Clone Sequence Records
BO10379.3prime Sequence
935 bp (839 high quality bases) assembled on 2006-04-19
> BO10379.3prime
ATGGTCTAGAAAGCTTGCCGCCTTGGCCCCCGGTATCTTGGACAGAACCT
TGGACAAATCCACTCCGGTCAAGGCGTTGATCGATGGCGGTAGCTGGGCC
ACCAAGCGAGTCACATCGTTGGTTATATTATCGTTGCCGCCAATTAGGAC
AATCTCATCGGTTTTGGCCAGTGGTGCAGCCACCTCAGCGGCAATCTTGG
GCAGCGATTCGAGTACAATATTCATAATTGCTGCATCGCCGTACTGCTTG
TACACATGGGCCTTCATCCGCATGCGTTCCGCCTCCGCCTTGCCCACCAA
CTCGATGGCATGGGCCTCCGCCGATCCGATCTTGCGTATGCGCTCCGCCT
CGGCACGGGCACCCTCGATGGTCTGACATTGCTTGGCCTGCGCAAGGGTC
TGGAGGCGGAAGGCCTCGGCCTCGGCGGGCAGCTTGACTGTGCCAGTGAG
CTCGCGATCCTTGCGCTGCACTTCCTGCGACTCAATCTCGATCTGCTTGC
GTCGCTCCACCACCTCGATCTGAATCTCCTCGTTACGGATGCGCTGGCGG
ATCTTGGCTGCCTGCAGCTCGTAGGCCAACTGCGATTCGGCCTTGGCCGT
GTTGATCTCCTGATCGAAATTGGCCTTCTGCAGCTTGTACATCCTGGTGT
TGTCCTCGATTTTCGTGTCCGTCGAGTATTTCACATCCATGGCGCTCTTT
TCGCACTCCGCCTCACGGATACCGGCATCTCGATTGGCCTCCGCCACGCC
GGCATCTGCATCCCGCTTGACCACGGCGGTCTGGGCCTTGCCCAACGAGG
CCAGGTACTGCACATCATCGTAGACGTCCTTGATCGTAAACGAGAGAATC
TCGATGCCCATACGACCCACGTNCGGTGCGGCCACCTCGCGCACCAAGCA
GCGAATTGGTCGCGGTCCTTGTACACCTCTTCTAC
BO10379.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32593-PA | 1317 | Flo-2-RA | 435..1314 | 898..19 | 4381 | 99.8 | Minus |
CG32593-PB | 1278 | Flo-2-RB | 396..1275 | 898..19 | 4381 | 99.8 | Minus |
CG32593-PE | 1317 | Flo-2-RE | 435..1314 | 898..19 | 4381 | 99.8 | Minus |
CG32593-PF | 1278 | Flo-2-RF | 396..1275 | 898..19 | 4381 | 99.8 | Minus |
CG32593-PC | 1206 | Flo-2-RC | 324..1203 | 898..19 | 4381 | 99.8 | Minus |
CG32593-PD | 846 | Flo-2-RD | 1..843 | 861..19 | 4215 | 100 | Minus |
CG32593-PA | 1317 | Flo-2-RA | 397..434 | 935..898 | 190 | 100 | Minus |
CG32593-PB | 1278 | Flo-2-RB | 358..395 | 935..898 | 190 | 100 | Minus |
CG32593-PE | 1317 | Flo-2-RE | 397..434 | 935..898 | 190 | 100 | Minus |
CG32593-PF | 1278 | Flo-2-RF | 358..395 | 935..898 | 190 | 100 | Minus |
CG32593-PC | 1206 | Flo-2-RC | 286..323 | 935..898 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RM | 2602 | CG32593-RM | 896..1813 | 935..19 | 4554 | 99.8 | Minus |
Flo2-RA | 2819 | CG32593-RA | 543..1460 | 935..19 | 4554 | 99.8 | Minus |
Flo2-RH | 2429 | CG32593-RH | 153..1070 | 935..19 | 4554 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930758..14931314 | 935..380 | 2724 | 99.6 | Minus |
X | 23542271 | X | 14931802..14931985 | 379..196 | 920 | 100 | Minus |
X | 23542271 | X | 14932046..14932224 | 197..19 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:14:17 has no hits.
BO10379.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:03 Download gff for
BO10379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-PF | 358..1278 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:24 Download gff for
BO10379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32593-PE | 397..1317 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:23:06 Download gff for
BO10379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RG | 486..1411 | 12..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:02 Download gff for
BO10379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RH | 153..1078 | 12..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:02 Download gff for
BO10379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14930758..14931314 | 380..935 | 99 | -> | Minus |
X | 14931802..14931985 | 196..379 | 100 | -> | Minus |
X | 14932048..14932232 | 12..195 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:23:06 Download gff for
BO10379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14824791..14825347 | 380..935 | 99 | -> | Minus |
arm_X | 14825835..14826018 | 196..379 | 100 | -> | Minus |
arm_X | 14826081..14826265 | 12..195 | 98 | | Minus |
BO10379.5prime Sequence
813 bp (812 high quality bases) assembled on 2006-04-19
> BO10379.5prime
GAAGTTATCAGTCGACATGCCTTCACACACATGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCANGCAGATCGA
GATTGAGTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGC
BO10379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32593-PC | 1206 | Flo-2-RC | 1..797 | 17..813 | 3966 | 99.8 | Plus |
CG32593-PA | 1317 | Flo-2-RA | 275..908 | 180..813 | 3151 | 99.8 | Plus |
CG32593-PB | 1278 | Flo-2-RB | 236..869 | 180..813 | 3151 | 99.8 | Plus |
CG32593-PE | 1317 | Flo-2-RE | 275..908 | 180..813 | 3151 | 99.8 | Plus |
CG32593-PF | 1278 | Flo-2-RF | 236..869 | 180..813 | 3151 | 99.8 | Plus |
CG32593-PD | 846 | Flo-2-RD | 1..437 | 377..813 | 2166 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RM | 2602 | CG32593-RM | 611..1407 | 17..813 | 3974 | 99.9 | Plus |
Flo2-RJ | 3212 | CG32593-RJ | 421..1084 | 150..813 | 3309 | 99.8 | Plus |
Flo2-RI | 2240 | CG32593-RI | 382..1045 | 150..813 | 3309 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930746..14931269 | 290..813 | 2609 | 99.8 | Plus |
X | 23542271 | X | 14926601..14926875 | 17..291 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:16:03 has no hits.
BO10379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:04 Download gff for
BO10379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-PC | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:26 Download gff for
BO10379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32593-PC | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:31:58 Download gff for
BO10379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1407 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:31 Download gff for
BO10379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RM | 611..1407 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:31 Download gff for
BO10379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14926601..14926874 | 17..290 | 100 | -> | Plus |
X | 14930747..14931269 | 291..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:31:58 Download gff for
BO10379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14820634..14820907 | 17..290 | 100 | -> | Plus |
arm_X | 14824780..14825302 | 291..813 | 99 | | Plus |
BO10379.complete Sequence
1237 bp (1237 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631727
> BO10379.complete
GAAGTTATCAGTCGACATGCCTTCACACACATGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGA
GATTGAGTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGACCCTTGCGCAG
GCCAAGCAATGTCAGACCATCGAGGGTGCCCGTGCCGAGGCGGAGCGCAT
ACGCAAGATCGGATCGGCGGAGGCCCATGCCATCGAGTTGGTGGGCAAGG
CGGAGGCGGAACGCATGCGGATGAAGGCCCATGTGTACAAGCAGTACGGC
GATGCAGCAATTATGAATATTGTACTCGAATCGCTGCCCAAGATTGCCGC
TGAGGTGGCTGCACCACTGGCCAAAACCGATGAGATTGTCCTAATTGGCG
GCAACGATAATATAACCAACGATGTGACTCGCTTGGTGGCCCAGCTACCG
CCATCGATCAACGCCTTGACCGGAGTGGATTTGTCCAAGGTTCTGTCCAA
GATACCGGGGGCCAAGGCGGCAAGCTTTCTAGACCAT
BO10379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RJ | 1347 | CG32593-PJ | 275..1344 | 150..1219 | 5350 | 100 | Plus |
Flo2-RI | 1308 | CG32593-PI | 236..1305 | 150..1219 | 5350 | 100 | Plus |
Flo2-RM | 1071 | CG32593-PM | 1..1068 | 152..1219 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RM | 2602 | CG32593-RM | 611..1813 | 17..1219 | 6015 | 100 | Plus |
Flo2-RJ | 3212 | CG32593-RJ | 421..1490 | 150..1219 | 5350 | 100 | Plus |
Flo2-RI | 2240 | CG32593-RI | 382..1451 | 150..1219 | 5350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930746..14931314 | 290..858 | 2845 | 100 | Plus |
X | 23542271 | X | 14926601..14926875 | 17..291 | 1375 | 100 | Plus |
X | 23542271 | X | 14931802..14931985 | 859..1042 | 920 | 100 | Plus |
X | 23542271 | X | 14932046..14932224 | 1041..1219 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:13:44 has no hits.
BO10379.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:10 Download gff for
BO10379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 1..1206 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:52 Download gff for
BO10379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1821 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:19 Download gff for
BO10379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1813 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:10 Download gff for
BO10379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RC | 611..1821 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:12 Download gff for
BO10379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RM | 611..1813 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:12 Download gff for
BO10379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14932048..14932224 | 1043..1221 | 98 | | Plus |
X | 14926601..14926874 | 17..290 | 100 | -> | Plus |
X | 14930747..14931314 | 291..858 | 100 | -> | Plus |
X | 14931802..14931985 | 859..1042 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:19 Download gff for
BO10379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14826081..14826257 | 1043..1221 | 98 | | Plus |
arm_X | 14820634..14820907 | 17..290 | 100 | -> | Plus |
arm_X | 14824780..14825347 | 291..858 | 100 | -> | Plus |
arm_X | 14825835..14826018 | 859..1042 | 100 | -> | Plus |
BO10379.pep Sequence
Translation from 16 to 1237
> BO10379.pep
MPSHTCTPTRGHSHNETTHTHTHTQTLTHTHTNTLTHTHKHKHVQMMNVY
YFHHQADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVY
KDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAV
VKRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKA
NFDQEINTAKAESQLAYELQAAKIRQRIRNEEIQIEVVERRKQIEIESQE
VQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRKIGS
AEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAP
LAKTDEIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAK
AASFLDH
BO10379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-PI | 435 | CG32593-PI | 68..435 | 34..401 | 1758 | 97.6 | Plus |
Flo2-PJ | 448 | CG32593-PJ | 92..448 | 45..401 | 1751 | 99.7 | Plus |
Flo2-PM | 356 | CG32593-PM | 1..356 | 46..401 | 1749 | 100 | Plus |
Flo2-PA | 438 | CG32593-PA | 88..438 | 51..401 | 1696 | 98.9 | Plus |
Flo2-PK | 438 | CG32593-PK | 88..438 | 51..401 | 1696 | 98.9 | Plus |