Clone Sequence Records
BO10411.3prime Sequence
936 bp (845 high quality bases) assembled on 2006-04-19
> BO10411.3prime
ATGGTCTAGAAAGCTTGCCTTGAATTGCGGTCGCCGTGTGCCGATGGCCT
CCAGTTTCCGCTTGAGCAGATCGTTGTCCAGGTCGATCTGGCGCTGATTC
TTCTTCCGGTTCACAGCTGCGCTGGACAGTCGTGGCGCTGGAGGTGTCTG
TCGCTTCTCGGGCCCATTGATCTTTATGCTACTGGTGCTAGCCTTGATCG
TCGCCGTGGGCTTCACAGTCATCATCTTGCGCAAAAGAATCTGATTCTGG
CGCTCGATCTCGCGCACTTGGGGATTCGTAAAGCTAAAGCTTTTGCGCCC
AAGGTTTTTATAGTTAATCTTATCATTAGAGCAGCGGGAACGCGACACAT
TGATTTGATACTCGCAACCGTCGCTGTTGAAGGTGCTTGGAGTTCCGCTA
ACGGCTCGCCTGTTTAACTCCATTGGTTTGCGCTGTTGTGGATGCCTCAT
GAGTCCGTCGCCCTGGCCACATTCGTCTACGAGGTAGCCTTCGCCCAAGC
CGAAGTTCGCTGCCAGGTCATGGGGCAACTCGTGACCCATATCCAGTTTC
TGCTCGTGTTCAATTAAATCCGATTCCGAGGGACATCTGCATTTGGGTCT
GGGTAGCTTGGAAGATCGCGTCGTGAGTAGTGCCTCCTGAGAACGCTCCA
TCCGCATTGTCAGGGGGGGAATTCCTCCACCCAAGCTCCTAGCACTGGTC
ATAGTCGTTTCCGTCATCGATGACATCTCGGATTCAGTGTCCCCGCGCCT
GTCACTTCGTTGCTGCAACATCTCCGTGGCCATGGCAAGCTGCTCGAAGG
CTTGGCTATTTGGCGCTCCTCCATTGATCTGGAATGACTTCATGATCAAT
TCCGACATTTGGGTCATCTGCTGCTCCAGGTACCGAACCCTCGCCAGATC
GGGCTGTGATGTTGGCATGTGTTCTTCTGTTTGATT
BO10411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7669-PA | 1815 | CG7669-RA | 895..1812 | 936..19 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hmw-RA | 2041 | CG7669-RA | 1027..1944 | 936..19 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18363147..18363769 | 936..314 | 3115 | 100 | Minus |
| 3R | 32079331 | 3R | 18363824..18363983 | 313..154 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 18364044..18364180 | 155..19 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:58:36 has no hits.
BO10411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:58 Download gff for
BO10411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-PA | 895..1815 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:41 Download gff for
BO10411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-PA | 895..1815 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:28:43 Download gff for
BO10411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 1027..1950 | 13..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:23:27 Download gff for
BO10411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hmw-RA | 1027..1950 | 13..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:23:27 Download gff for
BO10411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18363147..18363769 | 314..936 | 100 | -> | Minus |
| 3R | 18363824..18363983 | 154..313 | 100 | -> | Minus |
| 3R | 18364046..18364186 | 14..153 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:28:43 Download gff for
BO10411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14188869..14189491 | 314..936 | 100 | -> | Minus |
| arm_3R | 14189546..14189705 | 154..313 | 100 | -> | Minus |
| arm_3R | 14189768..14189908 | 14..153 | 97 | -> | Minus |
BO10411.5prime Sequence
913 bp (849 high quality bases) assembled on 2006-04-19
> BO10411.5prime
GAAGTTATCAGTCGACATGTCGGGGGCTGGAGAACACTCAGATGAAGAGT
CCTATGGAGAGGAGTCCTTCGAGGAGGACTCGGAGTCGGAGGTGGAGGTG
GAGGAAGAAGAGATTGAGTATATTGAGCCAGAGGAGTCAAAACCAAGTGA
CGCTCTTCTGTTGGGGGAGAGCGACACCCAAAGCGAGAGCGATGTGAAAG
AAGAGTTTCTTAGCGGCAACCCACACGCCCGTCGCTATTTGGGCGCCCGA
GTGGTGTCCTACCTGAGTTCCTCCTCTGACGACGAAAGCCAAGTGGTCAT
CACCAAGACGGTAGCCGAGGTAAATCAACTAAGTCTGCGAGTGGACACGC
CTCCGGAGGATGAGACGCCCTCGGTGCGCACTCTGATGCCAGGCAGTGCC
CATTCTCGGGTTAAGGATGAGGACGAGGCTGAAGACGAGGATGATGACGA
AGGTGATGGCGAAAATGATAACGATAATGAGGACGAGAATGATGACGAGG
ATGCTGAAGTCGAGGAAATCGAAGAAGAGGAGGAAGAAATTCCAGGAGAC
GAAGACGACGCCCAAAGCGATGGATCCATGGGTCGTCAATCCGCCGACGA
CAGCGACGAGGAGGAGGGCACGGATGTGGAAGTGGAGCAGCTGGAGGAGG
ACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTA
CCACCGCCCCAGAAGGACATTGTTTCGCTGGTCGATGCCAGTGATAACAG
TAGTGAGCACAGTGTGGTCACCATGTGTGCATCAGGAGACGAAACAGACA
ACACCTTGGTGAAGTATCCTAGATTACGAAAGCAGCAACCACTTACTGCT
AAGGATTCGCAATCGCTAAAAGAGCAGGAAGACCCGGAAGAACCGGAACA
ACCCGAAGAAATC
BO10411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7669-PA | 1815 | CG7669-RA | 1..895 | 17..911 | 4450 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hmw-RA | 2041 | CG7669-RA | 133..1027 | 17..911 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18362402..18363016 | 221..835 | 3075 | 100 | Plus |
| 3R | 32079331 | 3R | 18362126..18362329 | 17..220 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 18363069..18363147 | 833..911 | 380 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:35:00 has no hits.
BO10411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:38:59 Download gff for
BO10411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-PA | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:42 Download gff for
BO10411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-PA | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:45 Download gff for
BO10411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 129..1030 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:12 Download gff for
BO10411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hmw-RA | 129..1030 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:12 Download gff for
BO10411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18362122..18362329 | 9..220 | 98 | -> | Plus |
| 3R | 18362402..18363016 | 221..835 | 100 | -> | Plus |
| 3R | 18363072..18363150 | 836..913 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:45 Download gff for
BO10411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14187844..14188051 | 9..220 | 98 | -> | Plus |
| arm_3R | 14188124..14188738 | 221..835 | 100 | -> | Plus |
| arm_3R | 14188794..14188872 | 836..913 | 97 | | Plus |
BO10411.complete Sequence
1846 bp (1846 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631741
> BO10411.complete
GAAGTTATCAGTCGACATGTCGGGGGCTGGAGAACACTCAGATGAAGAGT
CCTATGGAGAGGAGTCCTTCGAGGAGGACTCGGAGTCGGAGGTGGAGGTG
GAGGAAGAAGAGATTGAGTATATTGAGCCAGAGGAGTCAAAACCAAGTGA
CGCTCTTCTGTTGGGGGAGAGCGACACCCAAAGCGAGAGCGATGTGAAAG
AAGAGTTTCTTAGCGGCAACCCACACGCCCGTCGCTATTTGGGCGCCCGA
GTGGTGTCCTACCTGAGTTCCTCCTCTGACGACGAAAGCCAAGTGGTCAT
CACCAAGACGGTAGCCGAGGTAAATCAACTAAGTCTGCGAGTGGACACGC
CTCCGGAGGATGAGACGCCCTCGGTGCGCACTCTGATGCCAGGCAGTGCC
CATTCTCGGGTTAAGGATGAGGACGAGGCTGAAGACGAGGATGATGACGA
AGGTGATGGCGAAAATGATAACGATAATGAGGACGAGAATGATGACGAGG
ATGCTGAAGTCGAGGAAATCGAAGAAGAGGAGGAAGAAATTCCAGGAGAC
GAAGACGACGCCCAAAGCGATGGATCCATGGGTCGTCAATCCGCCGACGA
CAGCGACGAGGAGGAGGGCACGGATGTGGAAGTGGAGCAGCTGGAGGAGG
ACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTA
CCACCGCCCCAGAAGGACATTGTTTCGCTGGTCGATGCCAGTGATAACAG
TAGTGAGCACAGTGTGGTCACCATGTGTGCATCAGGAGACGAAACAGACA
ACACCTTGGTGAAGTATCCTAGATTACGAAAGCAGCAACCACTTACTGCT
AAGGATTCGCAATCGCTAAAAGAGCAGGAAGAACCGGAAGAACCGGAACA
ACCCGAAGAAAATCAAACAGAAGAACACATGCCAACATCACAGCCCGATC
TGGCGAGGGTTCGGTACCTGGAGCAGCAGATGACCCAAATGTCGGAATTG
ATCATGAAGTCATTCCAGATCAATGGAGGAGCGCCAAATAGCCAAGCCTT
CGAGCAGCTTGCCATGGCCACGGAGATGTTGCAGCAACGAAGTGACAGGC
GCGGGGACACTGAATCCGAGATGTCATCGATGACGGAAACGACTATGACC
AGTGCTAGGAGCTTGGGTGGAGGAATTCCCCCCCTGACAATGCGGATGGA
GCGTTCTCAGGAGGCACTACTCACGACGCGATCTTCCAAGCTACCCAGAC
CCAAATGCAGATGTCCCTCGGAATCGGATTTAATTGAACACGAGCAGAAA
CTGGATATGGGTCACGAGTTGCCCCATGACCTGGCAGCGAACTTCGGCTT
GGGCGAAGGCTACCTCGTAGACGAATGTGGCCAGGGCGACGGACTCATGA
GGCATCCACAACAGCGCAAACCAATGGAGTTAAACAGGCGAGCCGTTAGC
GGAACTCCAAGCACCTTCAACAGCGACGGTTGCGAGTATCAAATCAATGT
GTCGCGTTCCCGCTGCTCTAATGATAAGATTAACTATAAAAACCTTGGGC
GCAAAAGCTTTAGCTTTACGAATCCCCAAGTGCGCGAGATCGAGCGCCAG
AATCAGATTCTTTTGCGCAAGATGATGACTGTGAAGCCCACGGCGACGAT
CAAGGCTAGCACCAGTAGCATAAAGATCAATGGGCCCGAGAAGCGACAGA
CACCTCCAGCGCCACGACTGTCCAGCGCAGCTGTGAACCGGAAGAAGAAT
CAGCGCCAGATCGACCTGGACAACGATCTGCTCAAGCGGAAACTGGAGGC
CATCGGCACACGGCGACCGCAATTCAAGGCAAGCTTTCTAGACCAT
BO10411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hmw-RA | 1815 | CG7669-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hmw-RA | 2041 | CG7669-RA | 133..1944 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18363069..18363769 | 833..1533 | 3505 | 100 | Plus |
| 3R | 32079331 | 3R | 18362402..18363016 | 221..835 | 3075 | 100 | Plus |
| 3R | 32079331 | 3R | 18362126..18362329 | 17..220 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 18363824..18363983 | 1534..1693 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 18364044..18364180 | 1692..1828 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:33 has no hits.
BO10411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:47 Download gff for
BO10411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 1..1815 | 17..1831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:14 Download gff for
BO10411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 129..1950 | 9..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:13 Download gff for
BO10411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 133..1944 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:48 Download gff for
BO10411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 129..1950 | 9..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:57 Download gff for
BO10411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hmw-RA | 133..1944 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:57 Download gff for
BO10411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18362126..18362329 | 17..220 | 100 | -> | Plus |
| 3R | 18362402..18363016 | 221..835 | 100 | -> | Plus |
| 3R | 18363072..18363769 | 836..1533 | 100 | -> | Plus |
| 3R | 18363824..18363983 | 1534..1693 | 100 | -> | Plus |
| 3R | 18364046..18364180 | 1694..1830 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:13 Download gff for
BO10411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14187848..14188051 | 17..220 | 100 | -> | Plus |
| arm_3R | 14188124..14188738 | 221..835 | 100 | -> | Plus |
| arm_3R | 14188794..14189491 | 836..1533 | 100 | -> | Plus |
| arm_3R | 14189546..14189705 | 1534..1693 | 100 | -> | Plus |
| arm_3R | 14189768..14189902 | 1694..1830 | 98 | | Plus |
BO10411.pep Sequence
Translation from 16 to 1846
> BO10411.pep
MSGAGEHSDEESYGEESFEEDSESEVEVEEEEIEYIEPEESKPSDALLLG
ESDTQSESDVKEEFLSGNPHARRYLGARVVSYLSSSSDDESQVVITKTVA
EVNQLSLRVDTPPEDETPSVRTLMPGSAHSRVKDEDEAEDEDDDEGDGEN
DNDNEDENDDEDAEVEEIEEEEEEIPGDEDDAQSDGSMGRQSADDSDEEE
GTDVEVEQLEEDEPIVTAVCKKTVQKELPPPQKDIVSLVDASDNSSEHSV
VTMCASGDETDNTLVKYPRLRKQQPLTAKDSQSLKEQEEPEEPEQPEENQ
TEEHMPTSQPDLARVRYLEQQMTQMSELIMKSFQINGGAPNSQAFEQLAM
ATEMLQQRSDRRGDTESEMSSMTETTMTSARSLGGGIPPLTMRMERSQEA
LLTTRSSKLPRPKCRCPSESDLIEHEQKLDMGHELPHDLAANFGLGEGYL
VDECGQGDGLMRHPQQRKPMELNRRAVSGTPSTFNSDGCEYQINVSRSRC
SNDKINYKNLGRKSFSFTNPQVREIERQNQILLRKMMTVKPTATIKASTS
SIKINGPEKRQTPPAPRLSSAAVNRKKNQRQIDLDNDLLKRKLEAIGTRR
PQFKASFLDH
BO10411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hmw-PA | 604 | CG7669-PA | 1..604 | 1..604 | 3096 | 100 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 740..920 | 114..311 | 169 | 25.7 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 740..920 | 114..311 | 169 | 25.7 | Plus |
| Sh3beta-PE | 485 | CG8582-PE | 179..473 | 4..311 | 160 | 20.9 | Plus |
