Clone Sequence Records
BO10409.3prime Sequence
731 bp (730 high quality bases) assembled on 2006-04-19
> BO10409.3prime
ATGGTCTAGAAAGCTTGCATTCAAGTTAACTGATACTCCCTGCTTCTGCT
GCTCCTTGAGTTCCTGGACGACAAAGTTGCGGAATTCCTCGTAGGCCACA
TCGATGTCCACGTTATTGATGATCTTGTGGAAGTTGCCGGGCGTCAAACC
ATAATCGAGCTCCACCTGAGCGGCATTGAGGCGCTTGCTCAGCGACTCCT
CCGTTTCGGAGCCACGTTTGCGAAGTCGTCGCTCCAGCTCCTTGATGCTC
GGTGGATTGTTGAATATCAGTATGGGATTGAGATCCGTACGCTTGATCTG
CTCCACTCCCTTCTGTTCGATGTCCAGTATGCAGACCCGTCCCTGTGCCT
GGATCTCTCTAACCGCCGCCTTGCTCGTTCCATAAAGATTGCCCGTAAAC
TCGGCCGTCTCGATGAACTCGTCGCCAGCGATGGCTGCCTCCATTTCCGG
ACGTTCCACAAAATAGTAGTGCACGCCATGCTCCTCGCCCTCACGCGGCT
TCCGCGTGGTGTGCGATATGCTGAAGCCAAAGGTGCTGGGGAATTCGGCG
AATAGCCTTTTCAGCAGCGTACTCTTTCCGGATCCCGAGGGACCGCATAG
GACAAGGGGGCGTGGCCCGGGGGCGGTCATCTTCTTGCTCGTTAAGGATG
CCGCTGCACTGCTACTGCTGCTGCTGCTGCTGAGCGCCCGATTTACAATG
AACAGAAAGCTTATCATGTCGACTGATAACT
BO10409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-PA | 702 | CG11811-RA | 1..699 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 1575 | CG11811-RA | 153..851 | 717..19 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10691176..10691874 | 717..19 | 3495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:29:59 has no hits.
BO10409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:54 Download gff for
BO10409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:35 Download gff for
BO10409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 15..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:34 Download gff for
BO10409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..855 | 14..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:32 Download gff for
BO10409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..855 | 14..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:32 Download gff for
BO10409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10691172..10691878 | 14..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:34 Download gff for
BO10409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10684272..10684978 | 14..721 | 99 | | Minus |
BO10409.5prime Sequence
731 bp (730 high quality bases) assembled on 2006-04-19
> BO10409.5prime
GAAGTTATCAGTCGACATGATAAGCTTTCTGTTCATTGTAAATCGGGCGC
TCAGCAGCAGCAGCAGCAGTAGCAGTGCAGCGGCATCCTTAACGAGCAAG
AAGATGACCGCCCCCGGGCCACGCCCCCTTGTCCTATGCGGTCCCTCGGG
ATCCGGAAAGAGTACGCTGCTGAAAAGGCTATTCGCCGAATTCCCCAGCA
CCTTTGGCTTCAGCATATCGCACACCACGCGGAAGCCGCGTGAGGGCGAG
GAGCATGGCGTGCACTACTATTTTGTGGAACGTCCGGAAATGGAGGCAGC
CATCGCTGGCGACGAGTTCATCGAGACGGCCGAGTTTACGGGCAATCTTT
ATGGAACGAGCAAGGCGGCGGTTAGAGAGATCCAGGCACAGGGACGGGTC
TGCATACTGGACATCGAACAGAAGGGAGTGGAGCAGATCAAGCGTACGGA
TCTCAATCCCATACTGATATTCAACAATCCACCGAGCATCAAGGAGCTGG
AGCGACGACTTCGCAAACGTGGCTCCGAAACGGAGGAGTCGCTGAGCAAG
CGCCTCAATGCCGCTCAGGTGGAGCTCGATTATGGTTTGACGCCCGGCAA
CTTCCACAAGATCATCAATAACGTGGACATCGATGTGGCCTACGAGGAAT
TCCGCAACTTTGTCGTCCAGGAACTCAAGGAGCAGCAGAAGCAGGGAGTA
TCAGTTAACTTGAATGCAAGCTTTCTAGACC
BO10409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-PA | 702 | CG11811-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 1575 | CG11811-RA | 153..851 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10691176..10691874 | 17..715 | 3495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:09:58 has no hits.
BO10409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:55 Download gff for
BO10409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:37 Download gff for
BO10409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:33 Download gff for
BO10409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..855 | 13..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:45:30 Download gff for
BO10409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..855 | 13..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:45:30 Download gff for
BO10409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10691172..10691878 | 13..720 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:33 Download gff for
BO10409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10684272..10684978 | 13..720 | 99 | | Plus |
BO10409.complete Sequence
733 bp (733 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631739
> BO10409.complete
GAAGTTATCAGTCGACATGATAAGCTTTCTGTTCATTGTAAATCGGGCGC
TCAGCAGCAGCAGCAGCAGTAGCAGTGCAGCGGCATCCTTAACGAGCAAG
AAGATGACCGCCCCCGGGCCACGCCCCCTTGTCCTATGCGGTCCCTCGGG
ATCCGGAAAGAGTACGCTGCTGAAAAGGCTATTCGCCGAATTCCCCAGCA
CCTTTGGCTTCAGCATATCGCACACCACGCGGAAGCCGCGTGAGGGCGAG
GAGCATGGCGTGCACTACTATTTTGTGGAACGTCCGGAAATGGAGGCAGC
CATCGCTGGCGACGAGTTCATCGAGACGGCCGAGTTTACGGGCAATCTTT
ATGGAACGAGCAAGGCGGCGGTTAGAGAGATCCAGGCACAGGGACGGGTC
TGCATACTGGACATCGAACAGAAGGGAGTGGAGCAGATCAAGCGTACGGA
TCTCAATCCCATACTGATATTCAACAATCCACCGAGCATCAAGGAGCTGG
AGCGACGACTTCGCAAACGTGGCTCCGAAACGGAGGAGTCGCTGAGCAAG
CGCCTCAATGCCGCTCAGGTGGAGCTCGATTATGGTTTGACGCCCGGCAA
CTTCCACAAGATCATCAATAACGTGGACATCGATGTGGCCTACGAGGAAT
TCCGCAACTTTGTCGTCCAGGAACTCAAGGAGCAGCAGAAGCAGGGAGTA
TCAGTTAACTTGAATGCAAGCTTTCTAGACCAT
BO10409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 702 | CG11811-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 1575 | CG11811-RA | 153..851 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10691176..10691874 | 17..715 | 3495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:35:40 has no hits.
BO10409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:32 Download gff for
BO10409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 1..702 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:02 Download gff for
BO10409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 156..862 | 13..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:15:05 Download gff for
BO10409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 153..851 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:32 Download gff for
BO10409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 156..862 | 13..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:53 Download gff for
BO10409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 153..851 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:53 Download gff for
BO10409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10691176..10691874 | 17..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:15:05 Download gff for
BO10409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10684276..10684974 | 17..717 | 99 | | Plus |
BO10409.pep Sequence
Translation from 16 to 733
> BO10409.pep
MISFLFIVNRALSSSSSSSSAAASLTSKKMTAPGPRPLVLCGPSGSGKST
LLKRLFAEFPSTFGFSISHTTRKPREGEEHGVHYYFVERPEMEAAIAGDE
FIETAEFTGNLYGTSKAAVREIQAQGRVCILDIEQKGVEQIKRTDLNPIL
IFNNPPSIKELERRLRKRGSETEESLSKRLNAAQVELDYGLTPGNFHKII
NNVDIDVAYEEFRNFVVQELKEQQKQGVSVNLNASFLDH
BO10409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-PA | 233 | CG11811-PA | 1..233 | 1..233 | 1176 | 100 | Plus |
| sdt-PF | 859 | CG32717-PF | 659..832 | 36..211 | 262 | 33.7 | Plus |
| sdt-PK | 879 | CG32717-PK | 679..852 | 36..211 | 262 | 33.7 | Plus |
| sdt-PD | 879 | CG32717-PD | 679..852 | 36..211 | 262 | 33.7 | Plus |
| sdt-PH | 934 | CG32717-PH | 734..907 | 36..211 | 262 | 33.7 | Plus |
