Clone Sequence Records
BO10395.3prime Sequence
827 bp (826 high quality bases) assembled on 2006-04-19
> BO10395.3prime
ATGGTCTAGAAAGCTTGCTACGTAGGTGCCGTTCCACCGCTGACACCACT
CCAGCGCATACTCGTAGCCCAGGAAAGTGGCGGCATTGAAGGGAACCGCC
CGCGCCACCAGCATCCAGCTGCCGCGGAAGATGCTCCTCCAGCCGTAGGC
TCTGTACTGCACCCGCACGCAATGGAAGATGCCCCGGTACTTGTGATTCT
CGTCCGCCTGCATCAGCGTCTTGACCACGTCGAACGGAATGACACACACC
CACGAGATGACTCCCGCCCAGGCGCCGGCCAGCGTGGTCACCAGCAGGTT
CACACTGGATCCGTCCGACTGACTGCGTCGCCGGCGCACAAAGTCCCGCC
TGTCCATGTAGTCAACGCCCTGGCGATAGGCCAGCATATAGATTCCATAG
GGCAGGACGTCGCGGCACATCATGGGCAAAAGGCCGCGATAGAGCCCCGA
GATGCCATCAGTCTTGAGTATCCTTTTGAACGTGCCAAAGGCGGTCCTTC
TCTGGCCATAGAGATAGTCACTGTAATAAGTGGCTGTCTGCAGGCGAACC
TTGATCAGCTCCATGGGACAGGCGATGAAGGACTGCACGAATCCCGCCAC
AGAGCCCGCCAGGAACATGTTGTGGTACTCCAGCTGCTCCCGCTGGTAGT
CACTGTGGCACACCTTTCTCAGCTGCCTCAGATGGTTTCCATAGATGCCG
AANAGCAGCGAGTTGATCGCTCCCGTCGAGATGAACGGGAAGAACATGCC
CCTGTAGAAGCCGTTGACCCCATTATTTCTGCTGTAGATCTGTTGAATGG
CTGTCACAACGGATGAATTTGAGGCCT
BO10395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-PA | 912 | CG5646-RA | 101..909 | 827..19 | 3951 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 1273 | CG5646-RA | 200..1008 | 827..19 | 3989 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27559644..27560038 | 19..413 | 1960 | 99.7 | Plus |
3R | 32079331 | 3R | 27560274..27560515 | 528..769 | 1184 | 99.2 | Plus |
3R | 32079331 | 3R | 27560100..27560214 | 413..527 | 560 | 99.1 | Plus |
3R | 32079331 | 3R | 27560761..27560821 | 767..827 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:43:50 has no hits.
BO10395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:33 Download gff for
BO10395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 101..912 | 16..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:06 Download gff for
BO10395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 101..912 | 16..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:53:42 Download gff for
BO10395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 200..1008 | 19..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:59 Download gff for
BO10395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 200..1008 | 19..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:59 Download gff for
BO10395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27559644..27560037 | 19..412 | 99 | <- | Plus |
3R | 27560100..27560214 | 413..527 | 99 | <- | Plus |
3R | 27560274..27560514 | 528..768 | 99 | <- | Plus |
3R | 27560763..27560821 | 769..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:53:42 Download gff for
BO10395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23385366..23385759 | 19..412 | 99 | <- | Plus |
arm_3R | 23385822..23385936 | 413..527 | 99 | <- | Plus |
arm_3R | 23385996..23386236 | 528..768 | 99 | <- | Plus |
arm_3R | 23386485..23386543 | 769..827 | 100 | | Plus |
BO10395.5prime Sequence
876 bp (778 high quality bases) assembled on 2006-04-19
> BO10395.5prime
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCTTCCGCGGCAGCTGGATGCTGGTGGCGCGGGCGGTT
TCCTTCAATGCCGCCACTTTCCTGGG
BO10395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-PA | 912 | CG5646-RA | 1..860 | 17..876 | 4150 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 1273 | CG5646-RA | 99..959 | 16..876 | 4215 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27559693..27560038 | 876..531 | 1700 | 99.4 | Minus |
3R | 32079331 | 3R | 27560274..27560515 | 416..175 | 1195 | 99.6 | Minus |
3R | 32079331 | 3R | 27560761..27560876 | 177..62 | 565 | 99.1 | Minus |
3R | 32079331 | 3R | 27560100..27560214 | 531..417 | 560 | 99.1 | Minus |
3R | 32079331 | 3R | 27561172..27561221 | 65..16 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:07:37 has no hits.
BO10395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:34 Download gff for
BO10395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:07 Download gff for
BO10395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:30 Download gff for
BO10395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 95..959 | 9..876 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:10 Download gff for
BO10395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 95..959 | 9..876 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:10 Download gff for
BO10395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27559693..27560037 | 532..876 | 99 | <- | Minus |
3R | 27560100..27560214 | 417..531 | 99 | <- | Minus |
3R | 27560274..27560514 | 176..416 | 99 | <- | Minus |
3R | 27560763..27560875 | 63..175 | 99 | <- | Minus |
3R | 27561175..27561225 | 9..62 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:30 Download gff for
BO10395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23386897..23386947 | 9..62 | 92 | | Minus |
arm_3R | 23385415..23385759 | 532..876 | 99 | <- | Minus |
arm_3R | 23385822..23385936 | 417..531 | 99 | <- | Minus |
arm_3R | 23385996..23386236 | 176..416 | 99 | <- | Minus |
arm_3R | 23386485..23386597 | 63..175 | 99 | <- | Minus |
BO10395.complete Sequence
943 bp (943 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631730
> BO10395.complete
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCTTCCGCGGCAGCTGGATGCTGGTGGCGCGGGCGGTT
CCCTTCAATGCCGCCACTTTCCTGGGCTACGAGTATGCGCTGGAGTGGTG
TCAGCGGTGGAACGGCACCTACGTAGCAAGCTTTCTAGACCAT
BO10395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 912 | CG5646-PA | 1..909 | 17..925 | 4470 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-RA | 1273 | CG5646-RA | 99..1008 | 16..925 | 4475 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27559644..27560038 | 925..531 | 1960 | 99.7 | Minus |
3R | 32079331 | 3R | 27560274..27560515 | 416..175 | 1195 | 99.6 | Minus |
3R | 32079331 | 3R | 27560761..27560876 | 177..62 | 565 | 99.1 | Minus |
3R | 32079331 | 3R | 27560100..27560214 | 531..417 | 560 | 99.1 | Minus |
3R | 32079331 | 3R | 27561172..27561221 | 65..16 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:49:45 has no hits.
BO10395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:13 Download gff for
BO10395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:41 Download gff for
BO10395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 76..989 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:03 Download gff for
BO10395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 100..1008 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:13 Download gff for
BO10395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 76..989 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:24 Download gff for
BO10395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5646-RA | 100..1008 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:24 Download gff for
BO10395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27560274..27560514 | 176..416 | 99 | <- | Minus |
3R | 27560763..27560875 | 63..175 | 99 | <- | Minus |
3R | 27561175..27561220 | 17..62 | 97 | | Minus |
3R | 27559640..27560037 | 532..927 | 99 | <- | Minus |
3R | 27560100..27560214 | 417..531 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:03 Download gff for
BO10395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23385362..23385759 | 532..927 | 99 | <- | Minus |
arm_3R | 23385822..23385936 | 417..531 | 99 | <- | Minus |
arm_3R | 23385996..23386236 | 176..416 | 99 | <- | Minus |
arm_3R | 23386485..23386597 | 63..175 | 99 | <- | Minus |
arm_3R | 23386897..23386942 | 17..62 | 97 | | Minus |
BO10395.pep Sequence
Translation from 16 to 943
> BO10395.pep
MKWENYCDFVAGCFGGACGVLVAHPLDTIKVWQQASNSSVVTAIQQIYSR
NNGVNGFYRGMFFPFISTGAINSLLFGIYGNHLRQLRKVCHSDYQREQLE
YHNMFLAGSVAGFVQSFIACPMELIKVRLQTATYYSDYLYGQRRTAFGTF
KRILKTDGISGLYRGLLPMMCRDVLPYGIYMLAYRQGVDYMDRRDFVRRR
RSQSDGSSVNLLVTTLAGAWAGVISWVCVIPFDVVKTLMQADENHKYRGI
FHCVRVQYRAYGWRSIFRGSWMLVARAVPFNAATFLGYEYALEWCQRWNG
TYVASFLDH
BO10395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5646-PA | 303 | CG5646-PA | 1..303 | 1..303 | 1637 | 100 | Plus |
CG4995-PD | 360 | CG4995-PD | 4..278 | 8..300 | 386 | 34.7 | Plus |
CG4995-PC | 360 | CG4995-PC | 4..278 | 8..300 | 386 | 34.7 | Plus |
CG4995-PB | 399 | CG4995-PB | 43..317 | 8..300 | 386 | 34.7 | Plus |
CG4995-PA | 399 | CG4995-PA | 43..317 | 8..300 | 386 | 34.7 | Plus |