Clone Sequence Records
BO10410.3prime Sequence
927 bp (841 high quality bases) assembled on 2006-04-19
> BO10410.3prime
ATGGTCTAGAAAGCTTGCATCCTTAGCGGTAATTGCCACTGGAGGAAATT
GTCGCTCATCGTAGAGCTTTGTTGGAGTGTCGATGGCATCGCAAAGCTTG
CGAAACTTGGCAGAATCAGACATTGCATCTGCCTGGTCACCTTTCAGGAT
GCTTGCATAGCTGTTGTCTTGCATCGGATCCGGATTCTCGATGAGCACAC
TAGCCGCACAGCTCTTTAGCATCGTAAGCGAAGGCTGCGTCACAGTTGAC
GGATTCGAAGGCTTAGTCTGCGACCTTTGCACGCTTTCGCTCAGCTCAAG
CTCTATTACATCCTCCAGGGCTCCGCGCAAGTCGTGGACAGACATCAGTT
TACAGGGACCACCCCGTTCCGCAGGAAACTCGTGCACGTACAGGAATCCG
TCCTCGCACGCAATCAGCAGACGTGGCTCCTTCTGAACACGGGTCAGGGC
ACAGATGTGCTTTAGGCCGCCCTGAGCCAGCTGCACCGTAGCAAAGGATC
GGTCCTGAGCTAATACTTCGCTGACTTGCGTGGGCAGCAGCAAAGATGAC
ACAGCCTTGGAAAACATTCCGCCCCAGGAAGCGACAGGTCTACAGCTCTC
CTCTGCTGCTGTGGATGCCACTGCTTCCTTGGCAGAATTTTCGGACTTGG
CAGCTACATCGGCTATCGCTTTCAGCTCAACCGTCTCCACTGCCCGCGTA
TCGATCTTGAAAACGTGGACGGTCTCCGTGTTGGAGGAGGCGCAGAGGAA
GTCTCCACTGGCCGAGAAGACCAGTGAGGCAATGCGGACACAGCTGACGC
CCCTCCGGAATTCCTGCACCCGCTGGCCATTTTTTACACAAAAGACCCGG
ATGACGGTCCCGCGCTCGGAGGCGGTGGCCAGCAGAGCTCCGCTGGGCGA
GAAAGCGAGAGCTGAAAAGGACGTGTC
BO10410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8678-PA | 1416 | CG8678-RA | 505..1413 | 927..19 | 4495 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 2435 | CG8678-RB | 780..1688 | 927..19 | 4515 | 99.8 | Minus |
Atg18b-RA | 2064 | CG8678-RA | 780..1688 | 927..19 | 4515 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21213223..21213771 | 117..665 | 2745 | 100 | Plus |
2L | 23513712 | 2L | 21213917..21214181 | 663..927 | 1295 | 99.2 | Plus |
2L | 23513712 | 2L | 21213069..21213167 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:14:27 has no hits.
BO10410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:56 Download gff for
BO10410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 505..1416 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:38 Download gff for
BO10410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 505..1416 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:15 Download gff for
BO10410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 780..1693 | 12..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:50:57 Download gff for
BO10410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18b-RA | 780..1693 | 12..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:50:57 Download gff for
BO10410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21213064..21213166 | 12..116 | 96 | <- | Plus |
2L | 21213223..21213768 | 117..662 | 100 | <- | Plus |
2L | 21213917..21214181 | 663..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:15 Download gff for
BO10410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21213064..21213166 | 12..116 | 96 | <- | Plus |
arm_2L | 21213223..21213768 | 117..662 | 100 | <- | Plus |
arm_2L | 21213917..21214181 | 663..927 | 99 | | Plus |
BO10410.5prime Sequence
845 bp (773 high quality bases) assembled on 2006-04-19
> BO10410.5prime
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAG
BO10410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8678-PA | 1416 | CG8678-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 2435 | CG8678-RB | 276..1104 | 17..845 | 4145 | 100 | Plus |
Atg18b-RA | 2064 | CG8678-RA | 276..1104 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21213917..21214647 | 785..55 | 3655 | 100 | Minus |
2L | 23513712 | 2L | 21213709..21213771 | 845..783 | 315 | 100 | Minus |
2L | 23513712 | 2L | 21220260..21220297 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:35:05 has no hits.
BO10410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:57 Download gff for
BO10410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:39 Download gff for
BO10410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:47 Download gff for
BO10410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 271..1104 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:27 Download gff for
BO10410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18b-RA | 271..1104 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:27 Download gff for
BO10410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21213709..21213768 | 786..845 | 100 | <- | Minus |
2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
2L | 21220260..21220302 | 9..54 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:47 Download gff for
BO10410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21213709..21213768 | 786..845 | 100 | <- | Minus |
arm_2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
arm_2L | 21220260..21220302 | 9..54 | 93 | | Minus |
BO10410.complete Sequence
1447 bp (1447 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631740
> BO10410.complete
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAG
AGCTGTAGACCTGTCGCTTCCTGGGGCGGAATGTTTTCCAAGGCTGTGTC
ATCTTTGCTGCTGCCCACGCAAGTCAGCGAAGTATTAGCTCAGGACCGAT
CCTTTGCTACGGTGCAGCTGGCTCAGGGCGGCCTAAAGCACATCTGTGCC
CTGACCCGTGTTCAGAAGGAGCCACGTCTGCTGATTGCGTGCGAGGACGG
ATTCCTGTACGTGCACGAGTTTCCTGCGGAACGGGGTGGTCCCTGTAAAC
TGATGTCTGTCCACGACTTGCGCGGAGCCCTGGAGGATGTAATAGAGCTT
GAGCTGAGCGAAAGCGTGCAAAGGTCGCAGACTAAGCCTTCGAATCCGTC
AACTGTGACGCAGCCTTCGCTTACGATGCTAAAGAGCTGTGCGGCTAGTG
TGCTCATCGAGAATCCGGATCCGATGCAAGACAACAGCTATGCAAGCATC
CTGAAAGGTGACCAGGCAGATGCAATGTCTGATTCTGCCAAGTTTCGCAA
GCTTTGCGATGCCATCGACACTCCAACAAAGCTCTACGATGAGCGACAAT
TTCCTCCAGTGGCAATTACCGCTAAGGATGCAAGCTTTCTAGACCAT
BO10410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 1416 | CG8678-PB | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Atg18b-RA | 1416 | CG8678-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 2435 | CG8678-RB | 276..1688 | 17..1429 | 7065 | 100 | Plus |
Atg18b-RA | 2064 | CG8678-RA | 276..1688 | 17..1429 | 7065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21213917..21214647 | 785..55 | 3655 | 100 | Minus |
2L | 23513712 | 2L | 21213223..21213771 | 1331..783 | 2745 | 100 | Minus |
2L | 23513712 | 2L | 21213069..21213167 | 1429..1331 | 495 | 100 | Minus |
2L | 23513712 | 2L | 21220260..21220297 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:58 has no hits.
BO10410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:53 Download gff for
BO10410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 1..1416 | 17..1432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:29 Download gff for
BO10410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 266..1688 | 9..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:29 Download gff for
BO10410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 276..1688 | 17..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:53 Download gff for
BO10410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 266..1688 | 9..1436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:59 Download gff for
BO10410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18b-RA | 276..1688 | 17..1431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:59 Download gff for
BO10410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21213065..21213166 | 1332..1431 | 98 | <- | Minus |
2L | 21213223..21213768 | 786..1331 | 100 | <- | Minus |
2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
2L | 21220260..21220297 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:29 Download gff for
BO10410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21213065..21213166 | 1332..1431 | 98 | <- | Minus |
arm_2L | 21213223..21213768 | 786..1331 | 100 | <- | Minus |
arm_2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
arm_2L | 21220260..21220297 | 17..54 | 100 | | Minus |
BO10410.pep Sequence
Translation from 16 to 1447
> BO10410.pep
MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE
RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI
VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE
LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK
NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET
VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP
TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH
EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP
SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI
DTPTKLYDERQFPPVAITAKDASFLDH
BO10410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-PB | 471 | CG8678-PB | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18b-PA | 471 | CG8678-PA | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18a-PD | 435 | CG7986-PD | 17..427 | 6..432 | 812 | 42.8 | Plus |
Atg18a-PF | 372 | CG7986-PF | 17..369 | 6..380 | 807 | 45.9 | Plus |
Atg18a-PG | 377 | CG7986-PG | 17..374 | 6..380 | 794 | 45.6 | Plus |