Clone Sequence Records
BO10402.5prime Sequence
539 bp (538 high quality bases) assembled on 2006-04-19
> BO10402.5prime
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACC
BO10402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 83..594 | 12..523 | 2560 | 100 | Plus |
CG12013-PD | 717 | PHGPx-RD | 203..714 | 12..523 | 2560 | 100 | Plus |
CG12013-PB | 510 | PHGPx-RB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG12013-PA | 510 | PHGPx-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 316..827 | 12..523 | 2560 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 105..616 | 12..523 | 2560 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 450..961 | 12..523 | 2560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327861..3328185 | 12..336 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328439 | 333..523 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:06:39 has no hits.
BO10402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:41 Download gff for
BO10402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PD | 195..717 | 3..524 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:16 Download gff for
BO10402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 195..717 | 3..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:12:35 Download gff for
BO10402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..961 | 12..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:29 Download gff for
BO10402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..961 | 12..523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:29 Download gff for
BO10402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327854..3328183 | 5..334 | 99 | -> | Plus |
3L | 3328251..3328439 | 335..523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:12:35 Download gff for
BO10402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327854..3328183 | 5..334 | 99 | -> | Plus |
arm_3L | 3328251..3328439 | 335..523 | 100 | | Plus |
BO10402.3prime Sequence
539 bp (538 high quality bases) assembled on 2006-04-19
> BO10402.3prime
ATGGTCTAGAAAGCTTGCCAGCAGCTTTTCAATGTCCTTGGCGATGTCCA
TGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTTC
ACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGGT
CTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTCA
CATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAGG
TGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACTG
ATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCCT
TTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGAG
GCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAAC
ATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCGT
TCTTGTAATCTCCGTTAGCAGACATGTCGACTGATAACT
BO10402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PC | 597 | PHGPx-RC | 83..594 | 530..19 | 2560 | 100 | Minus |
CG12013-PD | 717 | PHGPx-RD | 203..714 | 530..19 | 2560 | 100 | Minus |
CG12013-PB | 510 | PHGPx-RB | 1..507 | 525..19 | 2535 | 100 | Minus |
CG12013-PA | 510 | PHGPx-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 316..827 | 530..19 | 2560 | 100 | Minus |
PHGPx-RA | 803 | CG12013-RA | 105..616 | 530..19 | 2560 | 100 | Minus |
PHGPx-RC | 1148 | CG12013-RC | 450..961 | 530..19 | 2560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327861..3328185 | 530..206 | 1625 | 100 | Minus |
3L | 28110227 | 3L | 3328249..3328439 | 209..19 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:26:41 has no hits.
BO10402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:40 Download gff for
BO10402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PD | 195..717 | 18..539 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:14 Download gff for
BO10402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 195..717 | 18..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:29 Download gff for
BO10402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..961 | 19..530 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:42 Download gff for
BO10402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 450..961 | 19..530 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:42 Download gff for
BO10402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327851..3328183 | 208..539 | 98 | -> | Minus |
3L | 3328251..3328439 | 19..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:29 Download gff for
BO10402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327851..3328183 | 208..539 | 98 | -> | Minus |
arm_3L | 3328251..3328439 | 19..207 | 100 | | Minus |
BO10402.complete Sequence
541 bp (541 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631732
> BO10402.complete
GAAGTTATCAGTCGACATGTCTGCTAACGGAGATTACAAGAACGCCGCCT
CGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGTTTCCCTG
GAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCTCCAAGTG
CGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAGGAGAAGT
ACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCAGTTTGGG
TCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACCTGCGCGA
CTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTGAATGGAG
ACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGACCGGCACC
CTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGAACAAGGA
GGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATGGACATCG
CCAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACCAT
BO10402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 717 | CG12013-PD | 203..714 | 12..523 | 2560 | 100 | Plus |
PHGPx-RC | 597 | CG12013-PC | 83..594 | 12..523 | 2560 | 100 | Plus |
PHGPx-RA | 510 | CG12013-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 316..827 | 12..523 | 2560 | 100 | Plus |
PHGPx-RA | 803 | CG12013-RA | 105..616 | 12..523 | 2560 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 450..961 | 12..523 | 2560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327861..3328185 | 12..336 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 3328249..3328439 | 333..523 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:41:02 has no hits.
BO10402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:03 Download gff for
BO10402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 195..717 | 3..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:42 Download gff for
BO10402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 424..935 | 12..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:03 Download gff for
BO10402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 455..961 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:03 Download gff for
BO10402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 424..935 | 12..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:33 Download gff for
BO10402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RC | 455..961 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:33 Download gff for
BO10402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327866..3328183 | 17..334 | 100 | -> | Plus |
3L | 3328251..3328439 | 335..525 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:03 Download gff for
BO10402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327866..3328183 | 17..334 | 100 | -> | Plus |
arm_3L | 3328251..3328439 | 335..525 | 98 | | Plus |
BO10402.pep Sequence
Translation from 16 to 541
> BO10402.pep
MSANGDYKNAASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKCGLTKN
NYEKLTDLKEKYGERGLVILNFPCNQFGSQMPEADGEAMVCHLRDSKADI
GEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGIKWNFTKFLVNKEGVPIN
RYAPTTDPMDIAKDIEKLLASFLDH
BO10402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-PA | 169 | CG12013-PA | 1..169 | 1..169 | 887 | 100 | Plus |
PHGPx-PC | 198 | CG12013-PC | 30..198 | 1..169 | 887 | 100 | Plus |
PHGPx-PD | 238 | CG12013-PD | 70..238 | 1..169 | 887 | 100 | Plus |
CG15116-PA | 193 | CG15116-PA | 33..191 | 6..169 | 403 | 50.6 | Plus |