Clone Sequence Records
BO10373.3prime Sequence
782 bp (781 high quality bases) assembled on 2006-04-19
> BO10373.3prime
ATGGTCTAGAAAGCTTGCTGAGTTCATGGATATTACCCAGTGGTTGAATA
CATTCCGGCAGTGGATGACGACGCACTCGTTGCTGCAGTACTCGTCCTCC
CAGTCCGGATTTATGATAGCTGGCTTATTGCACTGTTCCCGTGTGCACTT
CTGCACCCTAGCCGCTTCGGTGAGGAGCTGTATCTGATCGGGCGGCGGCT
CCTGCTGGGCATCCACCGACTGTTGCAGATCCTCGACAGACTCCAATTTG
GTTGTGACTAGAGGAGGTGGCTGATTGGTAGCTACTGCTGGTGGGGCCTC
TGCCTCCGACGTACCCTCCGACTCGGACAGCTGGTGGCGATAGCCCCTCA
TCAGACGGACATACTCGCGCTTCTCCTGCTCGTGCCGTAGGGCATAGACG
TTCTTCTGCGTCTCGTCCAGGGACTCCCACATGGTTTGCACTATCACTTG
CATTTGCTCCAACGAACAGGTCGGATTCTGCTGCTTGATGGCCGTCACGG
TGTCTCGAAAGAACAGAGCGAAGGGCGCCAGAGGTTTAGGAGGTGCTTGC
GCCATGGCCTGGTTCTGCTGCTGCTCCGGCTGAACCAGCAAGTTCTGCCC
GCCGCCGCTGGCATATGTGTCGCAATTTTCCTCGTCATCGTCGTTCAACA
TGGATTGATCCAGGCTAAGCATTCTCCGCGAGGCTTGGCTGGGGCTCTGG
CTCTCCGCCGGCGTGTCGGTCAGCTCANACACCTCGTCGCCGAATGAGGG
AGTGTGGAACTGATTCATGTCGACTGATAACT
BO10373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-PA | 753 | CG12104-RA | 1..750 | 768..19 | 3731 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 1398 | CG12104-RB | 103..853 | 769..19 | 3744 | 99.9 | Minus |
CG12104-RA | 1182 | CG12104-RA | 103..853 | 769..19 | 3744 | 99.9 | Minus |
CG12104-RC | 1029 | CG12104-RC | 38..700 | 681..19 | 3315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1601271..1601933 | 19..681 | 3315 | 100 | Plus |
3L | 28110227 | 3L | 1602485..1602572 | 682..769 | 429 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:55:20 has no hits.
BO10373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:55 Download gff for
BO10373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:13 Download gff for
BO10373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:10:25 Download gff for
BO10373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..858 | 12..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:23 Download gff for
BO10373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..858 | 12..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:23 Download gff for
BO10373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1601266..1601933 | 12..681 | 99 | <- | Plus |
3L | 1602485..1602577 | 682..775 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:10:25 Download gff for
BO10373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1601266..1601933 | 12..681 | 99 | <- | Plus |
arm_3L | 1602485..1602577 | 682..775 | 96 | | Plus |
BO10373.5prime Sequence
782 bp (781 high quality bases) assembled on 2006-04-19
> BO10373.5prime
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCAGCAAGCTTTCTAGACC
BO10373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-PA | 753 | CG12104-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 1398 | CG12104-RB | 103..853 | 16..766 | 3755 | 100 | Plus |
CG12104-RA | 1182 | CG12104-RA | 103..853 | 16..766 | 3755 | 100 | Plus |
CG12104-RC | 1029 | CG12104-RC | 38..700 | 104..766 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1601271..1601933 | 766..104 | 3315 | 100 | Minus |
3L | 28110227 | 3L | 1602485..1602572 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:07:13 has no hits.
BO10373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:37:57 Download gff for
BO10373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:15 Download gff for
BO10373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-PA | 1..753 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:28 Download gff for
BO10373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..858 | 10..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:06 Download gff for
BO10373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 98..858 | 10..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:06 Download gff for
BO10373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1601266..1601933 | 104..773 | 99 | <- | Minus |
3L | 1602485..1602577 | 10..103 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:28 Download gff for
BO10373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1601266..1601933 | 104..773 | 99 | <- | Minus |
arm_3L | 1602485..1602577 | 10..103 | 97 | | Minus |
BO10373.complete Sequence
784 bp (784 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631726
> BO10373.complete
GAAGTTATCAGTCGACATGAATCAGTTCCACACTCCCTCATTCGGCGACG
AGGTGTTTGAGCTGACCGACACGCCGGCGGAGAGCCAGAGCCCCAGCCAA
GCCTCGCGGAGAATGCTTAGCCTGGATCAATCCATGTTGAACGACGATGA
CGAGGAAAATTGCGACACATATGCCAGCGGCGGCGGGCAGAACTTGCTGG
TTCAGCCGGAGCAGCAGCAGAACCAGGCCATGGCGCAAGCACCTCCTAAA
CCTCTGGCGCCCTTCGCTCTGTTCTTTCGAGACACCGTGACGGCCATCAA
GCAGCAGAATCCGACCTGTTCGTTGGAGCAAATGCAAGTGATAGTGCAAA
CCATGTGGGAGTCCCTGGACGAGACGCAGAAGAACGTCTATGCCCTACGG
CACGAGCAGGAGAAGCGCGAGTATGTCCGTCTGATGAGGGGCTATCGCCA
CCAGCTGTCCGAGTCGGAGGGTACGTCGGAGGCAGAGGCCCCACCAGCAG
TAGCTACCAATCAGCCACCTCCTCTAGTCACAACCAAATTGGAGTCTGTC
GAGGATCTGCAACAGTCGGTGGATGCCCAGCAGGAGCCGCCGCCCGATCA
GATACAGCTCCTCACCGAAGCGGCTAGGGTGCAGAAGTGCACACGGGAAC
AGTGCAATAAGCCAGCTATCATAAATCCGGACTGGGAGGACGAGTACTGC
AGCAACGAGTGCGTCGTCATCCACTGCCGGAATGTATTCAACCACTGGGT
AATATCCATGAACTCAGCAAGCTTTCTAGACCAT
BO10373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 753 | CG12104-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG12104-RA | 753 | CG12104-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
CG12104-RC | 681 | CG12104-PC | 16..678 | 104..766 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-RB | 1398 | CG12104-RB | 103..853 | 16..766 | 3755 | 100 | Plus |
CG12104-RA | 1182 | CG12104-RA | 103..853 | 16..766 | 3755 | 100 | Plus |
CG12104-RC | 1029 | CG12104-RC | 38..700 | 104..766 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1601271..1601933 | 766..104 | 3315 | 100 | Minus |
3L | 28110227 | 3L | 1602485..1602572 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:58:39 has no hits.
BO10373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:09 Download gff for
BO10373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 1..753 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:50 Download gff for
BO10373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 142..902 | 10..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:19 Download gff for
BO10373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 104..853 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:09 Download gff for
BO10373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 142..902 | 10..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:29 Download gff for
BO10373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12104-RA | 104..853 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:29 Download gff for
BO10373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1601267..1601933 | 104..768 | 99 | <- | Minus |
3L | 1602485..1602571 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:19 Download gff for
BO10373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1601267..1601933 | 104..768 | 99 | <- | Minus |
arm_3L | 1602485..1602571 | 17..103 | 100 | | Minus |
BO10373.pep Sequence
Translation from 16 to 784
> BO10373.pep
MNQFHTPSFGDEVFELTDTPAESQSPSQASRRMLSLDQSMLNDDDEENCD
TYASGGGQNLLVQPEQQQNQAMAQAPPKPLAPFALFFRDTVTAIKQQNPT
CSLEQMQVIVQTMWESLDETQKNVYALRHEQEKREYVRLMRGYRHQLSES
EGTSEAEAPPAVATNQPPPLVTTKLESVEDLQQSVDAQQEPPPDQIQLLT
EAARVQKCTREQCNKPAIINPDWEDEYCSNECVVIHCRNVFNHWVISMNS
ASFLDH
BO10373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12104-PB | 250 | CG12104-PB | 1..250 | 1..250 | 1323 | 100 | Plus |
CG12104-PA | 250 | CG12104-PA | 1..250 | 1..250 | 1323 | 100 | Plus |
CG12104-PC | 226 | CG12104-PC | 6..226 | 30..250 | 1170 | 100 | Plus |