Clone BO10395 Report

Search the DGRC for BO10395

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:103
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG5646-RA
Protein status:BO10395.pep: validated full length
Sequenced Size:943

Clone Sequence Records

BO10395.3prime Sequence

827 bp (826 high quality bases) assembled on 2006-04-19

> BO10395.3prime
ATGGTCTAGAAAGCTTGCTACGTAGGTGCCGTTCCACCGCTGACACCACT
CCAGCGCATACTCGTAGCCCAGGAAAGTGGCGGCATTGAAGGGAACCGCC
CGCGCCACCAGCATCCAGCTGCCGCGGAAGATGCTCCTCCAGCCGTAGGC
TCTGTACTGCACCCGCACGCAATGGAAGATGCCCCGGTACTTGTGATTCT
CGTCCGCCTGCATCAGCGTCTTGACCACGTCGAACGGAATGACACACACC
CACGAGATGACTCCCGCCCAGGCGCCGGCCAGCGTGGTCACCAGCAGGTT
CACACTGGATCCGTCCGACTGACTGCGTCGCCGGCGCACAAAGTCCCGCC
TGTCCATGTAGTCAACGCCCTGGCGATAGGCCAGCATATAGATTCCATAG
GGCAGGACGTCGCGGCACATCATGGGCAAAAGGCCGCGATAGAGCCCCGA
GATGCCATCAGTCTTGAGTATCCTTTTGAACGTGCCAAAGGCGGTCCTTC
TCTGGCCATAGAGATAGTCACTGTAATAAGTGGCTGTCTGCAGGCGAACC
TTGATCAGCTCCATGGGACAGGCGATGAAGGACTGCACGAATCCCGCCAC
AGAGCCCGCCAGGAACATGTTGTGGTACTCCAGCTGCTCCCGCTGGTAGT
CACTGTGGCACACCTTTCTCAGCTGCCTCAGATGGTTTCCATAGATGCCG
AANAGCAGCGAGTTGATCGCTCCCGTCGAGATGAACGGGAAGAACATGCC
CCTGTAGAAGCCGTTGACCCCATTATTTCTGCTGTAGATCTGTTGAATGG
CTGTCACAACGGATGAATTTGAGGCCT

BO10395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-PA 912 CG5646-RA 101..909 827..19 3951 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 1273 CG5646-RA 200..1008 827..19 3989 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27559644..27560038 19..413 1960 99.7 Plus
3R 32079331 3R 27560274..27560515 528..769 1184 99.2 Plus
3R 32079331 3R 27560100..27560214 413..527 560 99.1 Plus
3R 32079331 3R 27560761..27560821 767..827 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:43:50 has no hits.

BO10395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:33 Download gff for BO10395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 101..912 16..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:06 Download gff for BO10395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 101..912 16..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:53:42 Download gff for BO10395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 200..1008 19..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:32:59 Download gff for BO10395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 200..1008 19..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:32:59 Download gff for BO10395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27559644..27560037 19..412 99 <- Plus
3R 27560100..27560214 413..527 99 <- Plus
3R 27560274..27560514 528..768 99 <- Plus
3R 27560763..27560821 769..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:53:42 Download gff for BO10395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23385366..23385759 19..412 99 <- Plus
arm_3R 23385822..23385936 413..527 99 <- Plus
arm_3R 23385996..23386236 528..768 99 <- Plus
arm_3R 23386485..23386543 769..827 100   Plus

BO10395.5prime Sequence

876 bp (778 high quality bases) assembled on 2006-04-19

> BO10395.5prime
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCTTCCGCGGCAGCTGGATGCTGGTGGCGCGGGCGGTT
TCCTTCAATGCCGCCACTTTCCTGGG

BO10395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-PA 912 CG5646-RA 1..860 17..876 4150 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 1273 CG5646-RA 99..959 16..876 4215 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27559693..27560038 876..531 1700 99.4 Minus
3R 32079331 3R 27560274..27560515 416..175 1195 99.6 Minus
3R 32079331 3R 27560761..27560876 177..62 565 99.1 Minus
3R 32079331 3R 27560100..27560214 531..417 560 99.1 Minus
3R 32079331 3R 27561172..27561221 65..16 235 98 Minus
Blast to na_te.dros performed on 2015-02-04 04:07:37 has no hits.

BO10395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:34 Download gff for BO10395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:07 Download gff for BO10395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:30 Download gff for BO10395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 95..959 9..876 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:10 Download gff for BO10395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 95..959 9..876 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:10 Download gff for BO10395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27559693..27560037 532..876 99 <- Minus
3R 27560100..27560214 417..531 99 <- Minus
3R 27560274..27560514 176..416 99 <- Minus
3R 27560763..27560875 63..175 99 <- Minus
3R 27561175..27561225 9..62 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:30 Download gff for BO10395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23386897..23386947 9..62 92   Minus
arm_3R 23385415..23385759 532..876 99 <- Minus
arm_3R 23385822..23385936 417..531 99 <- Minus
arm_3R 23385996..23386236 176..416 99 <- Minus
arm_3R 23386485..23386597 63..175 99 <- Minus

BO10395.complete Sequence

943 bp (943 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631730

> BO10395.complete
GAAGTTATCAGTCGACATGAAGTGGGAGAACTACTGCGACTTTGTGGCCG
GATGCTTTGGCGGTGCCTGCGGGGTGCTAGTGGCCCACCCACTCGACACG
ATCAAAGTTTGGCAACAGGCCTCAAATTCATCCGTTGTGACAGCCATTCA
ACAGATCTACAGCAGAAATAATGGGGTCAACGGCTTCTACAGGGGCATGT
TCTTCCCGTTCATCTCGACGGGAGCGATCAACTCGCTGCTTTTCGGCATC
TATGGAAACCATCTGAGGCAGCTGAGAAAGGTGTGCCACAGTGACTACCA
GCGGGAGCAGCTGGAGTACCACAACATGTTCCTGGCGGGCTCTGTGGCGG
GATTCGTGCAGTCCTTCATCGCCTGTCCCATGGAGCTGATCAAGGTTCGC
CTGCAGACAGCCACTTATTACAGTGACTATCTCTATGGCCAGAGAAGGAC
CGCCTTTGGCACGTTCAAAAGGATACTCAAGACTGATGGCATCTCGGGGC
TCTATCGCGGCCTTTTGCCCATGATGTGCCGCGACGTCCTGCCCTATGGA
ATCTATATGCTGGCCTATCGCCAGGGCGTTGACTACATGGACAGGCGGGA
CTTTGTGCGCCGGCGACGCAGTCAGTCGGACGGATCCAGTGTGAACCTGC
TGGTGACCACGCTGGCCGGCGCCTGGGCGGGAGTCATCTCGTGGGTGTGT
GTCATTCCGTTCGACGTGGTCAAGACGCTGATGCAGGCGGACGAGAATCA
CAAGTACCGGGGCATCTTCCATTGCGTGCGGGTGCAGTACAGAGCCTACG
GCTGGAGGAGCATCTTCCGCGGCAGCTGGATGCTGGTGGCGCGGGCGGTT
CCCTTCAATGCCGCCACTTTCCTGGGCTACGAGTATGCGCTGGAGTGGTG
TCAGCGGTGGAACGGCACCTACGTAGCAAGCTTTCTAGACCAT

BO10395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 912 CG5646-PA 1..909 17..925 4470 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-RA 1273 CG5646-RA 99..1008 16..925 4475 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27559644..27560038 925..531 1960 99.7 Minus
3R 32079331 3R 27560274..27560515 416..175 1195 99.6 Minus
3R 32079331 3R 27560761..27560876 177..62 565 99.1 Minus
3R 32079331 3R 27560100..27560214 531..417 560 99.1 Minus
3R 32079331 3R 27561172..27561221 65..16 235 98 Minus
Blast to na_te.dros performed on 2014-11-26 21:49:45 has no hits.

BO10395.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:13 Download gff for BO10395.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:41 Download gff for BO10395.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 76..989 9..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:03 Download gff for BO10395.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 100..1008 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:13 Download gff for BO10395.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 76..989 9..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:24 Download gff for BO10395.complete
Subject Subject Range Query Range Percent Splice Strand
CG5646-RA 100..1008 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:24 Download gff for BO10395.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27560274..27560514 176..416 99 <- Minus
3R 27560763..27560875 63..175 99 <- Minus
3R 27561175..27561220 17..62 97   Minus
3R 27559640..27560037 532..927 99 <- Minus
3R 27560100..27560214 417..531 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:03 Download gff for BO10395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23385362..23385759 532..927 99 <- Minus
arm_3R 23385822..23385936 417..531 99 <- Minus
arm_3R 23385996..23386236 176..416 99 <- Minus
arm_3R 23386485..23386597 63..175 99 <- Minus
arm_3R 23386897..23386942 17..62 97   Minus

BO10395.pep Sequence

Translation from 16 to 943

> BO10395.pep
MKWENYCDFVAGCFGGACGVLVAHPLDTIKVWQQASNSSVVTAIQQIYSR
NNGVNGFYRGMFFPFISTGAINSLLFGIYGNHLRQLRKVCHSDYQREQLE
YHNMFLAGSVAGFVQSFIACPMELIKVRLQTATYYSDYLYGQRRTAFGTF
KRILKTDGISGLYRGLLPMMCRDVLPYGIYMLAYRQGVDYMDRRDFVRRR
RSQSDGSSVNLLVTTLAGAWAGVISWVCVIPFDVVKTLMQADENHKYRGI
FHCVRVQYRAYGWRSIFRGSWMLVARAVPFNAATFLGYEYALEWCQRWNG
TYVASFLDH

BO10395.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5646-PA 303 CG5646-PA 1..303 1..303 1637 100 Plus
CG4995-PD 360 CG4995-PD 4..278 8..300 386 34.7 Plus
CG4995-PC 360 CG4995-PC 4..278 8..300 386 34.7 Plus
CG4995-PB 399 CG4995-PB 43..317 8..300 386 34.7 Plus
CG4995-PA 399 CG4995-PA 43..317 8..300 386 34.7 Plus