Clone Sequence Records
BO10407.3prime Sequence
875 bp (837 high quality bases) assembled on 2006-04-19
> BO10407.3prime
ATGGTCTAGAAAGCTTGCAATGGCATTGGGTGCAAACCATCCATGGAGAC
ACTTGGGCACGGGTCCATTGGTATGGAAATCACAACGGCCCAGCTCGGTC
ATCGTTTTGGCACATAGCACAATTAGGCCCACATAGCGATCGTTGAGACC
GCCCAGCACCATGGAGGCCAGGATAACGCCATCGTCCTCGGATTTCGGAT
CCGGCGAAGGCACAAAAATGGGCTCACTGGGATAGACATTCTCCTCGCAC
CAGGTTAGACAGCTCTTATTCCACACATCCACCTTGATGAGGGTGCCCGG
ATTCACTGCATCCACATCGGAGCTAATCGCGTAGAAGTATCGGTAGTTCT
TGCCCATATACCGTTCATAATAGATCCTAGGTGTTTCACAGCCCCAATCA
CACAGCATTTCCGGACGCAGTTGGATGCCATTGGTGCCCTGAAACGCCTC
CGCTTGACTGCCCTCCATGGTAACCAGATTGACAAGATTCTCCTCCTCAT
AGCGGCCACGTTTGGCATCTCGCTTGGGGCTTTCCTCTCCAGCAGTGGCT
TGCTTTCCATTGGTGGGCATGTAGGTTATATCCGCATATTGCGAGACCGA
GTGCTTCATGGTGCGAGAAACCTGCGGAGCACTTAGTCCAGCAAGGGAGA
AGGACTTGACCAGTCCCCGCTTGGCGATGCTTGCCGGAGGAATTGTGCCC
AAGGGCAGGACGAATCTCAAGGGACGTCCACGAAAGAGGGTAGCATAATT
GGGATTCGTTTGCATATTGGCAATGGCCTCCAGATACATGCAGTTGATCA
TCTCGGGATTCCTGTAGCTGCAAATGTCCACCACCACGTGGCCATCCCGT
TTCAAGCAGTTGATGATGTGCAGGT
BO10407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9347-PA | 1863 | ninaB-RA | 1004..1860 | 875..19 | 4235 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaB-RA | 2164 | CG9347-RA | 1140..1996 | 875..19 | 4255 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13702084..13702667 | 875..292 | 2890 | 99.7 | Minus |
3R | 32079331 | 3R | 13702724..13702996 | 291..19 | 1365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:30:14 has no hits.
BO10407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:50 Download gff for
BO10407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-PA | 1004..1863 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:30 Download gff for
BO10407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9347-PA | 1004..1863 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:36 Download gff for
BO10407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 1140..1996 | 19..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:57 Download gff for
BO10407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 1140..1996 | 19..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:57 Download gff for
BO10407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13702084..13702667 | 292..875 | 99 | -> | Minus |
3R | 13702724..13702996 | 19..291 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:36 Download gff for
BO10407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9527806..9528389 | 292..875 | 99 | -> | Minus |
arm_3R | 9528446..9528718 | 19..291 | 100 | | Minus |
BO10407.5prime Sequence
791 bp (790 high quality bases) assembled on 2006-04-19
> BO10407.5prime
GAAGTTATCAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCG
ACTTCTTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAA
CGACTGGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTG
GCTGCGATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACA
GCGGGCACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCC
GGCAGCTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTC
CGCCCTGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGA
ATCGCTTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGG
ATTGTGGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTC
GATCTTCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATA
ACTCGATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACG
GAGACGCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGC
ACGAATCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATC
CGCATGTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACC
AGATCTGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGAT
GTTCGAGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCT
BO10407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9347-PA | 1863 | ninaB-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaB-RA | 2164 | CG9347-RA | 137..911 | 17..791 | 3875 | 100 | Plus |
f-cup-RF | 2885 | CG9611-RF | 92..138 | 63..17 | 235 | 100 | Minus |
f-cup-RD | 2532 | CG9611-RD | 92..138 | 63..17 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13701068..13701577 | 61..570 | 2550 | 100 | Plus |
3R | 32079331 | 3R | 13701632..13701855 | 568..791 | 1120 | 100 | Plus |
3R | 32079331 | 3R | 13700701..13700747 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:06:52 has no hits.
BO10407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:51 Download gff for
BO10407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:32 Download gff for
BO10407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9347-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:48:22 Download gff for
BO10407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 137..911 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:55 Download gff for
BO10407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 137..911 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:55 Download gff for
BO10407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13701635..13701855 | 571..791 | 100 | | Plus |
3R | 13700701..13700745 | 17..61 | 100 | -> | Plus |
3R | 13701069..13701577 | 62..570 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:48:22 Download gff for
BO10407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9526423..9526467 | 17..61 | 100 | -> | Plus |
arm_3R | 9526791..9527299 | 62..570 | 100 | -> | Plus |
arm_3R | 9527357..9527577 | 571..791 | 100 | | Plus |
BO10407.complete Sequence
1894 bp (1894 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631737
> BO10407.complete
GAAGTTATCAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCG
ACTTCTTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAA
CGACTGGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTG
GCTGCGATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACA
GCGGGCACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCC
GGCAGCTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTC
CGCCCTGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGA
ATCGCTTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGG
ATTGTGGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTC
GATCTTCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATA
ACTCGATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACG
GAGACGCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGC
ACGAATCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATC
CGCATGTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACC
AGATCTGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGAT
GTTCGAGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGC
ATCCCGGTTATATGCACACCTTCGGCTTAACGGATCACTACTTTGTGATT
GTGGAGCAGCCGTTGTCCGTTTCGCTTACGGAGTATATCAAAGCCCAGCT
AGGTGGACAGAATTTATCGGCGTGTCTCAAGTGGTTCGAGGATCGACCGA
CACTATTTCACCTTATAGATCGGGTTTCCGGCAAACTGGTGCAGACCTAC
GAATCGGAAGCCTTCTTCTACCTGCACATCATCAACTGCTTTGAACGGGA
TGGCCACGTGGTGGTGGACATTTGCAGCTACAGGAATCCCGAGATGATCA
ACTGCATGTATCTGGAGGCCATTGCCAATATGCAAACGAATCCCAATTAT
GCTACCCTCTTTCGTGGACGTCCCTTGAGATTCGTCCTGCCCTTGGGCAC
AATTCCTCCGGCAAGCATCGCCAAGCGGGGACTGGTCAAGTCCTTCTCCC
TTGCTGGACTAAGTGCTCCGCAGGTTTCTCGCACCATGAAGCACTCGGTC
TCGCAATATGCGGATATAACCTACATGCCCACCAATGGAAAGCAAGCCAC
TGCTGGAGAGGAAAGCCCCAAGCGAGATGCCAAACGTGGCCGCTATGAGG
AGGAGAATCTTGTCAATCTGGTTACCATGGAGGGCAGTCAAGCGGAGGCG
TTTCAGGGCACCAATGGCATCCAACTGCGTCCGGAAATGCTGTGTGATTG
GGGCTGTGAAACACCTAGGATCTATTATGAACGGTATATGGGCAAGAACT
ACCGATACTTCTACGCGATTAGCTCCGATGTGGATGCAGTGAATCCGGGC
ACCCTCATCAAGGTGGATGTGTGGAATAAGAGCTGTCTAACCTGGTGCGA
GGAGAATGTCTATCCCAGTGAGCCCATTTTTGTGCCTTCGCCGGATCCGA
AATCCGAGGACGATGGCGTTATCCTGGCCTCCATGGTGCTGGGCGGTCTC
AACGATCGCTATGTGGGCCTAATTGTGCTATGTGCCAAAACGATGACCGA
GCTGGGCCGTTGTGATTTCCATACCAATGGACCCGTGCCCAAGTGTCTCC
ATGGATGGTTTGCACCCAATGCCATTGCAAGCTTTCTAGACCAT
BO10407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaB-RA | 1863 | CG9347-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaB-RA | 2164 | CG9347-RA | 137..1996 | 17..1876 | 9300 | 100 | Plus |
f-cup-RF | 2885 | CG9611-RF | 92..138 | 63..17 | 235 | 100 | Minus |
f-cup-RD | 2532 | CG9611-RD | 92..138 | 63..17 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13701632..13702667 | 568..1603 | 5180 | 100 | Plus |
3R | 32079331 | 3R | 13701068..13701577 | 61..570 | 2550 | 100 | Plus |
3R | 32079331 | 3R | 13702724..13702996 | 1604..1876 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 13700701..13700747 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:16:58 has no hits.
BO10407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:58 Download gff for
BO10407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 1..1863 | 17..1877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:28 Download gff for
BO10407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 116..1975 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:18:48 Download gff for
BO10407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 137..1996 | 17..1878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:58 Download gff for
BO10407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 116..1975 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:48 Download gff for
BO10407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaB-RA | 137..1996 | 17..1878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:48 Download gff for
BO10407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13700701..13700745 | 17..61 | 100 | -> | Plus |
3R | 13701069..13701577 | 62..570 | 100 | -> | Plus |
3R | 13701635..13702667 | 571..1603 | 100 | -> | Plus |
3R | 13702724..13702996 | 1604..1878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:18:48 Download gff for
BO10407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9526423..9526467 | 17..61 | 100 | -> | Plus |
arm_3R | 9526791..9527299 | 62..570 | 100 | -> | Plus |
arm_3R | 9527357..9528389 | 571..1603 | 100 | -> | Plus |
arm_3R | 9528446..9528718 | 1604..1878 | 99 | | Plus |
BO10407.pep Sequence
Translation from 16 to 1894
> BO10407.pep
MAAGVFKSFMRDFFAVKYDEQRNDPQAERLDGNGRLYPNCSSDVWLRSCE
REIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHR
FAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRF
AAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTT
DFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAH
VVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNL
SACLKWFEDRPTLFHLIDRVSGKLVQTYESEAFFYLHIINCFERDGHVVV
DICSYRNPEMINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPAS
IAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEES
PKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGIQLRPEMLCDWGCETP
RIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYP
SEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCD
FHTNGPVPKCLHGWFAPNAIASFLDH
BO10407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaB-PA | 620 | CG9347-PA | 1..620 | 1..620 | 3367 | 100 | Plus |