Clone BO10394 Report

Search the DGRC for BO10394

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptpuc-RA
Protein status:BO10394.pep: validated full length
Sequenced Size:1462

Clone Sequence Records

BO10394.3prime Sequence

937 bp (788 high quality bases) assembled on 2006-04-19

> BO10394.3prime
ATGGTCTAGAAAGCTTGCGTCCCTCGTCAAATTGCTAGCCACATGGTTAA
TCCTGCTATCCGGTGCCTCCTCGCAGACGGGCGTCGATGGCACCGAAAGC
CAGGGCATGGTGTTTGGGATGGGTGACGCAGGCGCATAGCTGGACTCCAG
ATCCAATCGCAGTTTGGCGGGCGAATTCCGCTTGAACAGAGCCAACTGCC
GCGTGGGTGACAGCAGATTTGGCTTGCTGATTGCGCGGGGTGATACGGAT
GAGCTGGTGGACTGCAGCAGTGAGCAGATGCCACTGCTGCTGCTTGTGGA
GCTGGGTGAATCTAGTTCTGAAACCGACGACGCTGCCGCCGAAGTGCTGG
GCGCCTCGTCATCCGGGGTAATTGGCGGCGAGGTCAATCTGGATGAGCAG
TTACTACCCGCCAGGCTGCCGGAGCCGCTGTCCACATCATCGTAATCAAA
CCCATCCTCGTCCATAGCCTCGCTATCCGACTTGGATTTACCCCGTTCCC
GCTGTTCCCGCTTCTCCTCCTCCTCTGGCTGCTCCACCAGTTGACTAGAT
TGGGTGCTTAATCCCACAGAAGATGACGAAGGATTGCTAGGACTATTCAG
GTGCGGGGTTGCGGGCGCCAGGACTCCGCTCTTGCGCAAATTCTGCTCCA
GCTCCAGCAGCTGGCCCATGAAGTTCAGATTGGGCGAGATGATCGGCCGG
GCCACTTTCACCAGCTTGTAGGCCTCCAGCAGGGAGAGCGACTTGTACCG
CATGACGTAGGCGATGGCAATGGTGGCGCTCCGCGAAATCCCCGCGTGGC
AGTGCAGCAGCACTCGGGGACCCGTTTTCCGTGCATCTTCGATAAAGTCG
TAGGCCTCCTGGAAGTACTGCTTGATGTTCTGATGTGGCGTATCGCTGGC
AGGTATTTGCATGTACTTGAGGCCCTGCAGATGGCTC

BO10394.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7850-PA 1431 puc-RA 510..1428 937..19 4570 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
puc-RB 2407 CG7850-RB 527..1445 937..19 4580 99.9 Minus
puc-RA 2919 CG7850-RA 1039..1957 937..19 4580 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8120511..8121332 840..19 4095 99.9 Minus
3R 32079331 3R 8111204..8111301 937..840 490 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:52:53 has no hits.

BO10394.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:31 Download gff for BO10394.3prime
Subject Subject Range Query Range Percent Splice Strand
puc-PA 510..1431 16..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:03 Download gff for BO10394.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7850-PA 510..1431 16..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:07 Download gff for BO10394.3prime
Subject Subject Range Query Range Percent Splice Strand
puc-RA 1039..1957 19..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:03 Download gff for BO10394.3prime
Subject Subject Range Query Range Percent Splice Strand
puc-RA 1039..1957 19..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:03 Download gff for BO10394.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8111204..8111301 840..937 100 -> Minus
3R 8120512..8121332 19..839 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:07 Download gff for BO10394.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3936926..3937023 840..937 100 -> Minus
arm_3R 3946234..3947054 19..839 99   Minus

BO10394.5prime Sequence

818 bp (817 high quality bases) assembled on 2006-04-19

> BO10394.5prime
GAAGTTATCAGTCGACATGTGTGTGAATCGAGAAACGCAGAGCAGCAGCA
ACAATAATAGCAACAACACTACAACGGCAACGTCAACAGCACGCAACAAC
AACAGCCACAACGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAG
TCATATACAAAGTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTC
TTCTGTTATTTATGCCAATCCAAAATACCAACAACAACAATCGCATTGGT
GCCAATCAGAAGGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATG
TGACGAAGTGACATCGACGACGTCATCATCCACGGCAATGAACGGCGGCG
GACGGACGCCGGCGCTAACCCGCAGCTGCTCCAGTCCGGCGGTCTACGAT
ATAGAAACACACCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAA
TGGACGCGACGCCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGA
ACGTTACCTGCCAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTAC
ATGCAAATACCTGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTT
CCAGGAGGCCTACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAG
TGCTGCTGCACTGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATC
GCCTACGTCATGCGGTACAAGTCGCTCTCCCTGCTGGAGGCCTACAAGCT
GGTGAAAGTGGCCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCC
AGCTGCTGGAGCTGGAGC

BO10394.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7850-PA 1431 puc-RA 1..802 17..818 3985 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
puc-RA 2919 CG7850-RA 530..1331 17..818 3995 99.9 Plus
puc-RB 2407 CG7850-RB 252..819 251..818 2825 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8105861..8106095 17..251 1175 100 Plus
3R 32079331 3R 8111076..8111301 398..623 1130 100 Plus
3R 32079331 3R 8120511..8120706 623..818 980 100 Plus
3R 32079331 3R 8108231..8108378 251..398 725 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 06:22:35 has no hits.

BO10394.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:32 Download gff for BO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
puc-PA 1..802 17..818 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:04 Download gff for BO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7850-PA 1..802 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:36:10 Download gff for BO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
puc-RA 530..1331 17..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:14 Download gff for BO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
puc-RA 530..1331 17..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:14 Download gff for BO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8120512..8120706 624..818 100   Plus
3R 8105861..8106095 17..251 100 -> Plus
3R 8108232..8108378 252..398 99 -> Plus
3R 8111077..8111301 399..623 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:36:10 Download gff for BO10394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3936799..3937023 399..623 100 -> Plus
arm_3R 3946234..3946428 624..818 100   Plus
arm_3R 3931583..3931817 17..251 100 -> Plus
arm_3R 3933954..3934100 252..398 99 -> Plus

BO10394.complete Sequence

1462 bp (1462 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631729

> BO10394.complete
GAAGTTATCAGTCGACATGTGTGTGAATCGAGAAACGCAGAGCAGCAGCA
ACAATAATAGCAACAACACTACAACGGCAACGTCAACAGCACGCAACAAC
AACAGCCACAACGGACGCTGTGAGTGCGACGGAGACGGCGACAGCGTGAG
TCATATACAAAGTGAAATGAAAATGCGGATAAAGCGAGAAGCGCCGTGTC
TTCTGTTATTTATGCCAATCCAAAATACCAACAACAACAATCGCATTGGT
GCCAATCAGAAGGACTATCCCAACAAGCGGTCCAGGGAGAATCTGGCATG
TGACGAAGTGACATCGACGACGTCATCATCCACGGCAATGAACGGCGGCG
GACGGACGCCGGCGCTAACCCGCAGCTGCTCCAGTCCGGCGGTCTACGAT
ATAGAAACACACCCCGCCTCGCCCGTTTTCCCGCATCTATTGCTGGGCAA
TGGACGCGACGCCGACGATCCCAGCAGCGTGGGCGCCAACTGTGTGCTGA
ACGTTACCTGCCAAAGTCCCAATGAGAGCCATCTGCAGGGCCTCAAGTAC
ATGCAAATACCTGCCAGCGATACGCCACATCAGAACATCAAGCAGTACTT
CCAGGAGGCCTACGACTTTATCGAAGATGCACGGAAAACGGGTTCCCGAG
TGCTGCTGCACTGCCACGCGGGGATTTCGCGGAGCGCCACCATTGCCATC
GCCTACGTCATGCGGTACAAGTCGCTCTCCCTGCTGGAGGCCTACAAGCT
GGTGAAAGTGGCCCGGCCGATCATCTCGCCCAATCTGAACTTCATGGGCC
AGCTGCTGGAGCTGGAGCAGAATTTGCGCAAGAGCGGAGTCCTGGCGCCC
GCAACCCCGCACCTGAATAGTCCTAGCAATCCTTCGTCATCTTCTGTGGG
ATTAAGCACCCAATCTAGTCAACTGGTGGAGCAGCCAGAGGAGGAGGAGA
AGCGGGAACAGCGGGAACGGGGTAAATCCAAGTCGGATAGCGAGGCTATG
GACGAGGATGGGTTTGATTACGATGATGTGGACAGCGGCTCCGGCAGCCT
GGCGGGTAGTAACTGCTCATCCAGATTGACCTCGCCGCCAATTACCCCGG
ATGACGAGGCGCCCAGCACTTCGGCGGCAGCGTCGTCGGTTTCAGAACTA
GATTCACCCAGCTCCACAAGCAGCAGCAGTGGCATCTGCTCACTGCTGCA
GTCCACCAGCTCATCCGTATCACCCCGCGCAATCAGCAAGCCAAATCTGC
TGTCACCCACGCGGCAGTTGGCTCTGTTCAAGCGGAATTCGCCCGCCAAA
CTGCGATTGGATCTGGAGTCCAGCTATGCGCCTGCGTCACCCATCCCAAA
CACCATGCCCTGGCTTTCGGTGCCATCGACGCCCGTCTGCGAGGAGGCAC
CGGATAGCAGGATTAACCATGTGGCTAGCAATTTGACGAGGGACGCAAGC
TTTCTAGACCAT

BO10394.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
puc-RA 1431 CG7850-PA 1..1428 17..1444 7125 99.9 Plus
puc-RB 1110 CG7850-PB 1..1107 338..1444 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
puc-RA 2919 CG7850-RA 530..1957 17..1444 7125 99.9 Plus
puc-RB 2407 CG7850-RB 252..1445 251..1444 5955 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8120511..8121332 623..1444 4110 100 Plus
3R 32079331 3R 8105861..8106095 17..251 1175 100 Plus
3R 32079331 3R 8111076..8111301 398..623 1130 100 Plus
3R 32079331 3R 8108231..8108378 251..398 725 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 08:38:11 has no hits.

BO10394.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:01 Download gff for BO10394.complete
Subject Subject Range Query Range Percent Splice Strand
puc-RA 1..1431 17..1447 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:17 Download gff for BO10394.complete
Subject Subject Range Query Range Percent Splice Strand
puc-RA 527..1954 17..1446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:41 Download gff for BO10394.complete
Subject Subject Range Query Range Percent Splice Strand
puc-RA 530..1957 17..1446 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:02 Download gff for BO10394.complete
Subject Subject Range Query Range Percent Splice Strand
puc-RA 527..1954 17..1444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:01 Download gff for BO10394.complete
Subject Subject Range Query Range Percent Splice Strand
puc-RA 530..1957 17..1446 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:01 Download gff for BO10394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8105861..8106095 17..251 100 -> Plus
3R 8108232..8108378 252..398 99 -> Plus
3R 8111077..8111301 399..623 100 -> Plus
3R 8120512..8121332 624..1446 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:41 Download gff for BO10394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3946234..3947054 624..1446 99   Plus
arm_3R 3931583..3931817 17..251 100 -> Plus
arm_3R 3933954..3934100 252..398 99 -> Plus
arm_3R 3936799..3937023 399..623 100 -> Plus

BO10394.pep Sequence

Translation from 16 to 1462

> BO10394.pep
MCVNRETQSSSNNNSNNTTTATSTARNNNSHNGRCECDGDGDSVSHIQSE
MKMRIKREAPCLLLFMPIQNTNNNNRIGANQKDYPNKRSRENLACDEVTS
TTSSSTAMNGGGRTPALTRSCSSPAVYDIETHPASPVFPHLLLGNGRDAD
DPSSVGANCVLNVTCQSPNESHLQGLKYMQIPASDTPHQNIKQYFQEAYD
FIEDARKTGSRVLLHCHAGISRSATIAIAYVMRYKSLSLLEAYKLVKVAR
PIISPNLNFMGQLLELEQNLRKSGVLAPATPHLNSPSNPSSSSVGLSTQS
SQLVEQPEEEEKREQRERGKSKSDSEAMDEDGFDYDDVDSGSGSLAGSNC
SSRLTSPPITPDDEAPSTSAAASSVSELDSPSSTSSSSGICSLLQSTSSS
VSPRAISKPNLLSPTRQLALFKRNSPAKLRLDLESSYAPASPIPNTMPWL
SVPSTPVCEEAPDSRINHVASNLTRDASFLDH

BO10394.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
puc-PA 476 CG7850-PA 1..476 1..476 2452 100 Plus
puc-PB 369 CG7850-PB 1..369 108..476 1886 100 Plus
Mkp3-PD 411 CG14080-PD 152..357 80..271 268 35.4 Plus
Mkp3-PB 411 CG14080-PB 152..357 80..271 268 35.4 Plus
Mkp3-PA 241 CG14080-PA 9..187 100..271 267 38 Plus