Clone Sequence Records
BO10408.3prime Sequence
906 bp (834 high quality bases) assembled on 2006-04-19
> BO10408.3prime
ATGGTCTAGAAAGCTTGCTGAGCTGCTGGCCCTTAAGAAGTTGCGCCAGG
ATTCGCCATTAGATTTGCGATGAGATCCCATGTAGGCACTGGGTCCGGCG
ATGGCGGGCGGCATATCCATCTGGCCGGAGTAATTGAATACGGGAGTAGA
GGGACGGCTAGCGGGAGCACGGCTCTTGACGACCATTCGGAAACGGGGCG
GTTCCACGGATCGACGCTCCTCCTTCCTCTTGGGCTTCTTCTCTTCCTCC
TTCTTGGGCACCAGCCCTGGCATCTGAAGTGGTTGCCCGTTGTCCTGGAT
CGCGTCGAAGTCCTGTTGCCATAGAGCCACCTGTTTCATGGCAAACTTGT
GGTACTGCTTATCGATGCCAGATGGTCGCCGCTTTGGTATCATCACTATA
GTCTTGGCTTTCAGTGCATACACAGGTGGGGATATCTGATGGTAGCCGCG
TCGTTGGTAATCCCTTGGATATGCAGGCGGAATGCCAACCACCTTCTTGC
GCTTCAAATGTGGCTTCACCTCCTCTGTGGTCTCCGACTCCCGGGAGCAT
GGGCATGTGTGCCACGAATGCCAGTGCTCCGCCTCGCTCTCCTCCTGGCG
CTTCCTCAACCAATCGGCAGTGGGACGATTGGAATCGTAAACCACTGTCT
GGCTGTCTTGAGCTTCCTCTGAGCTCTCTGTATTGCGTCTTTGGCGCTGG
TAGTCCTCCGATTCCCTTTGCATATCCTCCTCAATATACGTTTCCTTTCG
CTTAACCGGACGATAGGTAATGCCGGAGGTATTAGTTTCCCTCCTAGATT
CCGGACGATTTTGCCATCGACGGCGATTCTGTTCGATAATCGCCTCCTGA
CGCCCTTGGTGATCGGCCGGATCCTGTGAGATGGTACGCCGGCGCAATAA
GTCCCG
BO10408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5089-PA | 1311 | CG5089-RA | 423..1308 | 904..19 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5089-RA | 1664 | CG5089-RA | 643..1528 | 904..19 | 4415 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16599390..16600275 | 904..19 | 4415 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:51:35 has no hits.
BO10408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:52 Download gff for
BO10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-PA | 421..1311 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:33 Download gff for
BO10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-PA | 421..1311 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:28 Download gff for
BO10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 641..1531 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:29 Download gff for
BO10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 641..1531 | 15..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:29 Download gff for
BO10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16599388..16600278 | 15..906 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:28 Download gff for
BO10408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12486893..12487783 | 15..906 | 99 | | Minus |
BO10408.5prime Sequence
847 bp (795 high quality bases) assembled on 2006-04-19
> BO10408.5prime
GAAGTTATCAGTCGACATGAATACCACTTTTAAAATGGCTCGAACGAGCC
TGAATCATTCTTGGCGGTTTGTTAGTAACAAAGCCAAGGGGCAATTTTCC
AGTTTGCGACGATTACCAGCAGTTACCAGCCAAAATCGTCGCTACGCAGA
CCGATATACCTTCGACGACCAGACTCAAGCACAAATCCAGGGCATCAAGA
AGATGAAAGAGATGTCCGCGGTGCCCCGGGAGTCTCCTTGGCGTGACAGC
GAATGGTCTCCCGATTTTCCCGAGCGTTTGGATGAGTTGGGCTACGAGTC
CCACTGCAACGATCGCCTCTATATAGCCAAGAACAAAATCCGTCACGAGC
AACAAAAATATGAATTGGAACGTGAAGAGCGTCGCAAGCAGGCCCAACGA
AGAATCAATAGTCACTTCGCTAAAGGTCAGGCAGAACCGGACTTATTGCG
CCGGCGTACCATCTCACAGGATCCGGCCGATCACCAAAGGCGTCAGGAGG
CGATTATCGAACAGAATCGCCGTCGATGGCAAAATCGTCCGGAATCTAGG
AGGGAAACTAATACCTCCGGCATTACCTATCGTCCGGTTAAGCGAAAGGA
AACGTATATTGAGGAGGATATGCAAAGGGAATCGGAGGACTACCAGCGCC
AAAGACGCAATACAGAGAGCTCAGAGGAAGCTCAAGACAGCCAGACAGTG
GTTTACGATTCCAATCGTCCCACTGCCGATTGGTTGAGGAAGCGCCAGGA
GGAGAGCGAGGCGGAGCACTGGCATTCGTGGCACACATGCCCATGCTCCC
GGGAGTCGGAGACCACAGAGGAGGTGAAGCCACATTTGAAGCGCAAG
BO10408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5089-PA | 1311 | CG5089-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5089-RA | 1664 | CG5089-RA | 221..1051 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16598968..16599798 | 17..847 | 4155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:16:40 has no hits.
BO10408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:53 Download gff for
BO10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:34 Download gff for
BO10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:56 Download gff for
BO10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 213..1051 | 7..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:14 Download gff for
BO10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 213..1051 | 7..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:14 Download gff for
BO10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16598960..16599798 | 7..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:56 Download gff for
BO10408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12486465..12487303 | 7..847 | 99 | | Plus |
BO10408.complete Sequence
1342 bp (1342 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631738
> BO10408.complete
GAAGTTATCAGTCGACATGAATACCACTTTTAAAATGGCTCGAACGAGCC
TGAATCATTCTTGGCGGTTTGTTAGTAACAAAGCCAAGGGGCAATTTTCC
AGTTTGCGACGATTACCAGCAGTTACCAGCCAAAATCGTCGCTACGCAGA
CCGATATACCTTCGACGACCAGACTCAAGCACAAATCCAGGGCATCAAGA
AGATGAAAGAGATGTCCGCGGTGCCCCGGGAGTCTCCTTGGCGTGACAGC
GAATGGTCTCCCGATTTTCCCGAGCGTTTGGATGAGTTGGGCTACGAGTC
CCACTGCAACGATCGCCTCTATATAGCCAAGAACAAAATCCGTCACGAGC
AACAAAAATATGAATTGGAACGTGAAGAGCGTCGCAAGCAGGCCCAACGA
AGAATCAATAGTCACTTCGCTAAAGGTCAGGCAGAACCGGACTTATTGCG
CCGGCGTACCATCTCACAGGATCCGGCCGATCACCAAAGGCGTCAGGAGG
CGATTATCGAACAGAATCGCCGTCGATGGCAAAATCGTCCGGAATCTAGG
AGGGAAACTAATACCTCCGGCATTACCTATCGTCCGGTTAAGCGAAAGGA
AACGTATATTGAGGAGGATATGCAAAGGGAATCGGAGGACTACCAGCGCC
AAAGACGCAATACAGAGAGCTCAGAGGAAGCTCAAGACAGCCAGACAGTG
GTTTACGATTCCAATCGTCCCACTGCCGATTGGTTGAGGAAGCGCCAGGA
GGAGAGCGAGGCGGAGCACTGGCATTCGTGGCACACATGCCCATGCTCCC
GGGAGTCGGAGACCACAGAGGAGGTGAAGCCACATTTGAAGCGCAAGAAG
GTGGTTGGCATTCCGCCTGCATATCCAAGGGATTACCAACGACGCGGCTA
CCATCAGATATCCCCACCTGTGTATGCACTGAAAGCCAAGACTATAGTGA
TGATACCAAAGCGGCGACCATCTGGCATCGATAAGCAGTACCACAAGTTT
GCCATGAAACAGGTGGCTCTATGGCAACAGGACTTCGACGCGATCCAGGA
CAACGGGCAACCACTTCAGATGCCAGGGCTGGTGCCCAAGAAGGAGGAAG
AGAAGAAGCCCAAGAGGAAGGAGGAGCGTCGATCCGTGGAACCGCCCCGT
TTCCGAATGGTCGTCAAGAGCCGTGCTCCCGCTAGCCGTCCCTCTACTCC
CGTATTCAATTACTCCGGCCAGATGGATATGCCGCCCGCCATCGCCGGAC
CCAGTGCCTACATGGGATCTCATCGCAAATCTAATGGCGAATCCTGGCGC
AACTTCTTAAGGGCCAGCAGCTCAGCAAGCTTTCTAGACCAT
BO10408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5089-RA | 1311 | CG5089-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5089-RA | 1664 | CG5089-RA | 221..1528 | 17..1324 | 6540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16598968..16600275 | 17..1324 | 6540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:57:13 has no hits.
BO10408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:06 Download gff for
BO10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 1..1311 | 17..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:47 Download gff for
BO10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 213..1531 | 7..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:11 Download gff for
BO10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 221..1528 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:07 Download gff for
BO10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 213..1531 | 7..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:36 Download gff for
BO10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5089-RA | 221..1528 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:36 Download gff for
BO10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16598968..16600275 | 17..1326 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:11 Download gff for
BO10408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12486473..12487780 | 17..1326 | 99 | | Plus |
BO10408.pep Sequence
Translation from 16 to 1342
> BO10408.pep
MNTTFKMARTSLNHSWRFVSNKAKGQFSSLRRLPAVTSQNRRYADRYTFD
DQTQAQIQGIKKMKEMSAVPRESPWRDSEWSPDFPERLDELGYESHCNDR
LYIAKNKIRHEQQKYELEREERRKQAQRRINSHFAKGQAEPDLLRRRTIS
QDPADHQRRQEAIIEQNRRRWQNRPESRRETNTSGITYRPVKRKETYIEE
DMQRESEDYQRQRRNTESSEEAQDSQTVVYDSNRPTADWLRKRQEESEAE
HWHSWHTCPCSRESETTEEVKPHLKRKKVVGIPPAYPRDYQRRGYHQISP
PVYALKAKTIVMIPKRRPSGIDKQYHKFAMKQVALWQQDFDAIQDNGQPL
QMPGLVPKKEEEKKPKRKEERRSVEPPRFRMVVKSRAPASRPSTPVFNYS
GQMDMPPAIAGPSAYMGSHRKSNGESWRNFLRASSSASFLDH
BO10408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5089-PA | 436 | CG5089-PA | 1..436 | 1..436 | 2323 | 100 | Plus |
