Clone Sequence Records
BO10394.3prime Sequence
937 bp (788 high quality bases) assembled on 2006-04-19
> BO10394.3prime
ATGGTCTAGAAAGCTTGCGTCCCTCGTCAAATTGCTAGCCACATGGTTAA
TCCTGCTATCCGGTGCCTCCTCGCAGACGGGCGTCGATGGCACCGAAAGC
CAGGGCATGGTGTTTGGGATGGGTGACGCAGGCGCATAGCTGGACTCCAG
ATCCAATCGCAGTTTGGCGGGCGAATTCCGCTTGAACAGAGCCAACTGCC
GCGTGGGTGACAGCAGATTTGGCTTGCTGATTGCGCGGGGTGATACGGAT
GAGCTGGTGGACTGCAGCAGTGAGCAGATGCCACTGCTGCTGCTTGTGGA
GCTGGGTGAATCTAGTTCTGAAACCGACGACGCTGCCGCCGAAGTGCTGG
GCGCCTCGTCATCCGGGGTAATTGGCGGCGAGGTCAATCTGGATGAGCAG
TTACTACCCGCCAGGCTGCCGGAGCCGCTGTCCACATCATCGTAATCAAA
CCCATCCTCGTCCATAGCCTCGCTATCCGACTTGGATTTACCCCGTTCCC
GCTGTTCCCGCTTCTCCTCCTCCTCTGGCTGCTCCACCAGTTGACTAGAT
TGGGTGCTTAATCCCACAGAAGATGACGAAGGATTGCTAGGACTATTCAG
GTGCGGGGTTGCGGGCGCCAGGACTCCGCTCTTGCGCAAATTCTGCTCCA
GCTCCAGCAGCTGGCCCATGAAGTTCAGATTGGGCGAGATGATCGGCCGG
GCCACTTTCACCAGCTTGTAGGCCTCCAGCAGGGAGAGCGACTTGTACCG
CATGACGTAGGCGATGGCAATGGTGGCGCTCCGCGAAATCCCCGCGTGGC
AGTGCAGCAGCACTCGGGGACCCGTTTTCCGTGCATCTTCGATAAAGTCG
TAGGCCTCCTGGAAGTACTGCTTGATGTTCTGATGTGGCGTATCGCTGGC
AGGTATTTGCATGTACTTGAGGCCCTGCAGATGGCTC
BO10394.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7850-PA | 1431 | puc-RA | 510..1428 | 937..19 | 4570 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
puc-RB | 2407 | CG7850-RB | 527..1445 | 937..19 | 4580 | 99.9 | Minus |
puc-RA | 2919 | CG7850-RA | 1039..1957 | 937..19 | 4580 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8120511..8121332 | 840..19 | 4095 | 99.9 | Minus |
3R | 32079331 | 3R | 8111204..8111301 | 937..840 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:52:53 has no hits.
BO10394.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:31 Download gff for
BO10394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-PA | 510..1431 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:03 Download gff for
BO10394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7850-PA | 510..1431 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:07 Download gff for
BO10394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 1039..1957 | 19..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:03 Download gff for
BO10394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 1039..1957 | 19..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:03 Download gff for
BO10394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8111204..8111301 | 840..937 | 100 | -> | Minus |
3R | 8120512..8121332 | 19..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:07 Download gff for
BO10394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3936926..3937023 | 840..937 | 100 | -> | Minus |
arm_3R | 3946234..3947054 | 19..839 | 99 | | Minus |
BO10394.5prime Sequence
818 bp (817 high quality bases) assembled on 2006-04-19
> BO10394.5prime
GAAGTTATCAGTCGACATGTGTGTGAATCGAGAAACGCAGAGCAGCAGCA
ACAATAATAGCAACAACACTACAACGGCAACGTCAACAGCACGCAACAAC
AACAGCCACAACGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAG
TCATATACAAAGTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTC
TTCTGTTATTTATGCCAATCCAAAATACCAACAACAACAATCGCATTGGT
GCCAATCAGAAGGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATG
TGACGAAGTGACATCGACGACGTCATCATCCACGGCAATGAACGGCGGCG
GACGGACGCCGGCGCTAACCCGCAGCTGCTCCAGTCCGGCGGTCTACGAT
ATAGAAACACACCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAA
TGGACGCGACGCCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGA
ACGTTACCTGCCAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTAC
ATGCAAATACCTGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTT
CCAGGAGGCCTACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAG
TGCTGCTGCACTGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATC
GCCTACGTCATGCGGTACAAGTCGCTCTCCCTGCTGGAGGCCTACAAGCT
GGTGAAAGTGGCCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCC
AGCTGCTGGAGCTGGAGC
BO10394.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7850-PA | 1431 | puc-RA | 1..802 | 17..818 | 3985 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
puc-RA | 2919 | CG7850-RA | 530..1331 | 17..818 | 3995 | 99.9 | Plus |
puc-RB | 2407 | CG7850-RB | 252..819 | 251..818 | 2825 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8105861..8106095 | 17..251 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 8111076..8111301 | 398..623 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 8120511..8120706 | 623..818 | 980 | 100 | Plus |
3R | 32079331 | 3R | 8108231..8108378 | 251..398 | 725 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:22:35 has no hits.
BO10394.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:32 Download gff for
BO10394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:04 Download gff for
BO10394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7850-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:36:10 Download gff for
BO10394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 530..1331 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:14 Download gff for
BO10394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 530..1331 | 17..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:14 Download gff for
BO10394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8120512..8120706 | 624..818 | 100 | | Plus |
3R | 8105861..8106095 | 17..251 | 100 | -> | Plus |
3R | 8108232..8108378 | 252..398 | 99 | -> | Plus |
3R | 8111077..8111301 | 399..623 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:36:10 Download gff for
BO10394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3936799..3937023 | 399..623 | 100 | -> | Plus |
arm_3R | 3946234..3946428 | 624..818 | 100 | | Plus |
arm_3R | 3931583..3931817 | 17..251 | 100 | -> | Plus |
arm_3R | 3933954..3934100 | 252..398 | 99 | -> | Plus |
BO10394.complete Sequence
1462 bp (1462 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631729
> BO10394.complete
GAAGTTATCAGTCGACATGTGTGTGAATCGAGAAACGCAGAGCAGCAGCA
ACAATAATAGCAACAACACTACAACGGCAACGTCAACAGCACGCAACAAC
AACAGCCACAACGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAG
TCATATACAAAGTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTC
TTCTGTTATTTATGCCAATCCAAAATACCAACAACAACAATCGCATTGGT
GCCAATCAGAAGGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATG
TGACGAAGTGACATCGACGACGTCATCATCCACGGCAATGAACGGCGGCG
GACGGACGCCGGCGCTAACCCGCAGCTGCTCCAGTCCGGCGGTCTACGAT
ATAGAAACACACCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAA
TGGACGCGACGCCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGA
ACGTTACCTGCCAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTAC
ATGCAAATACCTGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTT
CCAGGAGGCCTACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAG
TGCTGCTGCACTGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATC
GCCTACGTCATGCGGTACAAGTCGCTCTCCCTGCTGGAGGCCTACAAGCT
GGTGAAAGTGGCCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCC
AGCTGCTGGAGCTGGAGCAGAATTTGCGCAAGAGCGGAGTCCTGGCGCCC
GCAACCCCGCACCTGAATAGTCCTAGCAATCCTTCGTCATCTTCTGTGGG
ATTAAGCACCCAATCTAGTCAACTGGTGGAGCAGCCAGAGGAGGAGGAGA
AGCGGGAACAGCGGGAACGGGGTAAATCCAAGTCGGATAGCGAGGCTATG
GACGAGGATGGGTTTGATTACGATGATGTGGACAGCGGCTCCGGCAGCCT
GGCGGGTAGTAACTGCTCATCCAGATTGACCTCGCCGCCAATTACCCCGG
ATGACGAGGCGCCCAGCACTTCGGCGGCAGCGTCGTCGGTTTCAGAACTA
GATTCACCCAGCTCCACAAGCAGCAGCAGTGGCATCTGCTCACTGCTGCA
GTCCACCAGCTCATCCGTATCACCCCGCGCAATCAGCAAGCCAAATCTGC
TGTCACCCACGCGGCAGTTGGCTCTGTTCAAGCGGAATTCGCCCGCCAAA
CTGCGATTGGATCTGGAGTCCAGCTATGCGCCTGCGTCACCCATCCCAAA
CACCATGCCCTGGCTTTCGGTGCCATCGACGCCCGTCTGCGAGGAGGCAC
CGGATAGCAGGATTAACCATGTGGCTAGCAATTTGACGAGGGACGCAAGC
TTTCTAGACCAT
BO10394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
puc-RA | 1431 | CG7850-PA | 1..1428 | 17..1444 | 7125 | 99.9 | Plus |
puc-RB | 1110 | CG7850-PB | 1..1107 | 338..1444 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
puc-RA | 2919 | CG7850-RA | 530..1957 | 17..1444 | 7125 | 99.9 | Plus |
puc-RB | 2407 | CG7850-RB | 252..1445 | 251..1444 | 5955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8120511..8121332 | 623..1444 | 4110 | 100 | Plus |
3R | 32079331 | 3R | 8105861..8106095 | 17..251 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 8111076..8111301 | 398..623 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 8108231..8108378 | 251..398 | 725 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:38:11 has no hits.
BO10394.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:01 Download gff for
BO10394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 1..1431 | 17..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:17 Download gff for
BO10394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 527..1954 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:41 Download gff for
BO10394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 530..1957 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:02 Download gff for
BO10394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 527..1954 | 17..1444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:01 Download gff for
BO10394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
puc-RA | 530..1957 | 17..1446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:01 Download gff for
BO10394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8105861..8106095 | 17..251 | 100 | -> | Plus |
3R | 8108232..8108378 | 252..398 | 99 | -> | Plus |
3R | 8111077..8111301 | 399..623 | 100 | -> | Plus |
3R | 8120512..8121332 | 624..1446 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:41 Download gff for
BO10394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3946234..3947054 | 624..1446 | 99 | | Plus |
arm_3R | 3931583..3931817 | 17..251 | 100 | -> | Plus |
arm_3R | 3933954..3934100 | 252..398 | 99 | -> | Plus |
arm_3R | 3936799..3937023 | 399..623 | 100 | -> | Plus |
BO10394.pep Sequence
Translation from 16 to 1462
> BO10394.pep
MCVNRETQSSSNNNSNNTTTATSTARNNNSHNGRCECDGDGDSVSHIQSE
MKMRIKREAPCLLLFMPIQNTNNNNRIGANQKDYPNKRSRENLACDEVTS
TTSSSTAMNGGGRTPALTRSCSSPAVYDIETHPASPVFPHLLLGNGRDAD
DPSSVGANCVLNVTCQSPNESHLQGLKYMQIPASDTPHQNIKQYFQEAYD
FIEDARKTGSRVLLHCHAGISRSATIAIAYVMRYKSLSLLEAYKLVKVAR
PIISPNLNFMGQLLELEQNLRKSGVLAPATPHLNSPSNPSSSSVGLSTQS
SQLVEQPEEEEKREQRERGKSKSDSEAMDEDGFDYDDVDSGSGSLAGSNC
SSRLTSPPITPDDEAPSTSAAASSVSELDSPSSTSSSSGICSLLQSTSSS
VSPRAISKPNLLSPTRQLALFKRNSPAKLRLDLESSYAPASPIPNTMPWL
SVPSTPVCEEAPDSRINHVASNLTRDASFLDH
BO10394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
puc-PA | 476 | CG7850-PA | 1..476 | 1..476 | 2452 | 100 | Plus |
puc-PB | 369 | CG7850-PB | 1..369 | 108..476 | 1886 | 100 | Plus |
Mkp3-PD | 411 | CG14080-PD | 152..357 | 80..271 | 268 | 35.4 | Plus |
Mkp3-PB | 411 | CG14080-PB | 152..357 | 80..271 | 268 | 35.4 | Plus |
Mkp3-PA | 241 | CG14080-PA | 9..187 | 100..271 | 267 | 38 | Plus |