Clone BO10407 Report

Search the DGRC for BO10407

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptninaB-RA
Protein status:BO10407.pep: validated full length
Sequenced Size:1894

Clone Sequence Records

BO10407.3prime Sequence

875 bp (837 high quality bases) assembled on 2006-04-19

> BO10407.3prime
ATGGTCTAGAAAGCTTGCAATGGCATTGGGTGCAAACCATCCATGGAGAC
ACTTGGGCACGGGTCCATTGGTATGGAAATCACAACGGCCCAGCTCGGTC
ATCGTTTTGGCACATAGCACAATTAGGCCCACATAGCGATCGTTGAGACC
GCCCAGCACCATGGAGGCCAGGATAACGCCATCGTCCTCGGATTTCGGAT
CCGGCGAAGGCACAAAAATGGGCTCACTGGGATAGACATTCTCCTCGCAC
CAGGTTAGACAGCTCTTATTCCACACATCCACCTTGATGAGGGTGCCCGG
ATTCACTGCATCCACATCGGAGCTAATCGCGTAGAAGTATCGGTAGTTCT
TGCCCATATACCGTTCATAATAGATCCTAGGTGTTTCACAGCCCCAATCA
CACAGCATTTCCGGACGCAGTTGGATGCCATTGGTGCCCTGAAACGCCTC
CGCTTGACTGCCCTCCATGGTAACCAGATTGACAAGATTCTCCTCCTCAT
AGCGGCCACGTTTGGCATCTCGCTTGGGGCTTTCCTCTCCAGCAGTGGCT
TGCTTTCCATTGGTGGGCATGTAGGTTATATCCGCATATTGCGAGACCGA
GTGCTTCATGGTGCGAGAAACCTGCGGAGCACTTAGTCCAGCAAGGGAGA
AGGACTTGACCAGTCCCCGCTTGGCGATGCTTGCCGGAGGAATTGTGCCC
AAGGGCAGGACGAATCTCAAGGGACGTCCACGAAAGAGGGTAGCATAATT
GGGATTCGTTTGCATATTGGCAATGGCCTCCAGATACATGCAGTTGATCA
TCTCGGGATTCCTGTAGCTGCAAATGTCCACCACCACGTGGCCATCCCGT
TTCAAGCAGTTGATGATGTGCAGGT

BO10407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9347-PA 1863 ninaB-RA 1004..1860 875..19 4235 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-RA 2164 CG9347-RA 1140..1996 875..19 4255 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13702084..13702667 875..292 2890 99.7 Minus
3R 32079331 3R 13702724..13702996 291..19 1365 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:30:14 has no hits.

BO10407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:50 Download gff for BO10407.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaB-PA 1004..1863 18..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:30 Download gff for BO10407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9347-PA 1004..1863 18..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:36 Download gff for BO10407.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1140..1996 19..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:57 Download gff for BO10407.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1140..1996 19..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:57 Download gff for BO10407.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13702084..13702667 292..875 99 -> Minus
3R 13702724..13702996 19..291 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:36 Download gff for BO10407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9527806..9528389 292..875 99 -> Minus
arm_3R 9528446..9528718 19..291 100   Minus

BO10407.5prime Sequence

791 bp (790 high quality bases) assembled on 2006-04-19

> BO10407.5prime
GAAGTTATCAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCG
ACTTCTTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAA
CGACTGGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTG
GCTGCGATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACA
GCGGGCACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCC
GGCAGCTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTC
CGCCCTGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGA
ATCGCTTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGG
ATTGTGGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTC
GATCTTCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATA
ACTCGATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACG
GAGACGCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGC
ACGAATCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATC
CGCATGTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACC
AGATCTGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGAT
GTTCGAGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCT

BO10407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9347-PA 1863 ninaB-RA 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-RA 2164 CG9347-RA 137..911 17..791 3875 100 Plus
f-cup-RF 2885 CG9611-RF 92..138 63..17 235 100 Minus
f-cup-RD 2532 CG9611-RD 92..138 63..17 235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13701068..13701577 61..570 2550 100 Plus
3R 32079331 3R 13701632..13701855 568..791 1120 100 Plus
3R 32079331 3R 13700701..13700747 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:06:52 has no hits.

BO10407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:51 Download gff for BO10407.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaB-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:32 Download gff for BO10407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9347-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:48:22 Download gff for BO10407.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 137..911 17..791 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:55 Download gff for BO10407.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 137..911 17..791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:55 Download gff for BO10407.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13701635..13701855 571..791 100   Plus
3R 13700701..13700745 17..61 100 -> Plus
3R 13701069..13701577 62..570 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:48:22 Download gff for BO10407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9526423..9526467 17..61 100 -> Plus
arm_3R 9526791..9527299 62..570 100 -> Plus
arm_3R 9527357..9527577 571..791 100   Plus

BO10407.complete Sequence

1894 bp (1894 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631737

> BO10407.complete
GAAGTTATCAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCG
ACTTCTTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAA
CGACTGGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTG
GCTGCGATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACA
GCGGGCACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCC
GGCAGCTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTC
CGCCCTGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGA
ATCGCTTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGG
ATTGTGGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTC
GATCTTCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATA
ACTCGATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACG
GAGACGCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGC
ACGAATCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATC
CGCATGTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACC
AGATCTGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGAT
GTTCGAGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGC
ATCCCGGTTATATGCACACCTTCGGCTTAACGGATCACTACTTTGTGATT
GTGGAGCAGCCGTTGTCCGTTTCGCTTACGGAGTATATCAAAGCCCAGCT
AGGTGGACAGAATTTATCGGCGTGTCTCAAGTGGTTCGAGGATCGACCGA
CACTATTTCACCTTATAGATCGGGTTTCCGGCAAACTGGTGCAGACCTAC
GAATCGGAAGCCTTCTTCTACCTGCACATCATCAACTGCTTTGAACGGGA
TGGCCACGTGGTGGTGGACATTTGCAGCTACAGGAATCCCGAGATGATCA
ACTGCATGTATCTGGAGGCCATTGCCAATATGCAAACGAATCCCAATTAT
GCTACCCTCTTTCGTGGACGTCCCTTGAGATTCGTCCTGCCCTTGGGCAC
AATTCCTCCGGCAAGCATCGCCAAGCGGGGACTGGTCAAGTCCTTCTCCC
TTGCTGGACTAAGTGCTCCGCAGGTTTCTCGCACCATGAAGCACTCGGTC
TCGCAATATGCGGATATAACCTACATGCCCACCAATGGAAAGCAAGCCAC
TGCTGGAGAGGAAAGCCCCAAGCGAGATGCCAAACGTGGCCGCTATGAGG
AGGAGAATCTTGTCAATCTGGTTACCATGGAGGGCAGTCAAGCGGAGGCG
TTTCAGGGCACCAATGGCATCCAACTGCGTCCGGAAATGCTGTGTGATTG
GGGCTGTGAAACACCTAGGATCTATTATGAACGGTATATGGGCAAGAACT
ACCGATACTTCTACGCGATTAGCTCCGATGTGGATGCAGTGAATCCGGGC
ACCCTCATCAAGGTGGATGTGTGGAATAAGAGCTGTCTAACCTGGTGCGA
GGAGAATGTCTATCCCAGTGAGCCCATTTTTGTGCCTTCGCCGGATCCGA
AATCCGAGGACGATGGCGTTATCCTGGCCTCCATGGTGCTGGGCGGTCTC
AACGATCGCTATGTGGGCCTAATTGTGCTATGTGCCAAAACGATGACCGA
GCTGGGCCGTTGTGATTTCCATACCAATGGACCCGTGCCCAAGTGTCTCC
ATGGATGGTTTGCACCCAATGCCATTGCAAGCTTTCTAGACCAT

BO10407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-RA 1863 CG9347-PA 1..1860 17..1876 9300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-RA 2164 CG9347-RA 137..1996 17..1876 9300 100 Plus
f-cup-RF 2885 CG9611-RF 92..138 63..17 235 100 Minus
f-cup-RD 2532 CG9611-RD 92..138 63..17 235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13701632..13702667 568..1603 5180 100 Plus
3R 32079331 3R 13701068..13701577 61..570 2550 100 Plus
3R 32079331 3R 13702724..13702996 1604..1876 1365 100 Plus
3R 32079331 3R 13700701..13700747 17..63 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:16:58 has no hits.

BO10407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:58 Download gff for BO10407.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 1..1863 17..1877 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:28 Download gff for BO10407.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 116..1975 17..1876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:18:48 Download gff for BO10407.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 137..1996 17..1878 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:58 Download gff for BO10407.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 116..1975 17..1876 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:48 Download gff for BO10407.complete
Subject Subject Range Query Range Percent Splice Strand
ninaB-RA 137..1996 17..1878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:48 Download gff for BO10407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13700701..13700745 17..61 100 -> Plus
3R 13701069..13701577 62..570 100 -> Plus
3R 13701635..13702667 571..1603 100 -> Plus
3R 13702724..13702996 1604..1878 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:18:48 Download gff for BO10407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9526423..9526467 17..61 100 -> Plus
arm_3R 9526791..9527299 62..570 100 -> Plus
arm_3R 9527357..9528389 571..1603 100 -> Plus
arm_3R 9528446..9528718 1604..1878 99   Plus

BO10407.pep Sequence

Translation from 16 to 1894

> BO10407.pep
MAAGVFKSFMRDFFAVKYDEQRNDPQAERLDGNGRLYPNCSSDVWLRSCE
REIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHR
FAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRF
AAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTT
DFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAH
VVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNL
SACLKWFEDRPTLFHLIDRVSGKLVQTYESEAFFYLHIINCFERDGHVVV
DICSYRNPEMINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPAS
IAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEES
PKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGIQLRPEMLCDWGCETP
RIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYP
SEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCD
FHTNGPVPKCLHGWFAPNAIASFLDH

BO10407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
ninaB-PA 620 CG9347-PA 1..620 1..620 3367 100 Plus