Clone BO10410 Report

Search the DGRC for BO10410

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG8678-RA
Protein status:BO10410.pep: validated full length
Sequenced Size:1447

Clone Sequence Records

BO10410.3prime Sequence

927 bp (841 high quality bases) assembled on 2006-04-19

> BO10410.3prime
ATGGTCTAGAAAGCTTGCATCCTTAGCGGTAATTGCCACTGGAGGAAATT
GTCGCTCATCGTAGAGCTTTGTTGGAGTGTCGATGGCATCGCAAAGCTTG
CGAAACTTGGCAGAATCAGACATTGCATCTGCCTGGTCACCTTTCAGGAT
GCTTGCATAGCTGTTGTCTTGCATCGGATCCGGATTCTCGATGAGCACAC
TAGCCGCACAGCTCTTTAGCATCGTAAGCGAAGGCTGCGTCACAGTTGAC
GGATTCGAAGGCTTAGTCTGCGACCTTTGCACGCTTTCGCTCAGCTCAAG
CTCTATTACATCCTCCAGGGCTCCGCGCAAGTCGTGGACAGACATCAGTT
TACAGGGACCACCCCGTTCCGCAGGAAACTCGTGCACGTACAGGAATCCG
TCCTCGCACGCAATCAGCAGACGTGGCTCCTTCTGAACACGGGTCAGGGC
ACAGATGTGCTTTAGGCCGCCCTGAGCCAGCTGCACCGTAGCAAAGGATC
GGTCCTGAGCTAATACTTCGCTGACTTGCGTGGGCAGCAGCAAAGATGAC
ACAGCCTTGGAAAACATTCCGCCCCAGGAAGCGACAGGTCTACAGCTCTC
CTCTGCTGCTGTGGATGCCACTGCTTCCTTGGCAGAATTTTCGGACTTGG
CAGCTACATCGGCTATCGCTTTCAGCTCAACCGTCTCCACTGCCCGCGTA
TCGATCTTGAAAACGTGGACGGTCTCCGTGTTGGAGGAGGCGCAGAGGAA
GTCTCCACTGGCCGAGAAGACCAGTGAGGCAATGCGGACACAGCTGACGC
CCCTCCGGAATTCCTGCACCCGCTGGCCATTTTTTACACAAAAGACCCGG
ATGACGGTCCCGCGCTCGGAGGCGGTGGCCAGCAGAGCTCCGCTGGGCGA
GAAAGCGAGAGCTGAAAAGGACGTGTC

BO10410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8678-PA 1416 CG8678-RA 505..1413 927..19 4495 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 2435 CG8678-RB 780..1688 927..19 4515 99.8 Minus
Atg18b-RA 2064 CG8678-RA 780..1688 927..19 4515 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213223..21213771 117..665 2745 100 Plus
2L 23513712 2L 21213917..21214181 663..927 1295 99.2 Plus
2L 23513712 2L 21213069..21213167 19..117 495 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:14:27 has no hits.

BO10410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:56 Download gff for BO10410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 505..1416 16..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:38 Download gff for BO10410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 505..1416 16..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:15 Download gff for BO10410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 780..1693 12..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:50:57 Download gff for BO10410.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 780..1693 12..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:50:57 Download gff for BO10410.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21213064..21213166 12..116 96 <- Plus
2L 21213223..21213768 117..662 100 <- Plus
2L 21213917..21214181 663..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:15 Download gff for BO10410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21213064..21213166 12..116 96 <- Plus
arm_2L 21213223..21213768 117..662 100 <- Plus
arm_2L 21213917..21214181 663..927 99   Plus

BO10410.5prime Sequence

845 bp (773 high quality bases) assembled on 2006-04-19

> BO10410.5prime
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAG

BO10410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8678-PA 1416 CG8678-RA 1..829 17..845 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 2435 CG8678-RB 276..1104 17..845 4145 100 Plus
Atg18b-RA 2064 CG8678-RA 276..1104 17..845 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213917..21214647 785..55 3655 100 Minus
2L 23513712 2L 21213709..21213771 845..783 315 100 Minus
2L 23513712 2L 21220260..21220297 54..17 190 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:35:05 has no hits.

BO10410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:57 Download gff for BO10410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:39 Download gff for BO10410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:47 Download gff for BO10410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 271..1104 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:27 Download gff for BO10410.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 271..1104 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:27 Download gff for BO10410.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21213709..21213768 786..845 100 <- Minus
2L 21213917..21214647 55..785 100 <- Minus
2L 21220260..21220302 9..54 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:47 Download gff for BO10410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21213709..21213768 786..845 100 <- Minus
arm_2L 21213917..21214647 55..785 100 <- Minus
arm_2L 21220260..21220302 9..54 93   Minus

BO10410.complete Sequence

1447 bp (1447 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631740

> BO10410.complete
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAG
AGCTGTAGACCTGTCGCTTCCTGGGGCGGAATGTTTTCCAAGGCTGTGTC
ATCTTTGCTGCTGCCCACGCAAGTCAGCGAAGTATTAGCTCAGGACCGAT
CCTTTGCTACGGTGCAGCTGGCTCAGGGCGGCCTAAAGCACATCTGTGCC
CTGACCCGTGTTCAGAAGGAGCCACGTCTGCTGATTGCGTGCGAGGACGG
ATTCCTGTACGTGCACGAGTTTCCTGCGGAACGGGGTGGTCCCTGTAAAC
TGATGTCTGTCCACGACTTGCGCGGAGCCCTGGAGGATGTAATAGAGCTT
GAGCTGAGCGAAAGCGTGCAAAGGTCGCAGACTAAGCCTTCGAATCCGTC
AACTGTGACGCAGCCTTCGCTTACGATGCTAAAGAGCTGTGCGGCTAGTG
TGCTCATCGAGAATCCGGATCCGATGCAAGACAACAGCTATGCAAGCATC
CTGAAAGGTGACCAGGCAGATGCAATGTCTGATTCTGCCAAGTTTCGCAA
GCTTTGCGATGCCATCGACACTCCAACAAAGCTCTACGATGAGCGACAAT
TTCCTCCAGTGGCAATTACCGCTAAGGATGCAAGCTTTCTAGACCAT

BO10410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 1416 CG8678-PB 1..1413 17..1429 7065 100 Plus
Atg18b-RA 1416 CG8678-PA 1..1413 17..1429 7065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 2435 CG8678-RB 276..1688 17..1429 7065 100 Plus
Atg18b-RA 2064 CG8678-RA 276..1688 17..1429 7065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213917..21214647 785..55 3655 100 Minus
2L 23513712 2L 21213223..21213771 1331..783 2745 100 Minus
2L 23513712 2L 21213069..21213167 1429..1331 495 100 Minus
2L 23513712 2L 21220260..21220297 54..17 190 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:14:58 has no hits.

BO10410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:53 Download gff for BO10410.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 1..1416 17..1432 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:29 Download gff for BO10410.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 266..1688 9..1436 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:29 Download gff for BO10410.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 276..1688 17..1431 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:53 Download gff for BO10410.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 266..1688 9..1436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:59 Download gff for BO10410.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 276..1688 17..1431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:59 Download gff for BO10410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21213065..21213166 1332..1431 98 <- Minus
2L 21213223..21213768 786..1331 100 <- Minus
2L 21213917..21214647 55..785 100 <- Minus
2L 21220260..21220297 17..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:29 Download gff for BO10410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21213065..21213166 1332..1431 98 <- Minus
arm_2L 21213223..21213768 786..1331 100 <- Minus
arm_2L 21213917..21214647 55..785 100 <- Minus
arm_2L 21220260..21220297 17..54 100   Minus

BO10410.pep Sequence

Translation from 16 to 1447

> BO10410.pep
MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE
RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI
VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE
LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK
NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET
VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP
TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH
EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP
SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI
DTPTKLYDERQFPPVAITAKDASFLDH

BO10410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-PB 471 CG8678-PB 1..471 1..471 2381 100 Plus
Atg18b-PA 471 CG8678-PA 1..471 1..471 2381 100 Plus
Atg18a-PD 435 CG7986-PD 17..427 6..432 812 42.8 Plus
Atg18a-PF 372 CG7986-PF 17..369 6..380 807 45.9 Plus
Atg18a-PG 377 CG7986-PG 17..374 6..380 794 45.6 Plus