Clone BO10401 Report

Search the DGRC for BO10401

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG31120-RB
Protein status:BO10401.pep: validated full length
Sequenced Size:1642

Clone Sequence Records

BO10401.3prime Sequence

867 bp (821 high quality bases) assembled on 2006-04-19

> BO10401.3prime
ATGGTCTAGAAAGCTTGCCGACTGCTTCTCCTTCCGTCTGGCCTGCAGCA
CACCACGCAGCATGTTGAAGGAACTCAGTACAGGCACCATGATGGGCAAG
AAGAGTGGAATGTAGATGGCGTACTTCTGCTCGTCCGGGAAGTACAACTG
CGCCAGCAGGCTGGCGTCAAAGAATCCCCGCTCCGAGGCCACGAACGCAC
GCTTGGCCAGCACCGAAGCGTCCGCCAGTCGGTGCTCCAAAAGAGCAGCC
TTGGCAGCCAAGATGTCGGCATAGGAATTTGTAATGGCGGCACCCACCTC
GTCGTCTATCACAATGTAGCTGATTTGATCCAACAGTTTGATGAGGCTCT
GGAGCGTGCTGCTTGCTGTGGATATGTGTCGAATGGCACTGCGTCTTAGG
TATGCTTCATACTCCCAGCGACGTGGCTCCAGTTGCTCGATATCCACCAC
CTTAACGCCCTCCATCTGAAGCTCACTGCTGATGTCGAGCAGCTTGTGCA
GCTGGTCCAGCATCACCTGCATGTTGTCCGTGGTGCTGACATGGTAGGGA
ACTGCCTCCTGATCGCTCATGGCCGCAAGGCACACATGCTCTGGCGGATT
AGCAATGATGAAGCCACCCCAGGGTGGCGAAATGAAGGCATCCACGTCGT
TCCGCGTCAGCCGCTGATCCTTGCTGTTGTAGATGTGAAGCGGAGCGATG
TGGCACGGTGGAATGTACACCACCAGGTTGATGGCCGGCTTGTCGGTGGT
GCTGGCGCTTAGATTCTGGGCAATCGATGTCAGCAGATGAGGCAGAGCGG
TTTCCTGGAGGGCGTAGTGTCGCCCCAATTTGCTCTGGTCGCGCACCTGC
TTGAGATCAGCCTCGAT

BO10401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31120-PB 1611 CG31120-RB 760..1608 867..19 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-S-RC 1764 CG44255-RC 861..1709 867..19 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24913827..24914364 330..867 2690 100 Plus
3R 32079331 3R 24913271..24913582 19..330 1545 99.7 Plus
Blast to na_te.dros performed on 2015-01-31 16:43:42 has no hits.

BO10401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:37 Download gff for BO10401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31120-PB 760..1611 15..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:12 Download gff for BO10401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31120-PB 760..1611 15..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:39:00 Download gff for BO10401.3prime
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 861..1712 15..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:51:27 Download gff for BO10401.3prime
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 861..1712 15..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:51:27 Download gff for BO10401.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24913267..24913581 15..329 99 <- Plus
3R 24913827..24914364 330..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:39:00 Download gff for BO10401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20738989..20739303 15..329 99 <- Plus
arm_3R 20739549..20740086 330..867 100   Plus

BO10401.5prime Sequence

889 bp (770 high quality bases) assembled on 2006-04-19

> BO10401.5prime
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATAAGTTCCGGATCGGGGCTACACTAGCA
TTTATCGTGGTCATCATTGGAATTGGCGTGCCCATGTGGTGGCGCACCAC
CACAGTCTACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGTCTGAGTA
AAATTCCGATCAAAACGGCTGTGCAGGTGGCCATCTACACACAACAGACC
AGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCAGCGACAA
TGAAATATGGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCAATGACCC
AGGAAGCACACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGAGAACCAT
GTCCAGAGCGTTGGCGACTTCATGTTCATCGAGTGGCCCAAACTGCAGGA
GGAGCTGCTACTAACCACCGAAAGATCGGCACTGATGCGAAGTGATACAC
CTTCCAACAAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCAGACGTAT
CGCATAAATCAAATTTTAAGTACCGATGAGCGGATGGGCGCCAAGTCGGA
AGCTCCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAAC
CGAGACTCACCCATGCCAAGTGGAACATAGCAATGGCTGTGAAGACTTAC
ATTGAGCCCTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACACGGTGCG
ATCGCAGTGGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAGCAGGTGC
GCGACCAGAGCAAATTGGGGCGACACTACGCCCTCCAGGAAACCGCTCTG
CCTCATCTGCTGACATCGATTGCCCAGAATCTAAGCGCC

BO10401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31120-PB 1611 CG31120-RB 1..873 17..889 4365 100 Plus
CG31120-PA 1611 CG31120-RA 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-S-RC 1764 CG44255-RC 101..974 16..889 4370 100 Plus
CG44254-RA 1826 CG44254-RA 101..158 16..73 290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24915193..24915391 500..302 995 100 Minus
3R 32079331 3R 24914506..24914700 695..501 975 100 Minus
3R 32079331 3R 24914251..24914444 889..696 970 100 Minus
3R 32079331 3R 24915447..24915589 302..160 715 100 Minus
3R 32079331 3R 24915645..24915737 162..70 465 100 Minus
3R 32079331 3R 24917703..24917764 77..16 295 98.4 Minus
Blast to na_te.dros performed on 2015-02-02 12:50:44 has no hits.

BO10401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:39 Download gff for BO10401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31120-PB 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:13 Download gff for BO10401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31120-PB 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:40 Download gff for BO10401.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 95..974 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:05 Download gff for BO10401.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 95..974 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:05 Download gff for BO10401.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24915447..24915586 163..302 100 <- Minus
3R 24915645..24915735 72..162 100 <- Minus
3R 24917709..24917770 9..71 95   Minus
3R 24914251..24914444 696..889 100 <- Minus
3R 24914506..24914700 501..695 100 <- Minus
3R 24915193..24915390 303..500 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:40 Download gff for BO10401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20739973..20740166 696..889 100 <- Minus
arm_3R 20740228..20740422 501..695 100 <- Minus
arm_3R 20740915..20741112 303..500 100 <- Minus
arm_3R 20741169..20741308 163..302 100 <- Minus
arm_3R 20741367..20741457 72..162 100 <- Minus
arm_3R 20743431..20743492 9..71 95   Minus

BO10401.complete Sequence

1642 bp (1642 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631731

> BO10401.complete
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATAAGTTCCGGATCGGGGCTACACTAGCA
TTTATCGTGGTCATCATTGGAATTGGCGTGCCCATGTGGTGGCGCACCAC
CACAGTCTACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGTCTGAGTA
AAATTCCGATCAAAACGGCTGTGCAGGTGGCCATCTACACACAACAGACC
AGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCAGCGACAA
TGAAATATGGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCAATGACCC
AGGAAGCACACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGAGAACCAT
GTCCAGAGCGTTGGCGACTTCATGTTCATCGAGTGGCCCAAACTGCAGGA
GGAGCTGCTACTAACCACCGAAAGATCGGCACTGATGCGAAGTGATACAC
CTTCCAACAAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCAGACGTAT
CGCATAAATCAAATTTTAAGTACCGATGAGCGGATGGGCGCCAAGTCGGA
AGCTCCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAAC
CGAGACTCACCCATGCCAAGTGGAACATAGCAATGGCTGTGAAGACTTAC
ATTGAGCCCTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACACGGTGCG
ATCGCAGTGGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAGCAGGTGC
GCGACCAGAGCAAATTGGGGCGACACTACGCCCTCCAGGAAACCGCTCTG
CCTCATCTGCTGACATCGATTGCCCAGAATCTAAGCGCCAGCACCACCGA
CAAGCCGGCCATCAACCTGGTGGTGTACATTCCACCGTGCCACATCGCTC
CGCTTCACATCTACAACAGCAAGGATCAGCGGCTGACGCGGAACGACGTG
GATGCCTTCATTTCGCCACCCTGGGGTGGCTTCATCATTGCTAATCCGCC
AGAGCATGTGTGCCTTGCGGCCATGAGCGATCAGGAGGCAGTTCCCTACC
ATGTCAGCACCACGGACAACATGCAGGTGATGCTGGACCAGCTGCACAAG
CTGCTCGACATCAGCAGTGAGCTTCAGATGGAGGGCGTTAAGGTGGTGGA
TATCGAGCAACTGGAGCCACGTCGCTGGGAGTATGAAGCATACCTAAGAC
GCAGTGCCATTCGACACATATCCACAGCAAGCAGCACGCTCCAGAGCCTC
ATCAAACTGTTGGATCAAATCAGCTACATTGTGATAGACGACGAGGTGGG
TGCCGCCATTACAAATTCCTATGCCGACATCTTGGCTGCCAAGGCTGCTC
TTTTGGAGCACCGACTGGCGGACGCTTCGGTGCTGGCCAAGCGTGCGTTC
GTGGCCTCGGAGCGGGGATTCTTTGACGCCAGCCTGCTGGCGCAGTTGTA
CTTCCCGGACGAGCAGAAGTACGCCATCTACATTCCACTCTTCTTGCCCA
TCATGGTGCCTGTACTGAGTTCCTTCAACATGCTGCGTGGTGTGCTGCAG
GCCAGACGGAAGGAGAAGCAGTCGGCAAGCTTTCTAGACCAT

BO10401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-S-RC 1611 CG44255-PC 1..1608 17..1624 8025 99.9 Plus
CG44254-RA 1611 CG44254-PA 1..57 17..73 285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-S-RC 1764 CG44255-RC 101..1709 16..1624 8030 99.9 Plus
CG44254-RA 1826 CG44254-RA 101..158 16..73 290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24913827..24914444 1313..696 3090 100 Minus
3R 32079331 3R 24913271..24913582 1624..1313 1545 99.7 Minus
3R 32079331 3R 24915193..24915391 500..302 995 100 Minus
3R 32079331 3R 24914506..24914700 695..501 975 100 Minus
3R 32079331 3R 24915447..24915589 302..160 715 100 Minus
3R 32079331 3R 24915645..24915737 162..70 465 100 Minus
3R 32079331 3R 24917703..24917764 77..16 295 98.4 Minus
Blast to na_te.dros performed on 2014-11-27 10:59:57 has no hits.

BO10401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:55 Download gff for BO10401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 1..1611 17..1628 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:23 Download gff for BO10401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 67..1684 9..1628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:52 Download gff for BO10401.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 102..1709 17..1626 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:55 Download gff for BO10401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 67..1684 9..1628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:12 Download gff for BO10401.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 102..1709 17..1626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:12 Download gff for BO10401.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24915645..24915735 72..162 100 <- Minus
3R 24917709..24917763 17..71 100   Minus
3R 24915193..24915390 303..500 100 <- Minus
3R 24913269..24913581 1314..1626 99 <- Minus
3R 24913827..24914444 696..1313 100 <- Minus
3R 24914506..24914700 501..695 100 <- Minus
3R 24915447..24915586 163..302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:52 Download gff for BO10401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20740915..20741112 303..500 100 <- Minus
arm_3R 20741169..20741308 163..302 100 <- Minus
arm_3R 20738991..20739303 1314..1626 99 <- Minus
arm_3R 20741367..20741457 72..162 100 <- Minus
arm_3R 20743431..20743485 17..71 100   Minus
arm_3R 20740228..20740422 501..695 100 <- Minus
arm_3R 20739549..20740166 696..1313 100 <- Minus

BO10401.pep Sequence

Translation from 16 to 1642

> BO10401.pep
METSSSSPVKPRRKDKDEDKFRIGATLAFIVVIIGIGVPMWWRTTTVYRV
NLPSTEILSLSKIPIKTAVQVAIYTQQTSRGQLLIAELQNAFSDNEIWSV
EFKQLSPTPMTQEAHTPAALEKLLLENHVQSVGDFMFIEWPKLQEELLLT
TERSALMRSDTPSNKIAQLLHAKILQTYRINQILSTDERMGAKSEAPQPA
YDVIVSVLNPKPRLTHAKWNIAMAVKTYIEPWLAKVSGVSNYTVRSQWKY
RVAIEADLKQVRDQSKLGRHYALQETALPHLLTSIAQNLSASTTDKPAIN
LVVYIPPCHIAPLHIYNSKDQRLTRNDVDAFISPPWGGFIIANPPEHVCL
AAMSDQEAVPYHVSTTDNMQVMLDQLHKLLDISSELQMEGVKVVDIEQLE
PRRWEYEAYLRRSAIRHISTASSTLQSLIKLLDQISYIVIDDEVGAAITN
SYADILAAKAALLEHRLADASVLAKRAFVASERGFFDASLLAQLYFPDEQ
KYAIYIPLFLPIMVPVLSSFNMLRGVLQARRKEKQSASFLDH

BO10401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-S-PC 536 CG44255-PC 1..536 1..536 2716 100 Plus