Clone BO10406 Report

Search the DGRC for BO10406

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptMESK2-RA
Protein status:BO10406.pep: validated full length
Sequenced Size:1375

Clone Sequence Records

BO10406.3prime Sequence

850 bp (820 high quality bases) assembled on 2006-04-19

> BO10406.3prime
ATGGTCTAGAAAGCTTGCCTGTACAGTGAGCTCAATTTGCGTGGAACTGC
TCCGGCTGACCGATGAGATTTTGCGCGCCAACTTTTGCAGTGTGCCAACA
GCGTAGCCCTCGCCCTGCAAGAAGAGCCGGAAGGCCTCGGCCAGCTTAGC
CGGCTGCTCCTCCAGCACCAAAGCGCAATCGGAAATCTTCATCCACGATG
AGTTTGTAGGATCTAGACGGCCATTGAAGGTCACCGTGTCGTCGACGTGC
GGCGAGAGCGAACCTGTGATATTGATCACCGGCATCTTCAGCGTGGTGGC
CGCCGTTTCGCTGCCCGGAGTACCTGGCGGAGTGCGTGCCAGATGCAGGT
CGTTACGATGGATGTACGCGTTGATCAGCATGGCAAGATTGGTCGGATTA
ACGCCACGCTCGAAGTGCTGCTTGTACATCTGCACCAGGTCGTGATTGCG
CTCCTCCGGATTGCGTCCGAAGTGGTGCCACATCAGATAATCGATCACGC
CCTGTGTCATGCCCTTGGTGCGCAAGAAGCGGGCATTGAAGCTCTGGTAG
CCCCACTCGATCCAGCCCGACTGCGTGGACACGCAATTGATCAGGCACAG
GGCGCCCACCTTGTCCGGATGGGCGTGAGCGAAACGGGCCAGAATATTCG
CCCCGGCACCAACGCCGAAACCAATCACCGACTTTAGGCCAAAGTGGGAT
AGCACGAAAAGCAGCTGGGCGGCCAGATCATCCATGGTCGGATAGACGTA
ATCCTCTGGCAAAGTGGGTGCACCCTCCTCCTGGCCAGGAGCAGTCACGT
GGTAAACACAGAAGTTCTCCAGCAGACCTCGCATCACTGGAAAATTGAAG

BO10406.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PA 1344 MESK2-RA 510..1341 850..19 4160 100 Minus
CG15669-PF 1344 MESK2-RF 510..1341 850..19 4160 100 Minus
CG15669-PD 1098 MESK2-RD 264..1095 850..19 4160 100 Minus
CG15669-PE 1344 MESK2-RE 510..1341 850..19 4160 100 Minus
CG15669-PJ 1407 MESK2-RJ 213..962 850..101 3750 100 Minus
CG15669-PI 1458 MESK2-RI 264..1013 850..101 3750 100 Minus
CG15669-PB 1278 MESK2-RB 510..1258 850..102 3745 100 Minus
CG15669-PK 1230 MESK2-RK 426..1174 850..102 3745 100 Minus
CG15669-PC 1314 MESK2-RC 510..1258 850..102 3745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RE 2619 CG15669-RE 1085..1916 850..19 4160 100 Minus
MESK2-RD 2218 CG15669-RD 684..1515 850..19 4160 100 Minus
MESK2-RF 2425 CG15669-RF 891..1722 850..19 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 751..187 2825 100 Minus
2R 25286936 2R 21511145..21511243 850..752 495 100 Minus
2R 25286936 2R 21512091..21512177 188..102 435 100 Minus
2R 25286936 2R 21514208..21514291 102..19 420 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:18:48 has no hits.

BO10406.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:48 Download gff for BO10406.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-PA 510..1344 16..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:28 Download gff for BO10406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PA 510..1344 16..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:42 Download gff for BO10406.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 891..1726 15..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:11 Download gff for BO10406.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 891..1726 15..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:11 Download gff for BO10406.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21511145..21511243 752..850 100 -> Minus
2R 21514209..21514295 15..101 97   Minus
2R 21511404..21511968 187..751 100 -> Minus
2R 21512093..21512177 102..186 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:42 Download gff for BO10406.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17398650..17398748 752..850 100 -> Minus
arm_2R 17398909..17399473 187..751 100 -> Minus
arm_2R 17399598..17399682 102..186 100 -> Minus
arm_2R 17401714..17401800 15..101 97   Minus

BO10406.5prime Sequence

944 bp (818 high quality bases) assembled on 2006-04-19

> BO10406.5prime
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCCAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCA
CCACTTCGGACGCAATCCGGAAGAGCGCAATCACGACCTGGTGC

BO10406.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PB 1278 MESK2-RB 1..928 17..944 4590 99.7 Plus
CG15669-PA 1344 MESK2-RA 1..928 17..944 4590 99.7 Plus
CG15669-PF 1344 MESK2-RF 1..928 17..944 4590 99.7 Plus
CG15669-PE 1344 MESK2-RE 1..928 17..944 4590 99.7 Plus
CG15669-PC 1314 MESK2-RC 1..928 17..944 4590 99.7 Plus
CG15669-PD 1098 MESK2-RD 1..682 263..944 3360 99.7 Plus
CG15669-PI 1458 MESK2-RI 1..682 263..944 3360 99.7 Plus
CG15669-PK 1230 MESK2-RK 209..844 309..944 3130 99.6 Plus
CG15669-PJ 1407 MESK2-RJ 1..631 314..944 3105 99.6 Plus
CG15669-PK 1230 MESK2-RK 1..209 17..225 1045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 602..1530 16..944 4615 99.8 Plus
MESK2-RE 2619 CG15669-RE 575..1503 16..944 4615 99.8 Plus
MESK2-RF 2425 CG15669-RF 381..1309 16..944 4615 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511723 625..944 1570 99.4 Plus
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511123..21511243 504..624 605 100 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:09:00 has no hits.

BO10406.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:49 Download gff for BO10406.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-PC 1..928 17..944 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:29 Download gff for BO10406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PE 1..928 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:48:50 Download gff for BO10406.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1309 16..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:42 Download gff for BO10406.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1309 16..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:42 Download gff for BO10406.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21507513..21507722 16..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
2R 21511123..21511243 504..624 100 -> Plus
2R 21511404..21511723 625..944 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:48:50 Download gff for BO10406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17395018..17395227 16..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398372..17398565 310..503 100 -> Plus
arm_2R 17398628..17398748 504..624 100 -> Plus
arm_2R 17398909..17399228 625..944 99   Plus

BO10406.complete Sequence

1375 bp (1375 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631736

> BO10406.complete
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCA
CCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGT
ACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTG
ATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTCCGCC
AGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGGTGA
TCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTC
AATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGATTG
CGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTCCGGC
TCTTCTTGCAGGGCGAGGGCTACGCTGTTGGCACACTGCAAAAGTTGGCG
CGCAAAATCTCATCGGTCAGCCGGAGCAGTTCCACGCAAATTGAGCTCAC
TGTACAGGCAAGCTTTCTAGACCAT

BO10406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RE 1344 CG15669-PE 1..1341 17..1357 6705 100 Plus
MESK2-RF 1344 CG15669-PF 1..1341 17..1357 6705 100 Plus
MESK2-RA 1344 CG15669-PA 1..1341 17..1357 6705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RE 2619 CG15669-RE 575..1916 16..1357 6710 100 Plus
MESK2-RF 2425 CG15669-RF 381..1722 16..1357 6710 100 Plus
MESK2-RA 2646 CG15669-RA 602..1943 16..1357 6710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 625..1189 2825 100 Plus
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511123..21511243 504..624 605 100 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
2R 25286936 2R 21512091..21512177 1188..1274 435 100 Plus
2R 25286936 2R 21514208..21514291 1274..1357 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:44:07 has no hits.

BO10406.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:05 Download gff for BO10406.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 1..1344 17..1360 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:46 Download gff for BO10406.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 586..1931 16..1361 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:23 Download gff for BO10406.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RA 603..1943 17..1359 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:05 Download gff for BO10406.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 586..1931 16..1361 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:15 Download gff for BO10406.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RA 603..1943 17..1359 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:15 Download gff for BO10406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21507514..21507722 17..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
2R 21511123..21511243 504..624 100 -> Plus
2R 21511404..21511968 625..1189 100 -> Plus
2R 21512093..21512177 1190..1274 100 -> Plus
2R 21514209..21514291 1275..1359 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:23 Download gff for BO10406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17395019..17395227 17..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398372..17398565 310..503 100 -> Plus
arm_2R 17398628..17398748 504..624 100 -> Plus
arm_2R 17398909..17399473 625..1189 100 -> Plus
arm_2R 17399598..17399682 1190..1274 100 -> Plus
arm_2R 17401714..17401796 1275..1359 97   Plus

BO10406.pep Sequence

Translation from 16 to 1375

> BO10406.pep
MPQSEGGYVSLPAVNGNGGAIYQSTTEPTAPPSVFASVKRAIGQAIKSSP
TDSEELLRSDRLPVIVGGSRDRDKSGKTLTTKMPSAPTHTAEEAHLLGTM
PVDPMDDIELRSVQLQFPNARGSILEACEQRRVPTDKGDVHVAIQGDTAK
PAIITYHDLGLNYATSFAGFFNFPVMRGLLENFCVYHVTAPGQEEGAPTL
PEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFGVGAGANILARFAHAHPDK
VGALCLINCVSTQSGWIEWGYQSFNARFLRTKGMTQGVIDYLMWHHFGRN
PEERNHDLVQMYKQHFERGVNPTNLAMLINAYIHRNDLHLARTPPGTPGS
ETAATTLKMPVINITGSLSPHVDDTVTFNGRLDPTNSSWMKISDCALVLE
EQPAKLAEAFRLFLQGEGYAVGTLQKLARKISSVSRSSSTQIELTVQASF
LDH

BO10406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-PE 447 CG15669-PE 1..447 1..447 2339 100 Plus
MESK2-PF 447 CG15669-PF 1..447 1..447 2339 100 Plus
MESK2-PA 447 CG15669-PA 1..447 1..447 2339 100 Plus
MESK2-PC 437 CG15669-PC 1..419 1..419 2214 100 Plus
MESK2-PB 425 CG15669-PB 1..419 1..419 2214 100 Plus