Clone BO10405 Report

Search the DGRC for BO10405

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptvlc-RA
Protein status:BO10405.pep: validated not full length
Sequenced Size:1849

Clone Sequence Records

BO10405.3prime Sequence

910 bp (846 high quality bases) assembled on 2006-04-19

> BO10405.3prime
ATGGTCTAGAAAGCTTGCACTTCCGTTGCTAACGCTAGGATTAGCACAAC
TATCGCCAATTATTCCCGGCACGTCCGGGTCGGCATCAACATTTATGGGA
TTCAATTTGGCCGCTGCGGTCATAGCCTCGCGACGCTGACGTTTCATCTC
TAGAAGCAGTTTTCTCTGGGCCTCCCTCTTTAAAGCTGCTGCCGAGTTAG
GTGGGGGAGGTGCCGAGCCATTCACACGAACGCTGGATGCCTTTCCGACT
GTTTTCACTTGCGAAACACCGACTTTTGACGGCTTTATTGTCTTAGTTGG
TATGGTGTGCAAATCGGGTTGGTCAGCGACGGACTGTGCTTTTACCTTCC
AGTCGTTACTTTTGAGTTTCTCTATATCAGCAAAAATAGAATCCACGTGC
TCCACCTGCAAATAAACCATATCCCAGAATCCTTGTAAATCATCCAGAGT
TGTTGGAAACTTATCCTCTGGTGAGCGATTCAGATTATTGTGGCAAAGAC
CCTCGAATTGTTTCATTTTCTGCGATACCAAGAGACGGGCCTTACCCGAC
GCTGATCGCAGTAGCCCAAAGGTATCTTCGGAGATATCTGGATTTGTAGA
CAAGGCGTCTGCATATTTTTCAGCAAGAGCGGCTAGCACCAAGAGACGGC
TTTGTTCCTCTTTTAGTATTTTCAGAAAGAAATTTCCATCCTTAACAACA
GCTTCAACAGAAATATTGGAAGTGCTGATGTATTCCTCTGAGGCTAGTTT
GTCCATTTTTGTGGATTCGTGGTCTACTTCATCTGTGGGACCATGGTCTG
GACTTGACTCGTTATCTACAAGCAGTACATCAGGAGCCATGCAAGATCGA
GGAGCACCCCTTTTTGGTGACACAGTANGCAACTGGGCGCGGAACTCTTG
ACTAANGTGC

BO10405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8390-PA 1818 vlc-RA 924..1815 910..19 4422 99.7 Minus
CG8390-PB 1752 vlc-RB 858..1749 910..19 4422 99.7 Minus
CG8390-PC 1818 vlc-RC 924..1815 910..19 4422 99.7 Minus
CG8390-PD 1905 vlc-RD 1011..1902 910..19 4422 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-RI 2425 CG8390-RI 1011..1902 910..19 4438 99.8 Minus
vlc-RH 2369 CG8390-RH 955..1846 910..19 4438 99.8 Minus
vlc-RG 2487 CG8390-RG 1073..1964 910..19 4438 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5704434..5704916 501..19 2415 100 Minus
2R 25286936 2R 5703904..5704216 910..598 1543 99.4 Minus
2R 25286936 2R 5704286..5704384 597..499 495 100 Minus
Blast to na_te.dros performed 2015-02-12 13:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1854..1960 625..731 120 60.6 Plus

BO10405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:46 Download gff for BO10405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8390-PD 1011..1905 15..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:24 Download gff for BO10405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8390-PD 1011..1905 15..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:26:55 Download gff for BO10405.3prime
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 1073..1967 15..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:27 Download gff for BO10405.3prime
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 1073..1967 15..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:27 Download gff for BO10405.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5703904..5704216 598..910 99 -> Minus
2R 5704286..5704382 501..597 100 -> Minus
2R 5704435..5704919 15..500 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:26:55 Download gff for BO10405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1591409..1591721 598..910 99 -> Minus
arm_2R 1591791..1591887 501..597 100 -> Minus
arm_2R 1591940..1592424 15..500 99   Minus

BO10405.5prime Sequence

914 bp (847 high quality bases) assembled on 2006-04-19

> BO10405.5prime
GAAGTTATCAGTCGACATGGATCGCAGTCTGGACTCTATTGGCAGCTGTT
CACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGC
CTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTAC
TGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGC
ACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATG
GTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGA
TTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGC
CCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACC
ACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACGTGAGGTTTC
CCCGATTCGTCCCTCCACCAGCAGTCTACAGTACTGCAAACGCAACCACT
TTCTAGCGACACCAACTCTGCACAGCATGCCTTCTCCGGCCACCAAGTGC
AAACCCATCGAGCCTAACAACAACAGCAACGACAGTAGCGGGAATTTTAG
TTCGGGTTCTGGTCACAGCAATGGAAATGGCAGTTTTATCAAGCAACGGG
TGGAGCGACTTTACGGGCCGGGTGCATTAGCCCAGGGTTTCTACAGCCCC
AAAAAGCACGGCCAGTCACCATCGAATGCTGCAGGGCGATCGGAAAGGGG
GCAGGTGGAGATCGACTCTCTACAAGGCTCCGAACTGGCTCGGAAATCAA
GCAGCTCTCCCCCAGTAAAGACTATGGGGAGTTTCGAAAAAAAATGCAGA
AGAAGTGTTCTCAGAGTACAACGGCGAGGATAGACGAGCCGTTGCATTCT
CCAGGGCTAAACGG

BO10405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8390-PD 1905 vlc-RD 87..868 16..797 3910 100 Plus
CG8390-PA 1818 vlc-RA 1..781 17..797 3905 100 Plus
CG8390-PC 1818 vlc-RC 1..781 17..797 3905 100 Plus
CG8390-PB 1752 vlc-RB 1..424 17..440 2120 100 Plus
CG8390-PB 1752 vlc-RB 425..715 507..797 1455 100 Plus
CG8390-PD 1905 vlc-RD 869..986 797..914 565 99.1 Plus
CG8390-PA 1818 vlc-RA 782..899 797..914 565 99.1 Plus
CG8390-PC 1818 vlc-RC 782..899 797..914 565 99.1 Plus
CG8390-PB 1752 vlc-RB 716..833 797..914 565 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-RI 2425 CG8390-RI 87..986 16..914 4460 99.8 Plus
vlc-RH 2369 CG8390-RH 31..930 16..914 4460 99.8 Plus
vlc-RG 2487 CG8390-RG 149..1048 16..914 4460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5703048..5703879 84..914 4095 99.8 Plus
2R 25286936 2R 5702877..5702947 16..86 355 100 Plus
Blast to na_te.dros performed 2015-02-11 12:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5601..5673 517..589 122 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2420 473..594 118 62.9 Plus

BO10405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:47 Download gff for BO10405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8390-PD 79..986 8..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:26 Download gff for BO10405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8390-PD 79..986 8..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:56 Download gff for BO10405.5prime
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 141..1048 8..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:50:52 Download gff for BO10405.5prime
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 141..1048 8..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:50:52 Download gff for BO10405.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5703051..5703879 87..914 99   Plus
2R 5702869..5702947 8..86 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:56 Download gff for BO10405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1590374..1590452 8..86 96 -> Plus
arm_2R 1590556..1591384 87..914 99   Plus

BO10405.complete Sequence

1849 bp (1849 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631735

> BO10405.complete
GAAGTTATCAGTCGACATGGATCGCAGTCTGGACTCTATTGGCAGCTGTT
CACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGC
CTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTAC
TGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGC
ACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATG
GTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGA
TTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGC
CCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACC
ACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACGTGAGGTTTC
CCCGATTCGTCCCTCCACCAGCAGTCTACAGTACTGCAAACGCAACCACT
TTCTAGCGACACCAACTCTGCACAGCATGCCTTCTCCGGCCACCAAGTGC
AAACCCATCGAGCCTAACAACAACAGCAACGACAGTAGCGGGAATTTTAG
TTCGGGTTCTGGTCACAGCAATGGAAATGGCAGTTTTATCAAGCAACGGG
TGGAGCGACTTTACGGGCCGGGTGCATTAGCCCAGGGTTTCTACAGCCCC
AAAAAGCACGGCCAGTCACCATCGAATGCTGCAGGGCGATCGGAAAGGGG
GCAGGTGGAGATCGACTCTCTACAAGGCTCCGAACTGGCTCGGAAATTCA
AGCAGCTCTCCCCCAGTAAAGACTATGGGGAGTTTCGAAAAAAAATGCAG
AAGAAGTGTTCTCAGAGTACAACGGCGAGGATAGACGAGCCGTTGCATTC
TCCAGGGCTTAACGGAGATCTTGACCTGCCCGTGTTTAGGCACCTTAGTC
AAGAGTTCCGCGCCCAGTTGCCTACTGTGTCACCAAAAAGGGGTGCTCCT
CGATCTTGCATGGCTCCTGATGTACTGCTTGTAGATAACGAGTCAAGTCC
AGACCATGGTCCCACAGATGAAGTAGACCACGAATCCACAAAAATGGACA
AACTAGCCTCAGAGGAATACATCAGCACTTCCAATATTTCTGTTGAAGCT
GTTGTTAAGGATGGAAATTTCTTTCTGAAAATACTAAAAGAGGAACAAAG
CCGTCTCTTGGTGCTAGCCGCTCTTGCTGAAAAATATGCAGACGCCTTGT
CTACAAATCCAGATATCTCCGAAGATACCTTTGGGCTACTGCGATCAGCG
TCGGGTAAGGCCCGTCTCTTGGTATCGCAGAAAATGAAACAATTCGAGGG
TCTTTGCCACAATAATCTGAATCGCTCACCAGAGGATAAGTTTCCAACAA
CTCTGGATGATTTACAAGGATTCTGGGATATGGTTTATTTGCAGGTGGAG
CACGTGGATTCTATTTTTGCTGATATAGAGAAACTCAAAAGTAACGACTG
GAAGGTAAAAGCACAGTCCGTCGCTGACCAACCCGATTTGCACACCATAC
CAACTAAGACAATAAAGCCGTCAAAAGTCGGTGTTTCGCAAGTGAAAACA
GTCGGAAAGGCATCCAGCGTTCGTGTGAATGGCTCGGCACCTCCCCCACC
TAACTCGGCAGCAGCTTTAAAGAGGGAGGCCCAGAGAAAACTGCTTCTAG
AGATGAAACGTCAGCGTCGCGAGGCTATGACCGCAGCGGCCAAATTGAAT
CCCATAAATGTTGATGCCGACCCGGACGTGCCGGGAATAATTGGCGATAG
TTGTGCTAATCCTAGCGTTAGCAACGGAAGTGCAAGCTTTCTAGACCAT

BO10405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-RI 1818 CG8390-PI 1..1815 17..1831 9075 100 Plus
vlc-RH 1818 CG8390-PH 1..1815 17..1831 9075 100 Plus
vlc-RG 1818 CG8390-PG 1..1815 17..1831 9075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-RI 2425 CG8390-RI 87..1902 16..1831 9080 100 Plus
vlc-RH 2369 CG8390-RH 31..1846 16..1831 9080 100 Plus
vlc-RG 2487 CG8390-RG 149..1964 16..1831 9080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5703048..5704216 84..1252 5845 100 Plus
2R 25286936 2R 5704434..5704916 1349..1831 2415 100 Plus
2R 25286936 2R 5704286..5704384 1253..1351 495 100 Plus
2R 25286936 2R 5702877..5702947 16..86 355 100 Plus
Blast to na_te.dros performed 2014-11-27 13:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5601..5673 517..589 122 63 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1854..1960 1225..1119 120 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2420 473..594 118 62.9 Plus

BO10405.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:57 Download gff for BO10405.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RD 79..1905 8..1835 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:27 Download gff for BO10405.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RD 84..1910 8..1835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:26 Download gff for BO10405.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 150..1964 17..1833 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:57 Download gff for BO10405.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RD 84..1910 8..1835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:44 Download gff for BO10405.complete
Subject Subject Range Query Range Percent Splice Strand
vlc-RG 150..1964 17..1833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:44 Download gff for BO10405.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5702878..5702947 17..86 100 -> Plus
2R 5703051..5704216 87..1252 100 -> Plus
2R 5704286..5704382 1253..1349 100 -> Plus
2R 5704435..5704916 1350..1833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:26 Download gff for BO10405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1590383..1590452 17..86 100 -> Plus
arm_2R 1590556..1591721 87..1252 100 -> Plus
arm_2R 1591791..1591887 1253..1349 100 -> Plus
arm_2R 1591940..1592421 1350..1833 99   Plus

BO10405.pep Sequence

Translation from 16 to 1849

> BO10405.pep
MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE
RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS
AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPS
TSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGH
SNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEID
SLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNG
DLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDHGPT
DEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVL
AALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNN
LNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQ
SVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAA
LKREAQRKLLLEMKRQRREAMTAAAKLNPINVDADPDVPGIIGDSCANPS
VSNGSASFLDH

BO10405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
vlc-PI 605 CG8390-PI 1..605 1..605 3130 100 Plus
vlc-PH 605 CG8390-PH 1..605 1..605 3130 100 Plus
vlc-PG 605 CG8390-PG 1..605 1..605 3130 100 Plus
vlc-PF 605 CG8390-PF 1..605 1..605 3130 100 Plus
vlc-PE 605 CG8390-PE 1..605 1..605 3130 100 Plus