Clone Sequence Records
BO10391.3prime Sequence
959 bp (860 high quality bases) assembled on 2006-04-19
> BO10391.3prime
ATGGTCTAGAAAGCTTGCGTTGTACTCCTGTTTTGGGAAGTAGTCGGGAA
CAAACACGTGTATGATGATGCCAGTGGTCATGAGGGCAAAGTAAACGATG
ACGGCGACCCACCAGAGAATGCGCTCCCATCGCCGCACCTCCAAATTGCG
CAGCACACCGATCCCCACCAGCAAACCGGCGACGGCACCGGACAAATGCG
CCACATAGCCAATCTGATCGTGCTGGTCGGTCAAGTGGCGGTACACCGAG
GTACCCAAGTCGGTGAAGCAGAAGACCAGAAAGGCCAGCAGCTGGACAAT
GGCGTACTCCATTTCCGAGTAGTTCATAATTATCGTGGCAATGTGGGCTG
TGATCAGTGCGTATACTCCACCCGATGCGCCCGCTAGAAAGATGCGAGGA
CTGGTTAGCGAGGTGCCCATGGAACCGGCTAACACGCCAGCCAGGTAGAC
CAGACCCACGCGCCACCAGTGATGCACCAGCTCCAGGGCGATGCCCAGAA
AGATCTGGATAATCAGGTTCATCATCAGATGCATGATGCCCACGTGAACG
AACATGTAGCTAACAAAGCGCCATCCCTCATAGCGCTTGTACGGATTGTA
GATGAACAGGGTGGCCGCTGGTCCACTTGTGCTCTCGCCTATGCGATCCT
GGTAGTTGGGATCGTCCTGGAAATGTATGACGTCCACGAGGAACATGATT
ATCTCGATAATCGAGAAGAGCACCATGGTGAGCGGCGGCGGGCAGATGGA
CATTTGCTTCTCGTAGGCACCGTCGGGCTCATCGCCCTCTAAGGGCTTCG
GTGGCGGCACAACGTAGCGACAGTAGCGGGTCAGCATGTTGCGCACCATC
CACTTGTGGCGCAGGGACATCGCATAGAATTCCTCGAAGTCCAGGTGGCC
GTCGTTATCCTGATCGCTGCGCTTCAGGATCTGGTCGGCGATGTAGGCGG
GGATGTCCC
BO10391.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1697-PB | 1254 | rho-4-RB | 311..1251 | 959..19 | 4680 | 99.8 | Minus |
CG1697-PA | 1254 | rho-4-RA | 311..1251 | 959..19 | 4680 | 99.8 | Minus |
CG1697-PC | 855 | rho-4-RC | 1..852 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-4-RB | 2345 | CG1697-RB | 560..1500 | 959..19 | 4690 | 99.9 | Minus |
rho-4-RA | 2057 | CG1697-RA | 560..1500 | 959..19 | 4690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11604736..11605078 | 667..325 | 1715 | 100 | Minus |
X | 23542271 | X | 11605137..11605443 | 325..19 | 1535 | 100 | Minus |
X | 23542271 | X | 11604382..11604674 | 959..667 | 1450 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:06:49 has no hits.
BO10391.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:24 Download gff for
BO10391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-PA | 311..1254 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:55 Download gff for
BO10391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1697-PA | 311..1254 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:13:23 Download gff for
BO10391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 560..1504 | 13..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:25 Download gff for
BO10391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 560..1504 | 13..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:25 Download gff for
BO10391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11604382..11604673 | 668..959 | 99 | -> | Minus |
X | 11604736..11605078 | 325..667 | 100 | -> | Minus |
X | 11605138..11605447 | 13..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:13:23 Download gff for
BO10391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11499171..11499480 | 13..324 | 99 | | Minus |
arm_X | 11498415..11498706 | 668..959 | 99 | -> | Minus |
arm_X | 11498769..11499111 | 325..667 | 100 | -> | Minus |
BO10391.5prime Sequence
915 bp (825 high quality bases) assembled on 2006-04-19
> BO10391.5prime
GAAGTTATCAGTCGACATGCCCGTGAAAACAGTGAATCGCCAGCAGAGCC
AAACGCCCGCCCAACAACTGCAATTGCAGCAGCAGCGGGACGTCGAGAAT
GGGCTCTATCCCACGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCC
GCAAACGCTGCGACAGGACACCATCGATATGGAGGAAATACCGCTCAATC
AGACGAACAGCCAGGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTT
GACAAGCACGACTCTGACAGAGATGGGCTGATCAACACGCACGAGCTGAA
GGAACTGATCTCGGATGGCTATTGCCGGGACATTCCCGCCTACATCGCCG
ACCAGATCCTGAAGCGCAGCGATCAGGATAACGACGGCCACCTGGACTTC
GAGGAATTCTATGCGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACAT
GCTGACCCGCTACTGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGG
GCGATGAGCCCGACGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCG
CCGCTCACCATGGTGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGT
GGACGTCATACATTTCCAGGACGATCCCAACTACCAGGATCGCATAGGCG
AGAGCACAAGTGGACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAG
CGCTATGAGGGATGGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCAT
CATGCATCTGATGATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCC
TGGAGCTGGTGCATCACTGGTGGCGCGTGGGTCTGGTCTACCTGGCTGGC
GTGTTAGCCGGTTCCATGGGCACCTCGCTAACCAGTCCTCGCATCTTTCT
AGCGGGCGCATCGGG
BO10391.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1697-PB | 1254 | rho-4-RB | 1..899 | 17..915 | 4495 | 100 | Plus |
CG1697-PA | 1254 | rho-4-RA | 1..899 | 17..915 | 4495 | 100 | Plus |
CG1697-PC | 855 | rho-4-RC | 1..500 | 416..915 | 2500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-4-RB | 2345 | CG1697-RB | 250..1148 | 17..915 | 4495 | 100 | Plus |
rho-4-RA | 2057 | CG1697-RA | 250..1148 | 17..915 | 4495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11604310..11604674 | 255..619 | 1825 | 100 | Plus |
X | 23542271 | X | 11604736..11605032 | 619..915 | 1485 | 100 | Plus |
X | 23542271 | X | 11600087..11600326 | 17..256 | 1200 | 100 | Plus |
X | 23542271 | X | 11589621..11589726 | 17..122 | 455 | 95.3 | Plus |
X | 23542271 | X | 11591714..11591819 | 17..122 | 455 | 95.3 | Plus |
X | 23542271 | X | 11595900..11596005 | 17..122 | 455 | 95.3 | Plus |
X | 23542271 | X | 11587528..11587633 | 17..122 | 440 | 94.3 | Plus |
X | 23542271 | X | 11593807..11593912 | 17..122 | 440 | 94.3 | Plus |
X | 23542271 | X | 11597993..11598098 | 17..122 | 440 | 94.3 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:18:14 has no hits.
BO10391.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:25 Download gff for
BO10391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:51:56 Download gff for
BO10391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1697-PA | 1..899 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:13 Download gff for
BO10391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 250..1148 | 17..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:26 Download gff for
BO10391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 250..1148 | 17..915 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:26 Download gff for
BO10391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11600087..11600326 | 17..256 | 100 | -> | Plus |
X | 11604312..11604673 | 257..618 | 100 | -> | Plus |
X | 11604736..11605032 | 619..915 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:13 Download gff for
BO10391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11494120..11494359 | 17..256 | 100 | -> | Plus |
arm_X | 11498345..11498706 | 257..618 | 100 | -> | Plus |
arm_X | 11498769..11499065 | 619..915 | 100 | | Plus |
BO10391.complete Sequence
1285 bp (1285 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631728
> BO10391.complete
GAAGTTATCAGTCGACATGCCCGTGAAAACAGTGAATCGCCAGCAGAGCC
AAACGCCCGCCCAACAACTGCAATTGCAGCAGCAGCGGGACGTCGAGAAT
GGGCTCTATCCCACGATTCCGGCCGAGCGACGATCGCCCCCCTCGCGTCC
GCAAACGCTGCGACAGGACACCATCGATATGGAGGAAATACCGCTCAATC
AGACGAACAGCCAGGAGCCAGAGGATCGGCGCAAAATGCACGAGATATTT
GACAAGCACGACTCTGACAGAGATGGGCTGATCAACACGCACGAGCTGAA
GGAACTGATCTCGGATGGCTATTGCCGGGACATTCCCGCCTACATCGCCG
ACCAGATCCTGAAGCGCAGCGATCAGGATAACGACGGCCACCTGGACTTC
GAGGAATTCTATGCGATGTCCCTGCGCCACAAGTGGATGGTGCGCAACAT
GCTGACCCGCTACTGTCGCTACGTTGTGCCGCCACCGAAGCCCTTAGAGG
GCGATGAGCCCGACGGTGCCTACGAGAAGCAAATGTCCATCTGCCCGCCG
CCGCTCACCATGGTGCTCTTCTCGATTATCGAGATAATCATGTTCCTCGT
GGACGTCATACATTTCCAGGACGATCCCAACTACCAGGATCGCATAGGCG
AGAGCACAAGTGGACCAGCGGCCACCCTGTTCATCTACAATCCGTACAAG
CGCTATGAGGGATGGCGCTTTGTTAGCTACATGTTCGTTCACGTGGGCAT
CATGCATCTGATGATGAACCTGATTATCCAGATCTTTCTGGGCATCGCCC
TGGAGCTGGTGCATCACTGGTGGCGCGTGGGTCTGGTCTACCTGGCTGGC
GTGTTAGCCGGTTCCATGGGCACCTCGCTAACCAGTCCTCGCATCTTTCT
AGCGGGCGCATCGGGTGGAGTATACGCACTGATCACAGCCCACATTGCCA
CGATAATTATGAACTACTCGGAAATGGAGTACGCCATTGTCCAGCTGCTG
GCCTTTCTGGTCTTCTGCTTCACCGACTTGGGTACCTCGGTGTACCGCCA
CTTGACCGACCAGCACGATCAGATTGGCTATGTGGCGCATTTGTCCGGTG
CCGTCGCCGGTTTGCTGGTGGGGATCGGTGTGCTGCGCAATTTGGAGGTG
CGGCGATGGGAGCGCATTCTCTGGTGGGTCGCCGTCATCGTTTACTTTGC
CCTCATGACCACTGGCATCATCATACACGTGTTTGTTCCCGACTACTTCC
CAAAACAGGAGTACAACGCAAGCTTTCTAGACCAT
BO10391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-4-RB | 1254 | CG1697-PB | 1..1251 | 17..1267 | 6255 | 100 | Plus |
rho-4-RA | 1254 | CG1697-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-4-RB | 2345 | CG1697-RB | 250..1500 | 17..1267 | 6255 | 100 | Plus |
rho-4-RA | 2057 | CG1697-RA | 250..1500 | 17..1267 | 6255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11604310..11604674 | 255..619 | 1825 | 100 | Plus |
X | 23542271 | X | 11604736..11605078 | 619..961 | 1715 | 100 | Plus |
X | 23542271 | X | 11605137..11605443 | 961..1267 | 1535 | 100 | Plus |
X | 23542271 | X | 11600087..11600326 | 17..256 | 1200 | 100 | Plus |
X | 23542271 | X | 11589621..11589726 | 17..122 | 455 | 95.3 | Plus |
X | 23542271 | X | 11591714..11591819 | 17..122 | 455 | 95.3 | Plus |
X | 23542271 | X | 11595900..11596005 | 17..122 | 455 | 95.3 | Plus |
X | 23542271 | X | 11587528..11587633 | 17..122 | 440 | 94.3 | Plus |
X | 23542271 | X | 11593807..11593912 | 17..122 | 440 | 94.3 | Plus |
X | 23542271 | X | 11597993..11598098 | 17..122 | 440 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:57:31 has no hits.
BO10391.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:59 Download gff for
BO10391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 1..1254 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:37 Download gff for
BO10391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 247..1501 | 17..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:47 Download gff for
BO10391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 250..1500 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:59 Download gff for
BO10391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 247..1501 | 17..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:05 Download gff for
BO10391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rho-4-RA | 250..1500 | 17..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:05 Download gff for
BO10391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11600087..11600326 | 17..256 | 100 | -> | Plus |
X | 11604312..11604673 | 257..618 | 100 | -> | Plus |
X | 11604736..11605078 | 619..961 | 100 | -> | Plus |
X | 11605138..11605443 | 962..1269 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:47 Download gff for
BO10391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11494120..11494359 | 17..256 | 100 | -> | Plus |
arm_X | 11498345..11498706 | 257..618 | 100 | -> | Plus |
arm_X | 11498769..11499111 | 619..961 | 100 | -> | Plus |
arm_X | 11499171..11499476 | 962..1269 | 99 | | Plus |
BO10391.pep Sequence
Translation from 16 to 1285
> BO10391.pep
MPVKTVNRQQSQTPAQQLQLQQQRDVENGLYPTIPAERRSPPSRPQTLRQ
DTIDMEEIPLNQTNSQEPEDRRKMHEIFDKHDSDRDGLINTHELKELISD
GYCRDIPAYIADQILKRSDQDNDGHLDFEEFYAMSLRHKWMVRNMLTRYC
RYVVPPPKPLEGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHF
QDDPNYQDRIGESTSGPAATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMM
NLIIQIFLGIALELVHHWWRVGLVYLAGVLAGSMGTSLTSPRIFLAGASG
GVYALITAHIATIIMNYSEMEYAIVQLLAFLVFCFTDLGTSVYRHLTDQH
DQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIVYFALMTTG
IIIHVFVPDYFPKQEYNASFLDH
BO10391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rho-4-PB | 417 | CG1697-PB | 1..417 | 1..417 | 2210 | 100 | Plus |
rho-4-PA | 417 | CG1697-PA | 1..417 | 1..417 | 2210 | 100 | Plus |
stet-PB | 485 | CG33166-PB | 66..459 | 54..405 | 501 | 31.1 | Plus |
stet-PA | 330 | CG33166-PA | 57..304 | 169..405 | 492 | 37.6 | Plus |
rho-PB | 355 | CG1004-PB | 102..328 | 179..405 | 472 | 40.5 | Plus |