Clone BO10404 Report

Search the DGRC for BO10404

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptmol-RA
Protein status:BO10404.pep: validated full length
Sequenced Size:1456

Clone Sequence Records

BO10404.3prime Sequence

914 bp (872 high quality bases) assembled on 2006-04-19

> BO10404.3prime
ATGGTCTAGAAAGCTTGCCCAGTGATCCATGTCACGAATACGCTCCACTG
GGGGATTAGGCAACATCCGCGCCAAAGCATGCTTGTGCAGCGGGGAGATT
TGCACGGCTGCCGAGGCAATGCTGGATCCTGAATCCTGCGACATGGTGCG
CTGCATATGATGCATGGGATGCTGCACCACCGGACCGCCCACAAACTGCA
GCTGCTGCTGATGGTGGTGCTGGTGGTGCTGATGATGCTGCTGCAACGGA
TGCTGATGCAGTGGATGCGAATGCTGCTGCTGCGCCATTTGCTGCGACCT
TCGGAAGGGATATCTCCAAGGACTCTTTGGTGCATCCGACTGGAAGCCCT
TGTTTTCAACTCCACCGCTGCTGGACACTCCGGCTGGACTATCGCGACGC
GGTGCCGTGCCAGGTTGCAAGTCACGTGCCTTGGAGCTGAGGCGGCGCAG
GATGCGGGAGCCCAGTCCAGGTGGATCCTCTAAGCTGCGACTGTTGCGCG
GCTTTCGATAACGCACATCACTGGACTCCTCCAGAATCACATGGCGATCG
TATGGCGTGCCGTAGTATACCTCCAGCACAGTGGAGAAGGTGTGCGGCCA
AACCAAGTCAATAATGGAGATCAGAACTCCCGCAATAAAGCAGAGAATGC
CTGCCACCAAGACCAGCCAGTAGCACCATCCGAAATGAAACTCCAGGCGT
CCGCCTTCGAGGTGAATGGACAAAGGCCTCTTCGGGAGCAGGCAATGATA
GCCCACCGTGGTGCAGACCAGCAAGGCACCTGTCAAAGCCTTCATATAGG
CCCCATATCGGGGTACCGCTATCAGCAGCAGGTTCATCAGCAGCCACGAG
GCCAGCGAGGCCCAGAGCATTATGCTCGCGAAATATCCCGCAGCCCGGTA
CTGTCCACCCCACG

BO10404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4482-PD 1425 mol-RD 527..1422 914..19 4480 100 Minus
CG4482-PE 1092 mol-RE 194..1089 914..19 4480 100 Minus
CG4482-PC 1425 mol-RC 527..1422 914..19 4480 100 Minus
CG4482-PA 1425 mol-RA 527..1422 914..19 4480 100 Minus
CG4482-PB 1092 mol-RB 194..1089 914..19 4480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RG 2017 CG4482-RG 550..1445 914..19 4480 100 Minus
mol-RF 2073 CG4482-RF 606..1501 914..19 4480 100 Minus
mol-RD 3012 CG4482-RD 1545..2440 914..19 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14976492..14977085 59..652 2970 100 Plus
2L 23513712 2L 14977214..14977478 650..914 1325 100 Plus
2L 23513712 2L 14976319..14976358 19..58 200 100 Plus
Blast to na_te.dros performed 2015-01-31 16:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 1934..1972 326..288 114 76.9 Minus

BO10404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:44 Download gff for BO10404.3prime
Subject Subject Range Query Range Percent Splice Strand
mol-PB 194..1092 16..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:21 Download gff for BO10404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4482-PB 194..1092 16..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:37:14 Download gff for BO10404.3prime
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1545..2440 19..914 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:12 Download gff for BO10404.3prime
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1545..2440 19..914 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:12 Download gff for BO10404.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14976319..14976358 19..58 100 <- Plus
2L 14976492..14977083 59..650 100 <- Plus
2L 14977215..14977478 651..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:37:14 Download gff for BO10404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14976319..14976358 19..58 100 <- Plus
arm_2L 14976492..14977083 59..650 100 <- Plus
arm_2L 14977215..14977478 651..914 100   Plus

BO10404.5prime Sequence

854 bp (852 high quality bases) assembled on 2006-04-19

> BO10404.5prime
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGG

BO10404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4482-PD 1425 mol-RD 1..838 17..854 4190 100 Plus
CG4482-PC 1425 mol-RC 1..838 17..854 4190 100 Plus
CG4482-PA 1425 mol-RA 1..838 17..854 4190 100 Plus
CG4482-PE 1092 mol-RE 1..505 350..854 2525 100 Plus
CG4482-PB 1092 mol-RB 1..505 350..854 2525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RF 2073 CG4482-RF 79..917 16..854 4195 100 Plus
mol-RD 3012 CG4482-RD 1018..1856 16..854 4195 100 Plus
mol-RC 2455 CG4482-RC 461..1299 16..854 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14977214..14977647 807..374 2170 100 Minus
2L 23513712 2L 14992307..14992472 181..16 830 100 Minus
2L 23513712 2L 14983950..14984084 374..240 675 100 Minus
2L 23513712 2L 14984196..14984256 239..179 305 100 Minus
2L 23513712 2L 14977036..14977085 854..805 250 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:24:01 has no hits.

BO10404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:45 Download gff for BO10404.5prime
Subject Subject Range Query Range Percent Splice Strand
mol-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:23 Download gff for BO10404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4482-PA 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:12 Download gff for BO10404.5prime
Subject Subject Range Query Range Percent Splice Strand
mol-RC 454..1299 9..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:09 Download gff for BO10404.5prime
Subject Subject Range Query Range Percent Splice Strand
mol-RC 454..1299 9..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:09 Download gff for BO10404.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14992307..14992475 9..181 97   Minus
2L 14977036..14977083 807..854 100 <- Minus
2L 14977215..14977646 375..806 100 <- Minus
2L 14983950..14984084 240..374 100 <- Minus
2L 14984196..14984253 182..239 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:12 Download gff for BO10404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14977036..14977083 807..854 100 <- Minus
arm_2L 14977215..14977646 375..806 100 <- Minus
arm_2L 14983950..14984084 240..374 100 <- Minus
arm_2L 14984196..14984253 182..239 100 <- Minus
arm_2L 14992307..14992475 9..181 97   Minus

BO10404.complete Sequence

1456 bp (1456 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631734

> BO10404.complete
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGGTTTGGCCGCACACCTTCTCCACTGTGCTGGAGGTATACTACGGCAC
GCCATACGATCGCCATGTGATTCTGGAGGAGTCCAGTGATGTGCGTTATC
GAAAGCCGCGCAACAGTCGCAGCTTAGAGGATCCACCTGGACTGGGCTCC
CGCATCCTGCGCCGCCTCAGCTCCAAGGCACGTGACTTGCAACCTGGCAC
GGCACCGCGTCGCGATAGTCCAGCCGGAGTGTCCAGCAGCGGTGGAGTTG
AAAACAAGGGCTTCCAGTCGGATGCACCAAAGAGTCCTTGGAGATATCCC
TTCCGAAGGTCGCAGCAAATGGCGCAGCAGCAGCATTCGCATCCACTGCA
TCAGCATCCGTTGCAGCAGCATCATCAGCACCACCAGCACCACCATCAGC
AGCAGCTGCAGTTTGTGGGCGGTCCGGTGGTGCAGCATCCCATGCATCAT
ATGCAGCGCACCATGTCGCAGGATTCAGGATCCAGCATTGCCTCGGCAGC
CGTGCAAATCTCCCCGCTGCACAAGCATGCTTTGGCGCGGATGTTGCCTA
ATCCCCCAGTGGAGCGTATTCGTGACATGGATCACTGGGCAAGCTTTCTA
GACCAT

BO10404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RF 1425 CG4482-PF 1..1422 17..1438 7110 100 Plus
mol-RD 1425 CG4482-PD 1..1422 17..1438 7110 100 Plus
mol-RC 1425 CG4482-PC 1..1422 17..1438 7110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
mol-RF 2073 CG4482-RF 79..1501 16..1438 7115 100 Plus
mol-RD 3012 CG4482-RD 1018..2440 16..1438 7115 100 Plus
mol-RC 2455 CG4482-RC 461..1883 16..1438 7115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14976492..14977085 1398..805 2970 100 Minus
2L 23513712 2L 14977214..14977647 807..374 2170 100 Minus
2L 23513712 2L 14992307..14992472 181..16 830 100 Minus
2L 23513712 2L 14983950..14984084 374..240 675 100 Minus
2L 23513712 2L 14984196..14984256 239..179 305 100 Minus
2L 23513712 2L 14976319..14976358 1438..1399 200 100 Minus
Blast to na_te.dros performed 2014-11-28 08:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 1934..1972 1131..1169 114 76.9 Plus

BO10404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:04 Download gff for BO10404.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1..1425 17..1441 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:19 Download gff for BO10404.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1016..2437 17..1440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:43 Download gff for BO10404.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RC 462..1883 17..1440 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:04 Download gff for BO10404.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RD 1008..2437 9..1438 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:03 Download gff for BO10404.complete
Subject Subject Range Query Range Percent Splice Strand
mol-RC 462..1883 17..1440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:03 Download gff for BO10404.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14983950..14984084 240..374 100 <- Minus
2L 14984196..14984253 182..239 100 <- Minus
2L 14976316..14976358 1399..1440 95 <- Minus
2L 14976492..14977083 807..1398 100 <- Minus
2L 14977215..14977646 375..806 100 <- Minus
2L 14992307..14992471 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:43 Download gff for BO10404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14976316..14976358 1399..1440 95 <- Minus
arm_2L 14976492..14977083 807..1398 100 <- Minus
arm_2L 14977215..14977646 375..806 100 <- Minus
arm_2L 14983950..14984084 240..374 100 <- Minus
arm_2L 14984196..14984253 182..239 100 <- Minus
arm_2L 14992307..14992471 17..181 100   Minus

BO10404.pep Sequence

Translation from 16 to 1456

> BO10404.pep
MKGWFDAFRDDGGPTLYSFSNRTPVTGDVSIVAVSVLFATFYVAFLVIFP
GVRKQKFTTFSTVTLSLFVGLVILITRLGSAWHVAHATIIAPYKAFSREK
LPARIGTHIGLMHVNVTLTAIPIGNWTPPDIDYNERFTWEGANDMSANYR
HALQRGLPFPILTVAEYFSLGREGFSWGGQYRAAGYFASIMLWASLASWL
LMNLLLIAVPRYGAYMKALTGALLVCTTVGYHCLLPKRPLSIHLEGGRLE
FHFGWCYWLVLVAGILCFIAGVLISIIDLVWPHTFSTVLEVYYGTPYDRH
VILEESSDVRYRKPRNSRSLEDPPGLGSRILRRLSSKARDLQPGTAPRRD
SPAGVSSSGGVENKGFQSDAPKSPWRYPFRRSQQMAQQQHSHPLHQHPLQ
QHHQHHQHHHQQQLQFVGGPVVQHPMHHMQRTMSQDSGSSIASAAVQISP
LHKHALARMLPNPPVERIRDMDHWASFLDH

BO10404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
mol-PF 474 CG4482-PF 1..474 1..474 2543 100 Plus
mol-PD 474 CG4482-PD 1..474 1..474 2543 100 Plus
mol-PC 474 CG4482-PC 1..474 1..474 2543 100 Plus
mol-PA 474 CG4482-PA 1..474 1..474 2543 100 Plus
mol-PG 330 CG4482-PG 1..330 145..474 1784 100 Plus