Clone Sequence Records
BO10401.3prime Sequence
867 bp (821 high quality bases) assembled on 2006-04-19
> BO10401.3prime
ATGGTCTAGAAAGCTTGCCGACTGCTTCTCCTTCCGTCTGGCCTGCAGCA
CACCACGCAGCATGTTGAAGGAACTCAGTACAGGCACCATGATGGGCAAG
AAGAGTGGAATGTAGATGGCGTACTTCTGCTCGTCCGGGAAGTACAACTG
CGCCAGCAGGCTGGCGTCAAAGAATCCCCGCTCCGAGGCCACGAACGCAC
GCTTGGCCAGCACCGAAGCGTCCGCCAGTCGGTGCTCCAAAAGAGCAGCC
TTGGCAGCCAAGATGTCGGCATAGGAATTTGTAATGGCGGCACCCACCTC
GTCGTCTATCACAATGTAGCTGATTTGATCCAACAGTTTGATGAGGCTCT
GGAGCGTGCTGCTTGCTGTGGATATGTGTCGAATGGCACTGCGTCTTAGG
TATGCTTCATACTCCCAGCGACGTGGCTCCAGTTGCTCGATATCCACCAC
CTTAACGCCCTCCATCTGAAGCTCACTGCTGATGTCGAGCAGCTTGTGCA
GCTGGTCCAGCATCACCTGCATGTTGTCCGTGGTGCTGACATGGTAGGGA
ACTGCCTCCTGATCGCTCATGGCCGCAAGGCACACATGCTCTGGCGGATT
AGCAATGATGAAGCCACCCCAGGGTGGCGAAATGAAGGCATCCACGTCGT
TCCGCGTCAGCCGCTGATCCTTGCTGTTGTAGATGTGAAGCGGAGCGATG
TGGCACGGTGGAATGTACACCACCAGGTTGATGGCCGGCTTGTCGGTGGT
GCTGGCGCTTAGATTCTGGGCAATCGATGTCAGCAGATGAGGCAGAGCGG
TTTCCTGGAGGGCGTAGTGTCGCCCCAATTTGCTCTGGTCGCGCACCTGC
TTGAGATCAGCCTCGAT
BO10401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31120-PB | 1611 | CG31120-RB | 760..1608 | 867..19 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-S-RC | 1764 | CG44255-RC | 861..1709 | 867..19 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24913827..24914364 | 330..867 | 2690 | 100 | Plus |
3R | 32079331 | 3R | 24913271..24913582 | 19..330 | 1545 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:43:42 has no hits.
BO10401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:37 Download gff for
BO10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-PB | 760..1611 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:12 Download gff for
BO10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-PB | 760..1611 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:39:00 Download gff for
BO10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-S-RC | 861..1712 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:51:27 Download gff for
BO10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-S-RC | 861..1712 | 15..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:51:27 Download gff for
BO10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24913267..24913581 | 15..329 | 99 | <- | Plus |
3R | 24913827..24914364 | 330..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:39:00 Download gff for
BO10401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20738989..20739303 | 15..329 | 99 | <- | Plus |
arm_3R | 20739549..20740086 | 330..867 | 100 | | Plus |
BO10401.5prime Sequence
889 bp (770 high quality bases) assembled on 2006-04-19
> BO10401.5prime
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATAAGTTCCGGATCGGGGCTACACTAGCA
TTTATCGTGGTCATCATTGGAATTGGCGTGCCCATGTGGTGGCGCACCAC
CACAGTCTACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGTCTGAGTA
AAATTCCGATCAAAACGGCTGTGCAGGTGGCCATCTACACACAACAGACC
AGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCAGCGACAA
TGAAATATGGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCAATGACCC
AGGAAGCACACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGAGAACCAT
GTCCAGAGCGTTGGCGACTTCATGTTCATCGAGTGGCCCAAACTGCAGGA
GGAGCTGCTACTAACCACCGAAAGATCGGCACTGATGCGAAGTGATACAC
CTTCCAACAAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCAGACGTAT
CGCATAAATCAAATTTTAAGTACCGATGAGCGGATGGGCGCCAAGTCGGA
AGCTCCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAAC
CGAGACTCACCCATGCCAAGTGGAACATAGCAATGGCTGTGAAGACTTAC
ATTGAGCCCTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACACGGTGCG
ATCGCAGTGGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAGCAGGTGC
GCGACCAGAGCAAATTGGGGCGACACTACGCCCTCCAGGAAACCGCTCTG
CCTCATCTGCTGACATCGATTGCCCAGAATCTAAGCGCC
BO10401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31120-PB | 1611 | CG31120-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
CG31120-PA | 1611 | CG31120-RA | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-S-RC | 1764 | CG44255-RC | 101..974 | 16..889 | 4370 | 100 | Plus |
CG44254-RA | 1826 | CG44254-RA | 101..158 | 16..73 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24915193..24915391 | 500..302 | 995 | 100 | Minus |
3R | 32079331 | 3R | 24914506..24914700 | 695..501 | 975 | 100 | Minus |
3R | 32079331 | 3R | 24914251..24914444 | 889..696 | 970 | 100 | Minus |
3R | 32079331 | 3R | 24915447..24915589 | 302..160 | 715 | 100 | Minus |
3R | 32079331 | 3R | 24915645..24915737 | 162..70 | 465 | 100 | Minus |
3R | 32079331 | 3R | 24917703..24917764 | 77..16 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:50:44 has no hits.
BO10401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:39 Download gff for
BO10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:13 Download gff for
BO10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:40 Download gff for
BO10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-S-RC | 95..974 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:05 Download gff for
BO10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-S-RC | 95..974 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:05 Download gff for
BO10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24915447..24915586 | 163..302 | 100 | <- | Minus |
3R | 24915645..24915735 | 72..162 | 100 | <- | Minus |
3R | 24917709..24917770 | 9..71 | 95 | | Minus |
3R | 24914251..24914444 | 696..889 | 100 | <- | Minus |
3R | 24914506..24914700 | 501..695 | 100 | <- | Minus |
3R | 24915193..24915390 | 303..500 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:40 Download gff for
BO10401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20739973..20740166 | 696..889 | 100 | <- | Minus |
arm_3R | 20740228..20740422 | 501..695 | 100 | <- | Minus |
arm_3R | 20740915..20741112 | 303..500 | 100 | <- | Minus |
arm_3R | 20741169..20741308 | 163..302 | 100 | <- | Minus |
arm_3R | 20741367..20741457 | 72..162 | 100 | <- | Minus |
arm_3R | 20743431..20743492 | 9..71 | 95 | | Minus |
BO10401.complete Sequence
1642 bp (1642 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631731
> BO10401.complete
GAAGTTATCAGTCGACATGGAAACCTCGAGCTCCAGTCCAGTAAAGCCCA
GGAGAAAAGACAAGGACGAAGATAAGTTCCGGATCGGGGCTACACTAGCA
TTTATCGTGGTCATCATTGGAATTGGCGTGCCCATGTGGTGGCGCACCAC
CACAGTCTACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGTCTGAGTA
AAATTCCGATCAAAACGGCTGTGCAGGTGGCCATCTACACACAACAGACC
AGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCAGCGACAA
TGAAATATGGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCAATGACCC
AGGAAGCACACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGAGAACCAT
GTCCAGAGCGTTGGCGACTTCATGTTCATCGAGTGGCCCAAACTGCAGGA
GGAGCTGCTACTAACCACCGAAAGATCGGCACTGATGCGAAGTGATACAC
CTTCCAACAAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCAGACGTAT
CGCATAAATCAAATTTTAAGTACCGATGAGCGGATGGGCGCCAAGTCGGA
AGCTCCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAATCCGAAAC
CGAGACTCACCCATGCCAAGTGGAACATAGCAATGGCTGTGAAGACTTAC
ATTGAGCCCTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACACGGTGCG
ATCGCAGTGGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAGCAGGTGC
GCGACCAGAGCAAATTGGGGCGACACTACGCCCTCCAGGAAACCGCTCTG
CCTCATCTGCTGACATCGATTGCCCAGAATCTAAGCGCCAGCACCACCGA
CAAGCCGGCCATCAACCTGGTGGTGTACATTCCACCGTGCCACATCGCTC
CGCTTCACATCTACAACAGCAAGGATCAGCGGCTGACGCGGAACGACGTG
GATGCCTTCATTTCGCCACCCTGGGGTGGCTTCATCATTGCTAATCCGCC
AGAGCATGTGTGCCTTGCGGCCATGAGCGATCAGGAGGCAGTTCCCTACC
ATGTCAGCACCACGGACAACATGCAGGTGATGCTGGACCAGCTGCACAAG
CTGCTCGACATCAGCAGTGAGCTTCAGATGGAGGGCGTTAAGGTGGTGGA
TATCGAGCAACTGGAGCCACGTCGCTGGGAGTATGAAGCATACCTAAGAC
GCAGTGCCATTCGACACATATCCACAGCAAGCAGCACGCTCCAGAGCCTC
ATCAAACTGTTGGATCAAATCAGCTACATTGTGATAGACGACGAGGTGGG
TGCCGCCATTACAAATTCCTATGCCGACATCTTGGCTGCCAAGGCTGCTC
TTTTGGAGCACCGACTGGCGGACGCTTCGGTGCTGGCCAAGCGTGCGTTC
GTGGCCTCGGAGCGGGGATTCTTTGACGCCAGCCTGCTGGCGCAGTTGTA
CTTCCCGGACGAGCAGAAGTACGCCATCTACATTCCACTCTTCTTGCCCA
TCATGGTGCCTGTACTGAGTTCCTTCAACATGCTGCGTGGTGTGCTGCAG
GCCAGACGGAAGGAGAAGCAGTCGGCAAGCTTTCTAGACCAT
BO10401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-S-RC | 1611 | CG44255-PC | 1..1608 | 17..1624 | 8025 | 99.9 | Plus |
CG44254-RA | 1611 | CG44254-PA | 1..57 | 17..73 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-S-RC | 1764 | CG44255-RC | 101..1709 | 16..1624 | 8030 | 99.9 | Plus |
CG44254-RA | 1826 | CG44254-RA | 101..158 | 16..73 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24913827..24914444 | 1313..696 | 3090 | 100 | Minus |
3R | 32079331 | 3R | 24913271..24913582 | 1624..1313 | 1545 | 99.7 | Minus |
3R | 32079331 | 3R | 24915193..24915391 | 500..302 | 995 | 100 | Minus |
3R | 32079331 | 3R | 24914506..24914700 | 695..501 | 975 | 100 | Minus |
3R | 32079331 | 3R | 24915447..24915589 | 302..160 | 715 | 100 | Minus |
3R | 32079331 | 3R | 24915645..24915737 | 162..70 | 465 | 100 | Minus |
3R | 32079331 | 3R | 24917703..24917764 | 77..16 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:59:57 has no hits.
BO10401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:55 Download gff for
BO10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RB | 1..1611 | 17..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:23 Download gff for
BO10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RB | 67..1684 | 9..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:52 Download gff for
BO10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-S-RC | 102..1709 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:55 Download gff for
BO10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RB | 67..1684 | 9..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:12 Download gff for
BO10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-S-RC | 102..1709 | 17..1626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:12 Download gff for
BO10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24915645..24915735 | 72..162 | 100 | <- | Minus |
3R | 24917709..24917763 | 17..71 | 100 | | Minus |
3R | 24915193..24915390 | 303..500 | 100 | <- | Minus |
3R | 24913269..24913581 | 1314..1626 | 99 | <- | Minus |
3R | 24913827..24914444 | 696..1313 | 100 | <- | Minus |
3R | 24914506..24914700 | 501..695 | 100 | <- | Minus |
3R | 24915447..24915586 | 163..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:52 Download gff for
BO10401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20740915..20741112 | 303..500 | 100 | <- | Minus |
arm_3R | 20741169..20741308 | 163..302 | 100 | <- | Minus |
arm_3R | 20738991..20739303 | 1314..1626 | 99 | <- | Minus |
arm_3R | 20741367..20741457 | 72..162 | 100 | <- | Minus |
arm_3R | 20743431..20743485 | 17..71 | 100 | | Minus |
arm_3R | 20740228..20740422 | 501..695 | 100 | <- | Minus |
arm_3R | 20739549..20740166 | 696..1313 | 100 | <- | Minus |
BO10401.pep Sequence
Translation from 16 to 1642
> BO10401.pep
METSSSSPVKPRRKDKDEDKFRIGATLAFIVVIIGIGVPMWWRTTTVYRV
NLPSTEILSLSKIPIKTAVQVAIYTQQTSRGQLLIAELQNAFSDNEIWSV
EFKQLSPTPMTQEAHTPAALEKLLLENHVQSVGDFMFIEWPKLQEELLLT
TERSALMRSDTPSNKIAQLLHAKILQTYRINQILSTDERMGAKSEAPQPA
YDVIVSVLNPKPRLTHAKWNIAMAVKTYIEPWLAKVSGVSNYTVRSQWKY
RVAIEADLKQVRDQSKLGRHYALQETALPHLLTSIAQNLSASTTDKPAIN
LVVYIPPCHIAPLHIYNSKDQRLTRNDVDAFISPPWGGFIIANPPEHVCL
AAMSDQEAVPYHVSTTDNMQVMLDQLHKLLDISSELQMEGVKVVDIEQLE
PRRWEYEAYLRRSAIRHISTASSTLQSLIKLLDQISYIVIDDEVGAAITN
SYADILAAKAALLEHRLADASVLAKRAFVASERGFFDASLLAQLYFPDEQ
KYAIYIPLFLPIMVPVLSSFNMLRGVLQARRKEKQSASFLDH
BO10401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-S-PC | 536 | CG44255-PC | 1..536 | 1..536 | 2716 | 100 | Plus |