Clone BO10416 Report

Search the DGRC for BO10416

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG7470-RA
Protein status:BO10416.pep: validated full length
Sequenced Size:2362

Clone Sequence Records

BO10416.3prime Sequence

839 bp (837 high quality bases) assembled on 2006-04-19

> BO10416.3prime
ATGGTCTAGAAAGCTTGCGTCCAGCGGCAGGGTTTCGTGCAGCCACGTGC
GGCCACCTCCCTCGGCGAAGTCGGCGGCGGCATGGTCCTGCCCCTCGAGG
ATCCACTTGGTGGTCAGCAGCCCCTCCACTCCCACAGGCCCGCGGGCGTG
GATCCGGGCAGTGGAGATGCCCACCTCGGCACCAAGGCCAAACCGGAAAC
CGTCCGCAAACCGGGAGCTGGCGTTGTGGAACACACAGGCGCTGTCCACG
CTGCCCAGGAACTGCCTGGCCGCCGCATCATTTTCCGTAACAATGACATC
CGTGTGGCTGCTGCCGTACGTATGGATGTGATTAATGGCCTCGTCCAGGC
TGGGCACAACCTCGATGCAGCACTCGAGGGCGCCGTACTCGTGCTTCAGG
CTCTTGGCCGCCGGCGGGCCAAATGTCAGCTGCTGGTTCAGCCGGGGTCC
GGCATAGATTTTGACGCCCTCACGTTTCAGCATGTTGCAGACATCGCCGA
AGATTGCGCCACTCATCAGGTCCTCGTGGATCAGCAGGGTCTCCATGGCG
TTGCAAGCAGCCGGATAATCGCACTTGGCGTCGCGTGCAATGCGCAGGGC
CTTCTCCAGATCCGCATCCCTGTCGATATAGACGTGGCAGACGCCTTCGG
CGTGGCCCAGCACGGGGATGTGCAGCGACTGCTGCTGGATGCTGCGCACC
AGGTCGGAGGAGCCGCGCGGAATGATCAGGTCGATGTGGTTCTCCATGGA
CAGCAGATCGCTGATCTCCTCGCGCGTGGAAACCAGTGACACGGCGTGCT
CCGCTCCCACGGTGGCCAGCGCCTCCTTGACCAGCTCCA

BO10416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-PA 2331 CG7470-RA 1508..2328 839..19 4105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-RB 4686 CG7470-RB 1653..2473 839..19 4105 100 Minus
CG7470-RA 2868 CG7470-RA 1653..2473 839..19 4105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21980916..21981195 558..279 1400 100 Minus
3L 28110227 3L 21982133..21982393 279..19 1305 100 Minus
3L 28110227 3L 21980631..21980857 784..558 1135 100 Minus
3L 28110227 3L 21980506..21980563 839..782 290 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:14:03 has no hits.

BO10416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:09 Download gff for BO10416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-PA 1509..2331 15..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:55 Download gff for BO10416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-PA 1509..2331 15..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:44:27 Download gff for BO10416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 1654..2476 15..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:23 Download gff for BO10416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 1654..2476 15..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:23 Download gff for BO10416.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21980507..21980561 784..838 100 -> Minus
3L 21980632..21980857 558..783 100 -> Minus
3L 21980917..21981195 279..557 100 -> Minus
3L 21982134..21982396 15..278 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:44:27 Download gff for BO10416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21973607..21973661 784..838 100 -> Minus
arm_3L 21973732..21973957 558..783 100 -> Minus
arm_3L 21974017..21974295 279..557 100 -> Minus
arm_3L 21975234..21975496 15..278 99   Minus

BO10416.5prime Sequence

968 bp (816 high quality bases) assembled on 2006-04-19

> BO10416.5prime
GAAGTTATCAGTCGACATGCTGCAAAACAGTTTCAAACTGGCCCAGAGCC
TTCGAAACGGCTTCTACAGAAACGCCTGGCGAGCGTTCAGCTCCCACGGA
CCCCGGCAGCCACTGGTTTCGCCGGAGCGGCGCTTGGAAAAGGCGCATCC
AACCTTCACGGAAAGGAGTCAGTTGAAGTACGCCCGGAGGCTGGTGGTCA
AGTTGGGCAGTGCAGTCATTACTCGAGAGGACAACCATGGACTAGCCCTC
GGCCGTCTGGCCTCTATTGTGGAGCAGGTTGCCGAGTGCCATTTGGAAGG
ACGTGAAGTGATGATGGTCACCAGCGGAGCGGTGGCCTTTGGAAAGCAGA
AGCTCGCCCAGGAGCTGCTCATGTCGCTGTCCATGCGCGAGACACTAAAC
CCAAAAGATAGCAAAGAGTTTGACGGCGCTACGCTGGAACCGCGAGCAGC
GGCTGCGGTGGGTCAGTCGGGTCTGATGTCCCTCTACGACGCGATGTTTG
CCCAGTACGGCGTCAAGATAGCCCAGGTGCTCGTGACCAAGCCGGACTTT
TACAACGAGGAAACACGCAACAATCTCTTCTGCACGCTCTCCGAATTAAT
TAGCCTGAATATTGTGCCAATCATAAATACTAACGACGCCGTCTCCCCGC
CAATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCCGGAGGGGTATT
CCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGAGGTGCA
GGCGGATCTGCTAATCCTCATGTCGGACGTCGATGGCATCTACAATAAGC
CGCCGTGGGAGGACGGGGCCNAGCTGATGCACACATACACCAGCGACGAC
AGCAACAGCATCGAGTTTGGCAAAAAGTCAAAGGTGGGTACTGGCGGCAT
GGACTCCAAGGTGAGGCAGCCACCTGGGCCCTGGACCGGGGCGTCAGCGT
GGTCATCTGCCACGGAAT

BO10416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-PA 2331 CG7470-RA 1..898 17..914 4471 99.8 Plus
CG7470-PA 2331 CG7470-RA 899..953 914..968 250 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-RB 4686 CG7470-RB 146..1098 17..968 4714 99.7 Plus
CG7470-RA 2868 CG7470-RA 146..1098 17..968 4714 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21977192..21977383 694..885 949 99.5 Plus
3L 28110227 3L 21976966..21977136 525..695 855 100 Plus
3L 28110227 3L 21976295..21976461 113..279 835 100 Plus
3L 28110227 3L 21976582..21976724 276..418 715 100 Plus
3L 28110227 3L 21976784..21976895 417..528 560 100 Plus
3L 28110227 3L 21972147..21972242 17..112 480 100 Plus
3L 28110227 3L 21977433..21977520 882..968 375 97.7 Plus
Blast to na_te.dros performed on 2015-02-12 19:02:07 has no hits.

BO10416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:10 Download gff for BO10416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-PA 1..953 17..968 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:56 Download gff for BO10416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-PA 1..953 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:04 Download gff for BO10416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 146..1098 17..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:05 Download gff for BO10416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 146..1098 17..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:05 Download gff for BO10416.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21977193..21977381 695..883 99 -> Plus
3L 21977435..21977520 884..968 97   Plus
3L 21976968..21977135 527..694 100 -> Plus
3L 21972147..21972242 17..112 100 -> Plus
3L 21976295..21976459 113..277 100 -> Plus
3L 21976584..21976724 278..418 100 -> Plus
3L 21976786..21976893 419..526 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:04 Download gff for BO10416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21965247..21965342 17..112 100 -> Plus
arm_3L 21969395..21969559 113..277 100 -> Plus
arm_3L 21969684..21969824 278..418 100 -> Plus
arm_3L 21969886..21969993 419..526 100 -> Plus
arm_3L 21970068..21970235 527..694 100 -> Plus
arm_3L 21970293..21970481 695..883 99 -> Plus
arm_3L 21970535..21970620 884..968 97   Plus

BO10416.complete Sequence

2362 bp (2362 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631742

> BO10416.complete
GAAGTTATCAGTCGACATGCTGCAAAACAGTTTCAAACTGGCCCAGAGCC
TTCGAAACGGCTTCTACAGAAACGCCTGGCGAGCGTTCAGCTCCCACGGA
CCCCGGCAGCCACTGGTTTCGCCGGAGCGGCGCTTGGAAAAGGCGCATCC
AACCTTCACGGAAAGGAGTCAGTTGAAGTACGCCCGGAGGCTGGTGGTCA
AGTTGGGCAGTGCAGTCATTACTCGAGAGGACAACCATGGACTAGCCCTC
GGCCGTCTGGCCTCTATTGTGGAGCAGGTTGCCGAGTGCCATTTGGAAGG
ACGTGAAGTGATGATGGTCACCAGCGGAGCGGTGGCCTTTGGAAAGCAGA
AGCTCGCCCAGGAGCTGCTCATGTCGCTGTCCATGCGCGAGACACTAAAC
CCAAAAGATAGCAAAGAGTTTGACGGCGCTACGCTGGAACCGCGAGCAGC
GGCTGCGGTGGGTCAGTCGGGTCTGATGTCCCTCTACGACGCGATGTTTG
CCCAGTACGGCGTCAAGATAGCCCAGGTGCTCGTGACCAAGCCGGACTTT
TACAACGAGGAAACACGCAACAATCTCTTCTGCACGCTCTCCGAATTAAT
TAGCCTGAATATTGTGCCAATCATAAATACTAACGACGCCGTCTCCCCGC
CAATGTTCATACGTGACGACGAGCCAGCCGGCGGAGCCCGGAGGGGTATT
CCCATTAAGGACAACGACAGCTTGTCTGCCATGCTGGCCGCCGAGGTGCA
GGCGGATCTGCTAATCCTCATGTCGGACGTCGATGGCATCTACAATAAGC
CGCCGTGGGAGGACGGGGCCAAGCTGATGCACACATACACCAGCGACGAC
AGCAACAGCATCGAGTTTGGCAAAAAGTCAAAGGTGGGTACTGGCGGCAT
GGACTCCAAGGTGAAGGCAGCCACCTGGGCCCTGGACCGGGGCGTCAGCG
TGGTCATCTGCAACGGAATGCAGGAGAAGGCCATCAAAACCATAATTGGC
GGCCGGAAGGTGGGCACCTTCTTCACGGAGGCCACCGAGAGCGCCAATGC
AGTGCCAGTCGAGGTGATGGCCGAGAACGCGCGAACCGGGAGTCGCCAGA
TGCAGGCCCTCACGCCCGCTCAGAGGGCCAGTGCTGTCAACACCCTGGCC
GATCTGTTGGTGAGCCGCGAGAAGTTTATCCTGGACGCCAATGCCAAGGA
CCTGGCCGAGGCGCAGAAGAGCGGACTGGCCAAGCCGTTGCTGTCGCGGC
TCTCGCTCAACCCGGCCAAGCTAAAGAACCTCTCCGTTGGCCTGAAGCAA
ATCGCCGAGGACAGTCACAAGAATGTTGGTCGTGTCCTGAGACGCACCCG
CCTTGCGGATCAGCTGGAGCTCAAGCAGGTCACTGTGCCCATAGGCGTCC
TACTGGTCATCTTCGAATCCCGCCCAGACTCGCTGCCTCAAGTGGCCGCC
TTGGCAATGGCCTCGGCCAACGGACTGCTCCTCAAGGGGGGCAAGGAGGC
GGCACACAGCAACAAGGCCCTTATGGAGCTGGTCAAGGAGGCGCTGGCCA
CCGTGGGAGCGGAGCACGCCGTGTCACTGGTTTCCACGCGCGAGGAGATC
AGCGATCTGCTGTCCATGGAGAACCACATCGACCTGATCATTCCGCGCGG
CTCCTCCGACCTGGTGCGCAGCATCCAGCAGCAGTCGCTGCACATCCCCG
TGCTGGGCCACGCCGAAGGCGTCTGCCACGTCTATATCGACAGGGATGCG
GATCTGGAGAAGGCCCTGCGCATTGCACGCGACGCCAAGTGCGATTATCC
GGCTGCTTGCAACGCCATGGAGACCCTGCTGATCCACGAGGACCTGATGA
GTGGCGCAATCTTCGGCGATGTCTGCAACATGCTGAAACGTGAGGGCGTC
AAAATCTATGCCGGACCCCGGCTGAACCAGCAGCTGACATTTGGCCCGCC
GGCGGCCAAGAGCCTGAAGCACGAGTACGGCGCCCTCGAGTGCTGCATCG
AGGTTGTGCCCAGCCTGGACGAGGCCATTAATCACATCCATACGTACGGC
AGCAGCCACACGGATGTCATTGTTACGGAAAATGATGCGGCGGCCAGGCA
GTTCCTGGGCAGCGTGGACAGCGCCTGTGTGTTCCACAACGCCAGCTCCC
GGTTTGCGGACGGTTTCCGGTTTGGCCTTGGTGCCGAGGTGGGCATCTCC
ACTGCCCGGATCCACGCCCGCGGGCCTGTGGGAGTGGAGGGGCTGCTGAC
CACCAAGTGGATCCTCGAGGGGCAGGACCATGCCGCCGCCGACTTCGCCG
AGGGAGGTGGCCGCACGTGGCTGCACGAAACCCTGCCGCTGGACGCAAGC
TTTCTAGACCAT

BO10416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-RB 2331 CG7470-PB 1..2328 17..2344 11640 100 Plus
CG7470-RA 2331 CG7470-PA 1..2328 17..2344 11640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-RB 4686 CG7470-RB 146..2473 17..2344 11640 100 Plus
CG7470-RA 2868 CG7470-RA 146..2473 17..2344 11640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21980916..21981195 1805..2084 1400 100 Plus
3L 28110227 3L 21980302..21980563 1320..1581 1310 100 Plus
3L 28110227 3L 21982133..21982393 2084..2344 1305 100 Plus
3L 28110227 3L 21978132..21978374 1079..1321 1215 100 Plus
3L 28110227 3L 21980631..21980857 1579..1805 1135 100 Plus
3L 28110227 3L 21977433..21977630 882..1079 990 100 Plus
3L 28110227 3L 21977192..21977383 694..885 960 100 Plus
3L 28110227 3L 21976966..21977136 525..695 855 100 Plus
3L 28110227 3L 21976295..21976461 113..279 835 100 Plus
3L 28110227 3L 21976582..21976724 276..418 715 100 Plus
3L 28110227 3L 21976784..21976895 417..528 560 100 Plus
3L 28110227 3L 21972147..21972242 17..112 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:30:41 has no hits.

BO10416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:57:49 Download gff for BO10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 1..2331 17..2348 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:02 Download gff for BO10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 147..2474 17..2346 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:18 Download gff for BO10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 146..2473 17..2346 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:57:49 Download gff for BO10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 147..2477 17..2348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:33 Download gff for BO10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 146..2473 17..2346 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:33 Download gff for BO10416.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21980917..21981195 1806..2084 100 -> Plus
3L 21977435..21977630 884..1079 100 -> Plus
3L 21978133..21978374 1080..1321 100 -> Plus
3L 21980304..21980561 1322..1579 100 -> Plus
3L 21980632..21980857 1580..1805 100 -> Plus
3L 21982134..21982393 2085..2346 99   Plus
3L 21976968..21977135 527..694 100 -> Plus
3L 21977193..21977381 695..883 100 -> Plus
3L 21972147..21972242 17..112 100 -> Plus
3L 21976295..21976459 113..277 100 -> Plus
3L 21976584..21976724 278..418 100 -> Plus
3L 21976786..21976893 419..526 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:18 Download gff for BO10416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21975234..21975493 2085..2346 99   Plus
arm_3L 21970068..21970235 527..694 100 -> Plus
arm_3L 21970293..21970481 695..883 100 -> Plus
arm_3L 21970535..21970730 884..1079 100 -> Plus
arm_3L 21965247..21965342 17..112 100 -> Plus
arm_3L 21969395..21969559 113..277 100 -> Plus
arm_3L 21969684..21969824 278..418 100 -> Plus
arm_3L 21969886..21969993 419..526 100 -> Plus
arm_3L 21971233..21971474 1080..1321 100 -> Plus
arm_3L 21973404..21973661 1322..1579 100 -> Plus
arm_3L 21973732..21973957 1580..1805 100 -> Plus
arm_3L 21974017..21974295 1806..2084 100 -> Plus

BO10416.pep Sequence

Translation from 16 to 2362

> BO10416.pep
MLQNSFKLAQSLRNGFYRNAWRAFSSHGPRQPLVSPERRLEKAHPTFTER
SQLKYARRLVVKLGSAVITREDNHGLALGRLASIVEQVAECHLEGREVMM
VTSGAVAFGKQKLAQELLMSLSMRETLNPKDSKEFDGATLEPRAAAAVGQ
SGLMSLYDAMFAQYGVKIAQVLVTKPDFYNEETRNNLFCTLSELISLNIV
PIINTNDAVSPPMFIRDDEPAGGARRGIPIKDNDSLSAMLAAEVQADLLI
LMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKKSKVGTGGMDSKVK
AATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANAVPVEV
MAENARTGSRQMQALTPAQRASAVNTLADLLVSREKFILDANAKDLAEAQ
KSGLAKPLLSRLSLNPAKLKNLSVGLKQIAEDSHKNVGRVLRRTRLADQL
ELKQVTVPIGVLLVIFESRPDSLPQVAALAMASANGLLLKGGKEAAHSNK
ALMELVKEALATVGAEHAVSLVSTREEISDLLSMENHIDLIIPRGSSDLV
RSIQQQSLHIPVLGHAEGVCHVYIDRDADLEKALRIARDAKCDYPAACNA
METLLIHEDLMSGAIFGDVCNMLKREGVKIYAGPRLNQQLTFGPPAAKSL
KHEYGALECCIEVVPSLDEAINHIHTYGSSHTDVIVTENDAAARQFLGSV
DSACVFHNASSRFADGFRFGLGAEVGISTARIHARGPVGVEGLLTTKWIL
EGQDHAAADFAEGGGRTWLHETLPLDASFLDH

BO10416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-PB 776 CG7470-PB 1..776 1..776 3924 100 Plus
CG7470-PA 776 CG7470-PA 1..776 1..776 3924 100 Plus