Clone Sequence Records
BO10403.3prime Sequence
968 bp (818 high quality bases) assembled on 2006-04-19
> BO10403.3prime
ATGGTCTAGAAAGCTTGCAGGGGTGGCGTCTCCTGGCAAAAGCTGGTTTT
CGGGCGAGTCAACGTCCTCCTCCTTCATATCCTCGGAAGCTTTTTTATCG
GTTTCTTCTTCTGCCAAGAATTCATCCCATTTGGAAAGCCGTTCATGCGC
CTCGACAGCTGATTCCTCAATTTTGTATTTGGTCTTGCCATCCCAGGCCT
CCGCACTTAGTTGCCGCTGTCCAAAATAACGCCCCTGCATCATTTGAATG
ACGAGGTCAGCTTCCTCCGGCGAGGCCATGTTGATCTGGGCTACACCATC
AGGATGGCGATCATAGATAACCACTTTACGGACCATCCCGCATTTGCTGC
ACTCCTCACGCAGATTGTTTTGGTACTCCAATATGAGCTCCACTTCCTTC
TCAAAGAGTTCTGGGGTGAAGAGGTTTTTAATGATGACGGTTTTCTCATT
CTTTGACCGTTCGCCACGCAATTTATCTGGACGCCAATCAAATAACTTTT
CCTTCATCTTTTGCAATTTCTCTTTGTCCTTCTTCTTGCGTTTGGGCTTC
AGAGCGGGATTGTATTCTCCACGCATTTGGAACTGAGCCCTCTGGACACG
AATCTTGTGGCCACGCAGATTGTACTCGTCTAAAATTTTCAGCGCCAGAT
TGACACTCTCCACCTTGATGTAATCACACAAGCCATCGCCCTTGATTTGT
CCATCCTTTTCGGCATATAGTTTCAGCTTGAATTTCTGCGTCTGCGGATC
TCTCATTACCATGCCACACTTGCCCATCAGATCGGCAAACTCATCCATAG
TAATGTCCAGGGGCAAATTGGAGACATACACCTTGGTGTTCTGCAATGGA
TCCATTTCGAACCATTTTGGGGGCTCCTGGGCCTTTCGCTTGCCAGTGGG
CACTGCAGCGCTGGATGCTGGATTGTCTCTAGACATAGCAGCTTCCGCCT
CTGCCGTCATACGCTTGA
BO10403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6049-PB | 1671 | CG6049-RB | 719..1668 | 968..19 | 4750 | 100 | Minus |
| CG6049-PC | 1671 | CG6049-RC | 719..1668 | 968..19 | 4750 | 100 | Minus |
| CG6049-PA | 1671 | CG6049-RA | 719..1668 | 968..19 | 4750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 1022..1971 | 968..19 | 4750 | 100 | Minus |
| barc-RC | 2272 | CG6049-RC | 1007..1956 | 968..19 | 4750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424452..21424656 | 662..866 | 1025 | 100 | Plus |
| 3L | 28110227 | 3L | 21421106..21421292 | 310..496 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 21421359..21421529 | 495..665 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 21420704..21420857 | 19..172 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 21420918..21421054 | 173..309 | 685 | 100 | Plus |
| 3L | 28110227 | 3L | 21424718..21424819 | 867..968 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:23:20 has no hits.
BO10403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:42 Download gff for
BO10403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 720..1671 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:18 Download gff for
BO10403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 720..1671 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:26:18 Download gff for
BO10403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 1008..1964 | 9..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:53:36 Download gff for
BO10403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 1008..1964 | 9..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:53:36 Download gff for
BO10403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21420918..21421054 | 173..309 | 100 | <- | Plus |
| 3L | 21420696..21420857 | 9..172 | 97 | <- | Plus |
| 3L | 21421106..21421292 | 310..496 | 100 | <- | Plus |
| 3L | 21421361..21421527 | 497..663 | 100 | <- | Plus |
| 3L | 21424454..21424656 | 664..866 | 100 | <- | Plus |
| 3L | 21424718..21424818 | 867..967 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:26:18 Download gff for
BO10403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21414461..21414627 | 497..663 | 100 | <- | Plus |
| arm_3L | 21417818..21417918 | 867..967 | 100 | | Plus |
| arm_3L | 21413796..21413957 | 9..172 | 97 | <- | Plus |
| arm_3L | 21414018..21414154 | 173..309 | 100 | <- | Plus |
| arm_3L | 21414206..21414392 | 310..496 | 100 | <- | Plus |
| arm_3L | 21417554..21417756 | 664..866 | 100 | <- | Plus |
BO10403.5prime Sequence
861 bp (818 high quality bases) assembled on 2006-04-19
> BO10403.5prime
GAAGTTATCAGTCGACATGAGCGACGAAGGTGGCTGTAAATCGGAGCAGT
TAGAGAAATCCGAAGAAGCGGAGGAAAAAAAGGGGGACGCAGAAGGACAG
GAAGCGAAAGCTCCAATTCTCAACCCCATTTCAGTCCCAGAAGTTGATGA
CAAGCCGACGGAAAATAAACCCCAATCGGATAATCACGCGGACAAAACGG
ACGAAACTCCATCTCAGGACTTTGCCGCCTACGAGGAGCACATGACCTAT
GGAGCGGACGGCGGGGCTATATACACGGATCCCAGCACGAAGCAGAAATA
CAAGTGGTGCGCCACCGGAAACAATTGGCAACCCTTAGGCGTTGATGAAG
ATGTTGATGGACAGGCTGAAGATCCCTACGAAAACGAGCACTACAAGTGG
TGTCCCAAATCCCAACAGTGGTTGCCAAAAAAACAGGAAACTGAAACGGA
GCACTACAAGTGGGATGACGAGCAAAAGAAGTGGGTGCCCAAGCACCCGA
ACCCTGGCCAGGAAGGGGTTTGCGGTGTGGATGAGCATGGCGAGCGCACT
TACACCGACAAGGATGGCGTCGAGTTCTTTTGGGATGCAACCAAGAGTGC
TTGGTTCCCCAAGATCGATGATGATTTCATGGCTCGCTACCAAATGAACT
ATGGATTTATTGACAACACATCAGCGGGGGAGAAAGAGAAGGCTGAAAAG
GAGGCGGCTGAGGCCAAGAGAAAGGAGGAGGAACTCAAGCGTATGACGGC
AGAGGCGGAAGCTGCTATGTCTAGAGACAATCCAGCATCCAGCGCTGCAG
TGCCCACTGGCAAGCGAAAGGCCCAGGAGCCCCCAAAATGGTTCGAAATG
GATCCATTGCA
BO10403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6049-PB | 1671 | CG6049-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG6049-PC | 1671 | CG6049-RC | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG6049-PA | 1671 | CG6049-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 304..1148 | 17..861 | 4225 | 100 | Plus |
| barc-RC | 2272 | CG6049-RC | 289..1133 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424718..21425537 | 836..17 | 4100 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:36:28 has no hits.
BO10403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:43 Download gff for
BO10403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:19 Download gff for
BO10403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:30 Download gff for
BO10403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1132 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:26 Download gff for
BO10403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1132 | 17..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:26 Download gff for
BO10403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21424633..21424656 | 837..860 | 100 | <- | Minus |
| 3L | 21424718..21425537 | 17..836 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:30 Download gff for
BO10403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21417733..21417756 | 837..860 | 100 | <- | Minus |
| arm_3L | 21417818..21418637 | 17..836 | 100 | | Minus |
BO10403.complete Sequence
1702 bp (1702 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631733
> BO10403.complete
GAAGTTATCAGTCGACATGAGCGACGAAGGTGGCTGTAAATCGGAGCAGT
TAGAGAAATCCGAAGAAGCGGAGGAAAAAAAGGGGGACGCAGAAGGACAG
GAAGCGAAAGCTCCAATTCTCAACCCCATTTCAGTCCCAGAAGTTGATGA
CAAGCCGACGGAAAATAAACCCCAATCGGATAATCACGCGGACAAAACGG
ACGAAACTCCATCTCAGGACTTTGCCGCCTACGAGGAGCACATGACCTAT
GGAGCGGACGGCGGGGCTATATACACGGATCCCAGCACGAAGCAGAAATA
CAAGTGGTGCGCCACCGGAAACAATTGGCAACCCTTAGGCGTTGATGAAG
ATGTTGATGGACAGGCTGAAGATCCCTACGAAAACGAGCACTACAAGTGG
TGTCCCAAATCCCAACAGTGGTTGCCAAAAAAACAGGAAACTGAAACGGA
GCACTACAAGTGGGATGACGAGCAAAAGAAGTGGGTGCCCAAGCACCCGA
ACCCTGGCCAGGAAGGGGTTTGCGGTGTGGATGAGCATGGCGAGCGCACT
TACACCGACAAGGATGGCGTCGAGTTCTTTTGGGATGCAACCAAGAGTGC
TTGGTTCCCCAAGATCGATGATGATTTCATGGCTCGCTACCAAATGAACT
ATGGATTTATTGACAACACATCAGCGGGGGAGAAAGAGAAGGCTGAAAAG
GAGGCGGCTGAGGCCAAGAGAAAGGAGGAGGAACTCAAGCGTATGACGGC
AGAGGCGGAAGCTGCTATGTCTAGAGACAATCCAGCATCCAGCGCTGCAG
TGCCCACTGGCAAGCGAAAGGCCCAGGAGCCCCCAAAATGGTTCGAAATG
GATCCATTGCAGAACACCAAGGTGTATGTCTCCAATTTGCCCCTGGACAT
TACTATGGATGAGTTTGCCGATCTGATGGGCAAGTGTGGCATGGTAATGA
GAGATCCGCAGACGCAGAAATTCAAGCTGAAACTATATGCCGAAAAGGAT
GGACAAATCAAGGGCGATGGCTTGTGTGATTACATCAAGGTGGAGAGTGT
CAATCTGGCGCTGAAAATTTTAGACGAGTACAATCTGCGTGGCCACAAGA
TTCGTGTCCAGAGGGCTCAGTTCCAAATGCGTGGAGAATACAATCCCGCT
CTGAAGCCCAAACGCAAGAAGAAGGACAAAGAGAAATTGCAAAAGATGAA
GGAAAAGTTATTTGATTGGCGTCCAGATAAATTGCGTGGCGAACGGTCAA
AGAATGAGAAAACCGTCATCATTAAAAACCTCTTCACCCCAGAACTCTTT
GAGAAGGAAGTGGAGCTCATATTGGAGTACCAAAACAATCTGCGTGAGGA
GTGCAGCAAATGCGGGATGGTCCGTAAAGTGGTTATCTATGATCGCCATC
CTGATGGTGTAGCCCAGATCAACATGGCCTCGCCGGAGGAAGCTGACCTC
GTCATTCAAATGATGCAGGGGCGTTATTTTGGACAGCGGCAACTAAGTGC
GGAGGCCTGGGATGGCAAGACCAAATACAAAATTGAGGAATCAGCTGTCG
AGGCGCATGAACGGCTTTCCAAATGGGATGAATTCTTGGCAGAAGAAGAA
ACCGATAAAAAAGCTTCCGAGGATATGAAGGAGGAGGACGTTGACTCGCC
CGAAAACCAGCTTTTGCCAGGAGACGCCACCCCTGCAAGCTTTCTAGACC
AT
BO10403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 1671 | CG6049-PA | 1..1668 | 17..1684 | 8340 | 100 | Plus |
| barc-RC | 1671 | CG6049-PC | 1..1668 | 17..1684 | 8340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 304..1971 | 17..1684 | 8340 | 100 | Plus |
| barc-RC | 2272 | CG6049-RC | 289..1956 | 17..1684 | 8340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424718..21425537 | 836..17 | 4100 | 100 | Minus |
| 3L | 28110227 | 3L | 21424452..21424656 | 1041..837 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 21421106..21421292 | 1393..1207 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 21421359..21421529 | 1208..1038 | 855 | 100 | Minus |
| 3L | 28110227 | 3L | 21420704..21420857 | 1684..1531 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 21420918..21421054 | 1530..1394 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:17:05 has no hits.
BO10403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:56 Download gff for
BO10403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-RA | 1..1671 | 17..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:25 Download gff for
BO10403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-RA | 337..2012 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:49 Download gff for
BO10403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1956 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:56 Download gff for
BO10403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-RA | 337..2012 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:05 Download gff for
BO10403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1956 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:05 Download gff for
BO10403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21421361..21421527 | 1040..1206 | 100 | <- | Minus |
| 3L | 21424454..21424656 | 837..1039 | 100 | <- | Minus |
| 3L | 21421106..21421292 | 1207..1393 | 100 | <- | Minus |
| 3L | 21420702..21420857 | 1531..1686 | 98 | <- | Minus |
| 3L | 21420918..21421054 | 1394..1530 | 100 | <- | Minus |
| 3L | 21424718..21425537 | 17..836 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:49 Download gff for
BO10403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21414206..21414392 | 1207..1393 | 100 | <- | Minus |
| arm_3L | 21414461..21414627 | 1040..1206 | 100 | <- | Minus |
| arm_3L | 21417554..21417756 | 837..1039 | 100 | <- | Minus |
| arm_3L | 21413802..21413957 | 1531..1686 | 98 | <- | Minus |
| arm_3L | 21414018..21414154 | 1394..1530 | 100 | <- | Minus |
| arm_3L | 21417818..21418637 | 17..836 | 100 | | Minus |
BO10403.pep Sequence
Translation from 16 to 1702
> BO10403.pep
MSDEGGCKSEQLEKSEEAEEKKGDAEGQEAKAPILNPISVPEVDDKPTEN
KPQSDNHADKTDETPSQDFAAYEEHMTYGADGGAIYTDPSTKQKYKWCAT
GNNWQPLGVDEDVDGQAEDPYENEHYKWCPKSQQWLPKKQETETEHYKWD
DEQKKWVPKHPNPGQEGVCGVDEHGERTYTDKDGVEFFWDATKSAWFPKI
DDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAA
MSRDNPASSAAVPTGKRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEF
ADLMGKCGMVMRDPQTQKFKLKLYAEKDGQIKGDGLCDYIKVESVNLALK
ILDEYNLRGHKIRVQRAQFQMRGEYNPALKPKRKKKDKEKLQKMKEKLFD
WRPDKLRGERSKNEKTVIIKNLFTPELFEKEVELILEYQNNLREECSKCG
MVRKVVIYDRHPDGVAQINMASPEEADLVIQMMQGRYFGQRQLSAEAWDG
KTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDMKEEDVDSPENQLL
PGDATPASFLDH
BO10403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-PA | 556 | CG6049-PA | 1..556 | 1..556 | 2989 | 100 | Plus |
| barc-PC | 556 | CG6049-PC | 1..556 | 1..556 | 2989 | 100 | Plus |
