Clone BO10391 Report

Search the DGRC for BO10391

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptrho-4-RA
Protein status:BO10391.pep: validated full length
Sequenced Size:1285

Clone Sequence Records

BO10391.3prime Sequence

959 bp (860 high quality bases) assembled on 2006-04-19

> BO10391.3prime
ATGGTCTAGAAAGCTTGCGTTGTACTCCTGTTTTGGGAAGTAGTCGGGAA
CAAACACGTGTATGATGATGCCAGTGGTCATGAGGGCAAAGTAAACGATG
ACGGCGACCCACCAGAGAATGCGCTCCCATCGCCGCACCTCCAAATTGCG
CAGCACACCGATCCCCACCAGCAAACCGGCGACGGCACCGGACAAATGCG
CCACATAGCCAATCTGATCGTGCTGGTCGGTCAAGTGGCGGTACACCGAG
GTACCCAAGTCGGTGAAGCAGAAGACCAGAAAGGCCAGCAGCTGGACAAT
GGCGTACTCCATTTCCGAGTAGTTCATAATTATCGTGGCAATGTGGGCTG
TGATCAGTGCGTATACTCCACCCGATGCGCCCGCTAGAAAGATGCGAGGA
CTGGTTAGCGAGGTGCCCATGGAACCGGCTAACACGCCAGCCAGGTAGAC
CAGACCCACGCGCCACCAGTGATGCACCAGCTCCAGGGCGATGCCCAGAA
AGATCTGGATAATCAGGTTCATCATCAGATGCATGATGCCCACGTGAACG
AACATGTAGCTAACAAAGCGCCATCCCTCATAGCGCTTGTACGGATTGTA
GATGAACAGGGTGGCCGCTGGTCCACTTGTGCTCTCGCCTATGCGATCCT
GGTAGTTGGGATCGTCCTGGAAATGTATGACGTCCACGAGGAACATGATT
ATCTCGATAATCGAGAAGAGCACCATGGTGAGCGGCGGCGGGCAGATGGA
CATTTGCTTCTCGTAGGCACCGTCGGGCTCATCGCCCTCTAAGGGCTTCG
GTGGCGGCACAACGTAGCGACAGTAGCGGGTCAGCATGTTGCGCACCATC
CACTTGTGGCGCAGGGACATCGCATAGAATTCCTCGAAGTCCAGGTGGCC
GTCGTTATCCTGATCGCTGCGCTTCAGGATCTGGTCGGCGATGTAGGCGG
GGATGTCCC

BO10391.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1697-PB 1254 rho-4-RB 311..1251 959..19 4680 99.8 Minus
CG1697-PA 1254 rho-4-RA 311..1251 959..19 4680 99.8 Minus
CG1697-PC 855 rho-4-RC 1..852 870..19 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4-RB 2345 CG1697-RB 560..1500 959..19 4690 99.9 Minus
rho-4-RA 2057 CG1697-RA 560..1500 959..19 4690 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11604736..11605078 667..325 1715 100 Minus
X 23542271 X 11605137..11605443 325..19 1535 100 Minus
X 23542271 X 11604382..11604674 959..667 1450 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 01:06:49 has no hits.

BO10391.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:24 Download gff for BO10391.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-4-PA 311..1254 18..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:55 Download gff for BO10391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1697-PA 311..1254 18..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:13:23 Download gff for BO10391.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 560..1504 13..959 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:25 Download gff for BO10391.3prime
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 560..1504 13..959 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:25 Download gff for BO10391.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11604382..11604673 668..959 99 -> Minus
X 11604736..11605078 325..667 100 -> Minus
X 11605138..11605447 13..324 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:13:23 Download gff for BO10391.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11499171..11499480 13..324 99   Minus
arm_X 11498415..11498706 668..959 99 -> Minus
arm_X 11498769..11499111 325..667 100 -> Minus

BO10391.5prime Sequence

915 bp (825 high quality bases) assembled on 2006-04-19

> BO10391.5prime
GAAGTTATCAGTCGACATGCCCGTGAAAACAGTGAATCGCCAGCAGAGCC
AAACGCCCGCCCAACAACTGCAATTGCAGCAGCAGCGGGACGTCGAGAAT
GGGCTCTATCCCACGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCC
GCAAACGCTGCGACAGGACACCATCGATATGGAGGAAATACCGCTCAATC
AGACGAACAGCCAGGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTT
GACAAGCACGACTCTGACAGAGATGGGCTGATCAACACGCACGAGCTGAA
GGAACTGATCTCGGATGGCTATTGCCGGGACATTCCCGCCTACATCGCCG
ACCAGATCCTGAAGCGCAGCGATCAGGATAACGACGGCCACCTGGACTTC
GAGGAATTCTATGCGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACAT
GCTGACCCGCTACTGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGG
GCGATGAGCCCGACGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCG
CCGCTCACCATGGTGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGT
GGACGTCATACATTTCCAGGACGATCCCAACTACCAGGATCGCATAGGCG
AGAGCACAAGTGGACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAG
CGCTATGAGGGATGGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCAT
CATGCATCTGATGATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCC
TGGAGCTGGTGCATCACTGGTGGCGCGTGGGTCTGGTCTACCTGGCTGGC
GTGTTAGCCGGTTCCATGGGCACCTCGCTAACCAGTCCTCGCATCTTTCT
AGCGGGCGCATCGGG

BO10391.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1697-PB 1254 rho-4-RB 1..899 17..915 4495 100 Plus
CG1697-PA 1254 rho-4-RA 1..899 17..915 4495 100 Plus
CG1697-PC 855 rho-4-RC 1..500 416..915 2500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4-RB 2345 CG1697-RB 250..1148 17..915 4495 100 Plus
rho-4-RA 2057 CG1697-RA 250..1148 17..915 4495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11604310..11604674 255..619 1825 100 Plus
X 23542271 X 11604736..11605032 619..915 1485 100 Plus
X 23542271 X 11600087..11600326 17..256 1200 100 Plus
X 23542271 X 11589621..11589726 17..122 455 95.3 Plus
X 23542271 X 11591714..11591819 17..122 455 95.3 Plus
X 23542271 X 11595900..11596005 17..122 455 95.3 Plus
X 23542271 X 11587528..11587633 17..122 440 94.3 Plus
X 23542271 X 11593807..11593912 17..122 440 94.3 Plus
X 23542271 X 11597993..11598098 17..122 440 94.3 Plus
Blast to na_te.dros performed on 2015-02-04 04:18:14 has no hits.

BO10391.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:25 Download gff for BO10391.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-4-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:56 Download gff for BO10391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1697-PA 1..899 17..915 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:13 Download gff for BO10391.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 250..1148 17..915 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:26 Download gff for BO10391.5prime
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 250..1148 17..915 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:26 Download gff for BO10391.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11600087..11600326 17..256 100 -> Plus
X 11604312..11604673 257..618 100 -> Plus
X 11604736..11605032 619..915 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:13 Download gff for BO10391.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11494120..11494359 17..256 100 -> Plus
arm_X 11498345..11498706 257..618 100 -> Plus
arm_X 11498769..11499065 619..915 100   Plus

BO10391.complete Sequence

1285 bp (1285 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631728

> BO10391.complete
GAAGTTATCAGTCGACATGCCCGTGAAAACAGTGAATCGCCAGCAGAGCC
AAACGCCCGCCCAACAACTGCAATTGCAGCAGCAGCGGGACGTCGAGAAT
GGGCTCTATCCCACGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCC
GCAAACGCTGCGACAGGACACCATCGATATGGAGGAAATACCGCTCAATC
AGACGAACAGCCAGGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTT
GACAAGCACGACTCTGACAGAGATGGGCTGATCAACACGCACGAGCTGAA
GGAACTGATCTCGGATGGCTATTGCCGGGACATTCCCGCCTACATCGCCG
ACCAGATCCTGAAGCGCAGCGATCAGGATAACGACGGCCACCTGGACTTC
GAGGAATTCTATGCGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACAT
GCTGACCCGCTACTGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGG
GCGATGAGCCCGACGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCG
CCGCTCACCATGGTGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGT
GGACGTCATACATTTCCAGGACGATCCCAACTACCAGGATCGCATAGGCG
AGAGCACAAGTGGACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAG
CGCTATGAGGGATGGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCAT
CATGCATCTGATGATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCC
TGGAGCTGGTGCATCACTGGTGGCGCGTGGGTCTGGTCTACCTGGCTGGC
GTGTTAGCCGGTTCCATGGGCACCTCGCTAACCAGTCCTCGCATCTTTCT
AGCGGGCGCATCGGGTGGAGTATACGCACTGATCACAGCCCACATTGCCA
CGATAATTATGAACTACTCGGAAATGGAGTACGCCATTGTCCAGCTGCTG
GCCTTTCTGGTCTTCTGCTTCACCGACTTGGGTACCTCGGTGTACCGCCA
CTTGACCGACCAGCACGATCAGATTGGCTATGTGGCGCATTTGTCCGGTG
CCGTCGCCGGTTTGCTGGTGGGGATCGGTGTGCTGCGCAATTTGGAGGTG
CGGCGATGGGAGCGCATTCTCTGGTGGGTCGCCGTCATCGTTTACTTTGC
CCTCATGACCACTGGCATCATCATACACGTGTTTGTTCCCGACTACTTCC
CAAAACAGGAGTACAACGCAAGCTTTCTAGACCAT

BO10391.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4-RB 1254 CG1697-PB 1..1251 17..1267 6255 100 Plus
rho-4-RA 1254 CG1697-PA 1..1251 17..1267 6255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4-RB 2345 CG1697-RB 250..1500 17..1267 6255 100 Plus
rho-4-RA 2057 CG1697-RA 250..1500 17..1267 6255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11604310..11604674 255..619 1825 100 Plus
X 23542271 X 11604736..11605078 619..961 1715 100 Plus
X 23542271 X 11605137..11605443 961..1267 1535 100 Plus
X 23542271 X 11600087..11600326 17..256 1200 100 Plus
X 23542271 X 11589621..11589726 17..122 455 95.3 Plus
X 23542271 X 11591714..11591819 17..122 455 95.3 Plus
X 23542271 X 11595900..11596005 17..122 455 95.3 Plus
X 23542271 X 11587528..11587633 17..122 440 94.3 Plus
X 23542271 X 11593807..11593912 17..122 440 94.3 Plus
X 23542271 X 11597993..11598098 17..122 440 94.3 Plus
Blast to na_te.dros performed on 2014-11-27 13:57:31 has no hits.

BO10391.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:59 Download gff for BO10391.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 1..1254 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:37 Download gff for BO10391.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 247..1501 17..1273 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:47 Download gff for BO10391.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 250..1500 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:59 Download gff for BO10391.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 247..1501 17..1273 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:05 Download gff for BO10391.complete
Subject Subject Range Query Range Percent Splice Strand
rho-4-RA 250..1500 17..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:05 Download gff for BO10391.complete
Subject Subject Range Query Range Percent Splice Strand
X 11600087..11600326 17..256 100 -> Plus
X 11604312..11604673 257..618 100 -> Plus
X 11604736..11605078 619..961 100 -> Plus
X 11605138..11605443 962..1269 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:47 Download gff for BO10391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11494120..11494359 17..256 100 -> Plus
arm_X 11498345..11498706 257..618 100 -> Plus
arm_X 11498769..11499111 619..961 100 -> Plus
arm_X 11499171..11499476 962..1269 99   Plus

BO10391.pep Sequence

Translation from 16 to 1285

> BO10391.pep
MPVKTVNRQQSQTPAQQLQLQQQRDVENGLYPTIPAERRSPPSRPQTLRQ
DTIDMEEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELISD
GYCRDIPAYIADQILKRSDQDNDGHLDFEEFYAMSLRHKWMVRNMLTRYC
RYVVPPPKPLEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHF
QDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMM
NLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASG
GVYALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVYRHLTDQH
DQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTG
IIIHVFVPDYFPKQEYNASFLDH

BO10391.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
rho-4-PB 417 CG1697-PB 1..417 1..417 2210 100 Plus
rho-4-PA 417 CG1697-PA 1..417 1..417 2210 100 Plus
stet-PB 485 CG33166-PB 66..459 54..405 501 31.1 Plus
stet-PA 330 CG33166-PA 57..304 169..405 492 37.6 Plus
rho-PB 355 CG1004-PB 102..328 179..405 472 40.5 Plus