDQSMLNDDDEENCD
TYASGGGQNLLVQPEQQQNQAMAQAPPKPLAPFALFFRDTVTAIKQQNPT
CSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRLMRGYRHQLSES
EGTSEAEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQEPPPDQIQLLT
EAARVQKCTREQCNKPAIINPDWEDEYCSNECVVIHCRNVFNHWVISMNS
ASFLDH

BO10373.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12104-PB 250 CG12104-PB 1..250 1..250 1323 100 Plus
CG12104-PA 250 CG12104-PA 1..250 1..250 1323 100 Plus
CG12104-PC 226 CG12104-PC 6..226 30..250 1170 100 Plus