Clone Sequence Records
BO10404.3prime Sequence
914 bp (872 high quality bases) assembled on 2006-04-19
> BO10404.3prime
ATGGTCTAGAAAGCTTGCCCAGTGATCCATGTCACGAATACGCTCCACTG
GGGGATTAGGCAACATCCGCGCCAAAGCATGCTTGTGCAGCGGGGAGATT
TGCACGGCTGCCGAGGCAATGCTGGATCCTGAATCCTGCGACATGGTGCG
CTGCATATGATGCATGGGATGCTGCACCACCGGACCGCCCACAAACTGCA
GCTGCTGCTGATGGTGGTGCTGGTGGTGCTGATGATGCTGCTGCAACGGA
TGCTGATGCAGTGGATGCGAATGCTGCTGCTGCGCCATTTGCTGCGACCT
TCGGAAGGGATATCTCCAAGGACTCTTTGGTGCATCCGACTGGAAGCCCT
TGTTTTCAACTCCACCGCTGCTGGACACTCCGGCTGGACTATCGCGACGC
GGTGCCGTGCCAGGTTGCAAGTCACGTGCCTTGGAGCTGAGGCGGCGCAG
GATGCGGGAGCCCAGTCCAGGTGGATCCTCTAAGCTGCGACTGTTGCGCG
GCTTTCGATAACGCACATCACTGGACTCCTCCAGAATCACATGGCGATCG
TATGGCGTGCCGTAGTATACCTCCAGCACAGTGGAGAAGGTGTGCGGCCA
AACCAAGTCAATAATGGAGATCAGAACTCCCGCAATAAAGCAGAGAATGC
CTGCCACCAAGACCAGCCAGTAGCACCATCCGAAATGAAACTCCAGGCGT
CCGCCTTCGAGGTGAATGGACAAAGGCCTCTTCGGGAGCAGGCAATGATA
GCCCACCGTGGTGCAGACCAGCAAGGCACCTGTCAAAGCCTTCATATAGG
CCCCATATCGGGGTACCGCTATCAGCAGCAGGTTCATCAGCAGCCACGAG
GCCAGCGAGGCCCAGAGCATTATGCTCGCGAAATATCCCGCAGCCCGGTA
CTGTCCACCCCACG
BO10404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4482-PD | 1425 | mol-RD | 527..1422 | 914..19 | 4480 | 100 | Minus |
CG4482-PE | 1092 | mol-RE | 194..1089 | 914..19 | 4480 | 100 | Minus |
CG4482-PC | 1425 | mol-RC | 527..1422 | 914..19 | 4480 | 100 | Minus |
CG4482-PA | 1425 | mol-RA | 527..1422 | 914..19 | 4480 | 100 | Minus |
CG4482-PB | 1092 | mol-RB | 194..1089 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RG | 2017 | CG4482-RG | 550..1445 | 914..19 | 4480 | 100 | Minus |
mol-RF | 2073 | CG4482-RF | 606..1501 | 914..19 | 4480 | 100 | Minus |
mol-RD | 3012 | CG4482-RD | 1545..2440 | 914..19 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14976492..14977085 | 59..652 | 2970 | 100 | Plus |
2L | 23513712 | 2L | 14977214..14977478 | 650..914 | 1325 | 100 | Plus |
2L | 23513712 | 2L | 14976319..14976358 | 19..58 | 200 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 16:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1934..1972 | 326..288 | 114 | 76.9 | Minus |
BO10404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:44 Download gff for
BO10404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-PB | 194..1092 | 16..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:21 Download gff for
BO10404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4482-PB | 194..1092 | 16..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:37:14 Download gff for
BO10404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1545..2440 | 19..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:50:12 Download gff for
BO10404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1545..2440 | 19..914 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:50:12 Download gff for
BO10404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14976319..14976358 | 19..58 | 100 | <- | Plus |
2L | 14976492..14977083 | 59..650 | 100 | <- | Plus |
2L | 14977215..14977478 | 651..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:37:14 Download gff for
BO10404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14976319..14976358 | 19..58 | 100 | <- | Plus |
arm_2L | 14976492..14977083 | 59..650 | 100 | <- | Plus |
arm_2L | 14977215..14977478 | 651..914 | 100 | | Plus |
BO10404.5prime Sequence
854 bp (852 high quality bases) assembled on 2006-04-19
> BO10404.5prime
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGG
BO10404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4482-PD | 1425 | mol-RD | 1..838 | 17..854 | 4190 | 100 | Plus |
CG4482-PC | 1425 | mol-RC | 1..838 | 17..854 | 4190 | 100 | Plus |
CG4482-PA | 1425 | mol-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
CG4482-PE | 1092 | mol-RE | 1..505 | 350..854 | 2525 | 100 | Plus |
CG4482-PB | 1092 | mol-RB | 1..505 | 350..854 | 2525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RF | 2073 | CG4482-RF | 79..917 | 16..854 | 4195 | 100 | Plus |
mol-RD | 3012 | CG4482-RD | 1018..1856 | 16..854 | 4195 | 100 | Plus |
mol-RC | 2455 | CG4482-RC | 461..1299 | 16..854 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14977214..14977647 | 807..374 | 2170 | 100 | Minus |
2L | 23513712 | 2L | 14992307..14992472 | 181..16 | 830 | 100 | Minus |
2L | 23513712 | 2L | 14983950..14984084 | 374..240 | 675 | 100 | Minus |
2L | 23513712 | 2L | 14984196..14984256 | 239..179 | 305 | 100 | Minus |
2L | 23513712 | 2L | 14977036..14977085 | 854..805 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:01 has no hits.
BO10404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:45 Download gff for
BO10404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:23 Download gff for
BO10404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4482-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:44:12 Download gff for
BO10404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 454..1299 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:09 Download gff for
BO10404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 454..1299 | 9..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:09 Download gff for
BO10404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14992307..14992475 | 9..181 | 97 | | Minus |
2L | 14977036..14977083 | 807..854 | 100 | <- | Minus |
2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:44:12 Download gff for
BO10404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14977036..14977083 | 807..854 | 100 | <- | Minus |
arm_2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
arm_2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
arm_2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
arm_2L | 14992307..14992475 | 9..181 | 97 | | Minus |
BO10404.complete Sequence
1456 bp (1456 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631734
> BO10404.complete
GAAGTTATCAGTCGACATGAAAGGCTGGTTCGACGCGTTTCGAGACGATG
GGGGACCAACGCTATATTCCTTCTCAAATCGAACACCCGTAACCGGAGAT
GTCTCAATCGTAGCCGTCTCAGTGCTATTTGCCACATTCTATGTAGCATT
TTTAGTCATCTTTCCGGGTGTCAGAAAACAGAAATTCACAACGTTTTCGA
CAGTCACATTGAGCCTTTTTGTGGGTCTAGTCATATTAATCACTCGCCTG
GGATCCGCGTGGCATGTGGCACATGCAACTATCATCGCGCCATACAAAGC
CTTCTCACGCGAGAAGCTCCCAGCGCGCATCGGCACCCACATTGGCCTCA
TGCATGTCAATGTGACGCTGACGGCGATTCCCATTGGAAACTGGACACCG
CCGGATATAGACTACAACGAACGCTTCACCTGGGAGGGAGCCAATGACAT
GAGTGCCAACTATCGTCACGCCCTCCAGCGGGGTCTCCCCTTTCCCATCC
TGACCGTTGCCGAATACTTTAGCCTGGGCCGTGAGGGATTCTCGTGGGGT
GGACAGTACCGGGCTGCGGGATATTTCGCGAGCATAATGCTCTGGGCCTC
GCTGGCCTCGTGGCTGCTGATGAACCTGCTGCTGATAGCGGTACCCCGAT
ATGGGGCCTATATGAAGGCTTTGACAGGTGCCTTGCTGGTCTGCACCACG
GTGGGCTATCATTGCCTGCTCCCGAAGAGGCCTTTGTCCATTCACCTCGA
AGGCGGACGCCTGGAGTTTCATTTCGGATGGTGCTACTGGCTGGTCTTGG
TGGCAGGCATTCTCTGCTTTATTGCGGGAGTTCTGATCTCCATTATTGAC
TTGGTTTGGCCGCACACCTTCTCCACTGTGCTGGAGGTATACTACGGCAC
GCCATACGATCGCCATGTGATTCTGGAGGAGTCCAGTGATGTGCGTTATC
GAAAGCCGCGCAACAGTCGCAGCTTAGAGGATCCACCTGGACTGGGCTCC
CGCATCCTGCGCCGCCTCAGCTCCAAGGCACGTGACTTGCAACCTGGCAC
GGCACCGCGTCGCGATAGTCCAGCCGGAGTGTCCAGCAGCGGTGGAGTTG
AAAACAAGGGCTTCCAGTCGGATGCACCAAAGAGTCCTTGGAGATATCCC
TTCCGAAGGTCGCAGCAAATGGCGCAGCAGCAGCATTCGCATCCACTGCA
TCAGCATCCGTTGCAGCAGCATCATCAGCACCACCAGCACCACCATCAGC
AGCAGCTGCAGTTTGTGGGCGGTCCGGTGGTGCAGCATCCCATGCATCAT
ATGCAGCGCACCATGTCGCAGGATTCAGGATCCAGCATTGCCTCGGCAGC
CGTGCAAATCTCCCCGCTGCACAAGCATGCTTTGGCGCGGATGTTGCCTA
ATCCCCCAGTGGAGCGTATTCGTGACATGGATCACTGGGCAAGCTTTCTA
GACCAT
BO10404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RF | 1425 | CG4482-PF | 1..1422 | 17..1438 | 7110 | 100 | Plus |
mol-RD | 1425 | CG4482-PD | 1..1422 | 17..1438 | 7110 | 100 | Plus |
mol-RC | 1425 | CG4482-PC | 1..1422 | 17..1438 | 7110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-RF | 2073 | CG4482-RF | 79..1501 | 16..1438 | 7115 | 100 | Plus |
mol-RD | 3012 | CG4482-RD | 1018..2440 | 16..1438 | 7115 | 100 | Plus |
mol-RC | 2455 | CG4482-RC | 461..1883 | 16..1438 | 7115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14976492..14977085 | 1398..805 | 2970 | 100 | Minus |
2L | 23513712 | 2L | 14977214..14977647 | 807..374 | 2170 | 100 | Minus |
2L | 23513712 | 2L | 14992307..14992472 | 181..16 | 830 | 100 | Minus |
2L | 23513712 | 2L | 14983950..14984084 | 374..240 | 675 | 100 | Minus |
2L | 23513712 | 2L | 14984196..14984256 | 239..179 | 305 | 100 | Minus |
2L | 23513712 | 2L | 14976319..14976358 | 1438..1399 | 200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1934..1972 | 1131..1169 | 114 | 76.9 | Plus |
BO10404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:04 Download gff for
BO10404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1..1425 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:19 Download gff for
BO10404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1016..2437 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:43 Download gff for
BO10404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 462..1883 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:04 Download gff for
BO10404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RD | 1008..2437 | 9..1438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:03 Download gff for
BO10404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mol-RC | 462..1883 | 17..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:03 Download gff for
BO10404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
2L | 14976316..14976358 | 1399..1440 | 95 | <- | Minus |
2L | 14976492..14977083 | 807..1398 | 100 | <- | Minus |
2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
2L | 14992307..14992471 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:43 Download gff for
BO10404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14976316..14976358 | 1399..1440 | 95 | <- | Minus |
arm_2L | 14976492..14977083 | 807..1398 | 100 | <- | Minus |
arm_2L | 14977215..14977646 | 375..806 | 100 | <- | Minus |
arm_2L | 14983950..14984084 | 240..374 | 100 | <- | Minus |
arm_2L | 14984196..14984253 | 182..239 | 100 | <- | Minus |
arm_2L | 14992307..14992471 | 17..181 | 100 | | Minus |
BO10404.pep Sequence
Translation from 16 to 1456
> BO10404.pep
MKGWFDAFRDDGGPTLYSFSNRTPVTGDVSIVAVSVLFATFYVAFLVIFP
GVRKQKFTTFSTVTLSLFVGLVILITRLGSAWHVAHATIIAPYKAFSREK
LPARIGTHIGLMHVNVTLTAIPIGNWTPPDIDYNERFTWEGANDMSANYR
HALQRGLPFPILTVAEYFSLGREGFSWGGQYRAAGYFASIMLWASLASWL
LMNLLLIAVPRYGAYMKALTGALLVCTTVGYHCLLPKRPLSIHLEGGRLE
FHFGWCYWLVLVAGILCFIAGVLISIIDLVWPHTFSTVLEVYYGTPYDRH
VILEESSDVRYRKPRNSRSLEDPPGLGSRILRRLSSKARDLQPGTAPRRD
SPAGVSSSGGVENKGFQSDAPKSPWRYPFRRSQQMAQQQHSHPLHQHPLQ
QHHQHHQHHHQQQLQFVGGPVVQHPMHHMQRTMSQDSGSSIASAAVQISP
LHKHALARMLPNPPVERIRDMDHWASFLDH
BO10404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mol-PF | 474 | CG4482-PF | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PD | 474 | CG4482-PD | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PC | 474 | CG4482-PC | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PA | 474 | CG4482-PA | 1..474 | 1..474 | 2543 | 100 | Plus |
mol-PG | 330 | CG4482-PG | 1..330 | 145..474 | 1784 | 100 | Plus |