Clone BO10379 Report

Search the DGRC for BO10379

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptFlo-2-RC
Protein status:BO10379.pep: validated full length
Sequenced Size:1237

Clone Sequence Records

BO10379.3prime Sequence

935 bp (839 high quality bases) assembled on 2006-04-19

> BO10379.3prime
ATGGTCTAGAAAGCTTGCCGCCTTGGCCCCCGGTATCTTGGACAGAACCT
TGGACAAATCCACTCCGGTCAAGGCGTTGATCGATGGCGGTAGCTGGGCC
ACCAAGCGAGTCACATCGTTGGTTATATTATCGTTGCCGCCAATTAGGAC
AATCTCATCGGTTTTGGCCAGTGGTGCAGCCACCTCAGCGGCAATCTTGG
GCAGCGATTCGAGTACAATATTCATAATTGCTGCATCGCCGTACTGCTTG
TACACATGGGCCTTCATCCGCATGCGTTCCGCCTCCGCCTTGCCCACCAA
CTCGATGGCATGGGCCTCCGCCGATCCGATCTTGCGTATGCGCTCCGCCT
CGGCACGGGCACCCTCGATGGTCTGACATTGCTTGGCCTGCGCAAGGGTC
TGGAGGCGGAAGGCCTCGGCCTCGGCGGGCAGCTTGACTGTGCCAGTGAG
CTCGCGATCCTTGCGCTGCACTTCCTGCGACTCAATCTCGATCTGCTTGC
GTCGCTCCACCACCTCGATCTGAATCTCCTCGTTACGGATGCGCTGGCGG
ATCTTGGCTGCCTGCAGCTCGTAGGCCAACTGCGATTCGGCCTTGGCCGT
GTTGATCTCCTGATCGAAATTGGCCTTCTGCAGCTTGTACATCCTGGTGT
TGTCCTCGATTTTCGTGTCCGTCGAGTATTTCACATCCATGGCGCTCTTT
TCGCACTCCGCCTCACGGATACCGGCATCTCGATTGGCCTCCGCCACGCC
GGCATCTGCATCCCGCTTGACCACGGCGGTCTGGGCCTTGCCCAACGAGG
CCAGGTACTGCACATCATCGTAGACGTCCTTGATCGTAAACGAGAGAATC
TCGATGCCCATACGACCCACGTNCGGTGCGGCCACCTCGCGCACCAAGCA
GCGAATTGGTCGCGGTCCTTGTACACCTCTTCTAC

BO10379.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PA 1317 Flo-2-RA 435..1314 898..19 4381 99.8 Minus
CG32593-PB 1278 Flo-2-RB 396..1275 898..19 4381 99.8 Minus
CG32593-PE 1317 Flo-2-RE 435..1314 898..19 4381 99.8 Minus
CG32593-PF 1278 Flo-2-RF 396..1275 898..19 4381 99.8 Minus
CG32593-PC 1206 Flo-2-RC 324..1203 898..19 4381 99.8 Minus
CG32593-PD 846 Flo-2-RD 1..843 861..19 4215 100 Minus
CG32593-PA 1317 Flo-2-RA 397..434 935..898 190 100 Minus
CG32593-PB 1278 Flo-2-RB 358..395 935..898 190 100 Minus
CG32593-PE 1317 Flo-2-RE 397..434 935..898 190 100 Minus
CG32593-PF 1278 Flo-2-RF 358..395 935..898 190 100 Minus
CG32593-PC 1206 Flo-2-RC 286..323 935..898 190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 896..1813 935..19 4554 99.8 Minus
Flo2-RA 2819 CG32593-RA 543..1460 935..19 4554 99.8 Minus
Flo2-RH 2429 CG32593-RH 153..1070 935..19 4554 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930758..14931314 935..380 2724 99.6 Minus
X 23542271 X 14931802..14931985 379..196 920 100 Minus
X 23542271 X 14932046..14932224 197..19 895 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:14:17 has no hits.

BO10379.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:03 Download gff for BO10379.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-PF 358..1278 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:24 Download gff for BO10379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PE 397..1317 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:23:06 Download gff for BO10379.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RG 486..1411 12..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:02 Download gff for BO10379.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RH 153..1078 12..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:02 Download gff for BO10379.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14930758..14931314 380..935 99 -> Minus
X 14931802..14931985 196..379 100 -> Minus
X 14932048..14932232 12..195 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:23:06 Download gff for BO10379.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14824791..14825347 380..935 99 -> Minus
arm_X 14825835..14826018 196..379 100 -> Minus
arm_X 14826081..14826265 12..195 98   Minus

BO10379.5prime Sequence

813 bp (812 high quality bases) assembled on 2006-04-19

> BO10379.5prime
GAAGTTATCAGTCGACATGCCTTCACACACATGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCANGCAGATCGA
GATTGAGTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGC

BO10379.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PC 1206 Flo-2-RC 1..797 17..813 3966 99.8 Plus
CG32593-PA 1317 Flo-2-RA 275..908 180..813 3151 99.8 Plus
CG32593-PB 1278 Flo-2-RB 236..869 180..813 3151 99.8 Plus
CG32593-PE 1317 Flo-2-RE 275..908 180..813 3151 99.8 Plus
CG32593-PF 1278 Flo-2-RF 236..869 180..813 3151 99.8 Plus
CG32593-PD 846 Flo-2-RD 1..437 377..813 2166 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 611..1407 17..813 3974 99.9 Plus
Flo2-RJ 3212 CG32593-RJ 421..1084 150..813 3309 99.8 Plus
Flo2-RI 2240 CG32593-RI 382..1045 150..813 3309 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14931269 290..813 2609 99.8 Plus
X 23542271 X 14926601..14926875 17..291 1375 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:16:03 has no hits.

BO10379.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:04 Download gff for BO10379.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-PC 1..797 17..813 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:26 Download gff for BO10379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PC 1..797 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:31:58 Download gff for BO10379.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1407 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:31 Download gff for BO10379.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RM 611..1407 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:31 Download gff for BO10379.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14926601..14926874 17..290 100 -> Plus
X 14930747..14931269 291..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:31:58 Download gff for BO10379.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14820634..14820907 17..290 100 -> Plus
arm_X 14824780..14825302 291..813 99   Plus

BO10379.complete Sequence

1237 bp (1237 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631727

> BO10379.complete
GAAGTTATCAGTCGACATGCCTTCACACACATGCACACCGACACGGGGAC
ACTCACACAACGAAACCACACACACACACACACACACACAAACACTCACA
CACACACACACAAACACTCTCACACACACACATAAACACAAACACGTACA
GATGATGAATGTTTATTATTTCCACCATCAGGCCGACGAGCTTCTAGGCA
CTGCCAGCGAGCAATTCCTTGGAAAGAGCGTCAAGGAGATCAAGCAGACG
ATCCTGCAAACCCTCGAAGGACATTTGAGAGCCATATTGGGAACGCTTAC
AGTAGAAGAGGTGTACAAGGACCGCGACCAATTCGCTGCCTTGGTGCGCG
AGGTGGCCGCACCGGACGTGGGTCGTATGGGCATCGAGATTCTCTCGTTT
ACGATCAAGGACGTCTACGATGATGTGCAGTACCTGGCCTCGTTGGGCAA
GGCCCAGACCGCCGTGGTCAAGCGGGATGCAGATGCCGGCGTGGCGGAGG
CCAATCGAGATGCCGGTATCCGTGAGGCGGAGTGCGAAAAGAGCGCCATG
GATGTGAAATACTCGACGGACACGAAAATCGAGGACAACACCAGGATGTA
CAAGCTGCAGAAGGCCAATTTCGATCAGGAGATCAACACGGCCAAGGCCG
AATCGCAGTTGGCCTACGAGCTGCAGGCAGCCAAGATCCGCCAGCGCATC
CGTAACGAGGAGATTCAGATCGAGGTGGTGGAGCGACGCAAGCAGATCGA
GATTGAGTCGCAGGAAGTGCAGCGCAAGGATCGCGAGCTCACTGGCACAG
TCAAGCTGCCCGCCGAGGCCGAGGCCTTCCGCCTCCAGACCCTTGCGCAG
GCCAAGCAATGTCAGACCATCGAGGGTGCCCGTGCCGAGGCGGAGCGCAT
ACGCAAGATCGGATCGGCGGAGGCCCATGCCATCGAGTTGGTGGGCAAGG
CGGAGGCGGAACGCATGCGGATGAAGGCCCATGTGTACAAGCAGTACGGC
GATGCAGCAATTATGAATATTGTACTCGAATCGCTGCCCAAGATTGCCGC
TGAGGTGGCTGCACCACTGGCCAAAACCGATGAGATTGTCCTAATTGGCG
GCAACGATAATATAACCAACGATGTGACTCGCTTGGTGGCCCAGCTACCG
CCATCGATCAACGCCTTGACCGGAGTGGATTTGTCCAAGGTTCTGTCCAA
GATACCGGGGGCCAAGGCGGCAAGCTTTCTAGACCAT

BO10379.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RJ 1347 CG32593-PJ 275..1344 150..1219 5350 100 Plus
Flo2-RI 1308 CG32593-PI 236..1305 150..1219 5350 100 Plus
Flo2-RM 1071 CG32593-PM 1..1068 152..1219 5340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 611..1813 17..1219 6015 100 Plus
Flo2-RJ 3212 CG32593-RJ 421..1490 150..1219 5350 100 Plus
Flo2-RI 2240 CG32593-RI 382..1451 150..1219 5350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14931314 290..858 2845 100 Plus
X 23542271 X 14926601..14926875 17..291 1375 100 Plus
X 23542271 X 14931802..14931985 859..1042 920 100 Plus
X 23542271 X 14932046..14932224 1041..1219 895 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:13:44 has no hits.

BO10379.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:10 Download gff for BO10379.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 1..1206 17..1222 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:52 Download gff for BO10379.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1821 17..1226 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:19 Download gff for BO10379.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1813 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:10 Download gff for BO10379.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RC 611..1821 17..1226 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:12 Download gff for BO10379.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RM 611..1813 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:12 Download gff for BO10379.complete
Subject Subject Range Query Range Percent Splice Strand
X 14932048..14932224 1043..1221 98   Plus
X 14926601..14926874 17..290 100 -> Plus
X 14930747..14931314 291..858 100 -> Plus
X 14931802..14931985 859..1042 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:19 Download gff for BO10379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14826081..14826257 1043..1221 98   Plus
arm_X 14820634..14820907 17..290 100 -> Plus
arm_X 14824780..14825347 291..858 100 -> Plus
arm_X 14825835..14826018 859..1042 100 -> Plus

BO10379.pep Sequence

Translation from 16 to 1237

> BO10379.pep
MPSHTCTPTRGHSHNETTHTHTHTQTLTHTHTNTLTHTHKHKHVQMMNVY
YFHHQADELLGTASEQFLGKSVKEIKQTILQTLEGHLRAILGTLTVEEVY
KDRDQFAALVREVAAPDVGRMGIEILSFTIKDVYDDVQYLASLGKAQTAV
VKRDADAGVAEANRDAGIREAECEKSAMDVKYSTDTKIEDNTRMYKLQKA
NFDQEINTAKAESQLAYELQAAKIRQRIRNEEIQIEVVERRKQIEIESQE
VQRKDRELTGTVKLPAEAEAFRLQTLAQAKQCQTIEGARAEAERIRKIGS
AEAHAIELVGKAEAERMRMKAHVYKQYGDAAIMNIVLESLPKIAAEVAAP
LAKTDEIVLIGGNDNITNDVTRLVAQLPPSINALTGVDLSKVLSKIPGAK
AASFLDH

BO10379.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PI 435 CG32593-PI 68..435 34..401 1758 97.6 Plus
Flo2-PJ 448 CG32593-PJ 92..448 45..401 1751 99.7 Plus
Flo2-PM 356 CG32593-PM 1..356 46..401 1749 100 Plus
Flo2-PA 438 CG32593-PA 88..438 51..401 1696 98.9 Plus
Flo2-PK 438 CG32593-PK 88..438 51..401 1696 98.9 Plus