Clone BO10402 Report

Search the DGRC for BO10402

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptPHGPx-RA
Protein status:BO10402.pep: validated not full length
Sequenced Size:541

Clone Sequence Records

BO10402.5prime Sequence

539 bp (538 high quality bases) assembled on 2006-04-19

> BO10402.5prime
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACC

BO10402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 83..594 12..523 2560 100 Plus
CG12013-PD 717 PHGPx-RD 203..714 12..523 2560 100 Plus
CG12013-PB 510 PHGPx-RB 1..507 17..523 2535 100 Plus
CG12013-PA 510 PHGPx-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 316..827 12..523 2560 100 Plus
PHGPx-RA 803 CG12013-RA 105..616 12..523 2560 100 Plus
PHGPx-RC 1148 CG12013-RC 450..961 12..523 2560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327861..3328185 12..336 1625 100 Plus
3L 28110227 3L 3328249..3328439 333..523 955 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:06:39 has no hits.

BO10402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:41 Download gff for BO10402.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PD 195..717 3..524 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:16 Download gff for BO10402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PD 195..717 3..524 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:35 Download gff for BO10402.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..961 12..523 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:29 Download gff for BO10402.5prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..961 12..523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:29 Download gff for BO10402.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3327854..3328183 5..334 99 -> Plus
3L 3328251..3328439 335..523 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:35 Download gff for BO10402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327854..3328183 5..334 99 -> Plus
arm_3L 3328251..3328439 335..523 100   Plus

BO10402.3prime Sequence

539 bp (538 high quality bases) assembled on 2006-04-19

> BO10402.3prime
ATGGTCTAGAAAGCTTGCCAGCAGCTTTTCAATGTCCTTGGCGATGTCCA
TGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTTC
ACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGGT
CTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTCA
CATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAGG
TGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACTG
ATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCCT
TTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGAG
GCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAAC
ATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCGT
TCTTGTAATCTCCGTTAGCAGACATGTCGACTGATAACT

BO10402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12013-PC 597 PHGPx-RC 83..594 530..19 2560 100 Minus
CG12013-PD 717 PHGPx-RD 203..714 530..19 2560 100 Minus
CG12013-PB 510 PHGPx-RB 1..507 525..19 2535 100 Minus
CG12013-PA 510 PHGPx-RA 1..507 525..19 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 316..827 530..19 2560 100 Minus
PHGPx-RA 803 CG12013-RA 105..616 530..19 2560 100 Minus
PHGPx-RC 1148 CG12013-RC 450..961 530..19 2560 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327861..3328185 530..206 1625 100 Minus
3L 28110227 3L 3328249..3328439 209..19 955 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:26:41 has no hits.

BO10402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:40 Download gff for BO10402.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-PD 195..717 18..539 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:14 Download gff for BO10402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12013-PD 195..717 18..539 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:29 Download gff for BO10402.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..961 19..530 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:42 Download gff for BO10402.3prime
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 450..961 19..530 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:42 Download gff for BO10402.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3327851..3328183 208..539 98 -> Minus
3L 3328251..3328439 19..207 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:29 Download gff for BO10402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327851..3328183 208..539 98 -> Minus
arm_3L 3328251..3328439 19..207 100   Minus

BO10402.complete Sequence

541 bp (541 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631732

> BO10402.complete
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACCAT

BO10402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 717 CG12013-PD 203..714 12..523 2560 100 Plus
PHGPx-RC 597 CG12013-PC 83..594 12..523 2560 100 Plus
PHGPx-RA 510 CG12013-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RD 1014 CG12013-RD 316..827 12..523 2560 100 Plus
PHGPx-RA 803 CG12013-RA 105..616 12..523 2560 100 Plus
PHGPx-RC 1148 CG12013-RC 450..961 12..523 2560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3327861..3328185 12..336 1625 100 Plus
3L 28110227 3L 3328249..3328439 333..523 955 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:41:02 has no hits.

BO10402.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:03 Download gff for BO10402.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RD 195..717 3..524 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:42 Download gff for BO10402.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 424..935 12..523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:03 Download gff for BO10402.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 455..961 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:03 Download gff for BO10402.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 424..935 12..523 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:33 Download gff for BO10402.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RC 455..961 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:33 Download gff for BO10402.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3327866..3328183 17..334 100 -> Plus
3L 3328251..3328439 335..525 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:03 Download gff for BO10402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3327866..3328183 17..334 100 -> Plus
arm_3L 3328251..3328439 335..525 98   Plus

BO10402.pep Sequence

Translation from 16 to 541

> BO10402.pep
MSANGDYKNAASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKCGLTKN
NYEKLTDLKEKYGERGLVILNFPCNQFGSQMPEADGEAMVCHLRDSKADI
GEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGIKWNFTKFLVNKEGVPIN
RYAPTTDPMDIAKDIEKLLASFLDH

BO10402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PA 169 CG12013-PA 1..169 1..169 887 100 Plus
PHGPx-PC 198 CG12013-PC 30..198 1..169 887 100 Plus
PHGPx-PD 238 CG12013-PD 70..238 1..169 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 6..169 403 50.6 Plus