Clone Sequence Records
BO10417.3prime Sequence
863 bp (787 high quality bases) assembled on 2006-04-19
> BO10417.3prime
ATGGTCTAGAAAGCTTGCTTTGACGAAGAGGTCCTTGAGCGTGGCGCAGA
GCGAGGCGTCGCACGTGTCCTTGGAGTCGTCCTCGTCGGCCTTGCCGAAC
CAATTGAGCGTGGAGCGGACTGCCCGGCCGGCCTGCGATTGAGCAGAGCT
GCTGGCGGATGGTCGACTCCGCCGGGCGCCATGGGCGGGACTGCCGCTGG
CGCTGCCCGAATCCTTGCCCGCCTTGGGCGTGGCACCGCGAGACGCTGCC
GATGTGGAGGCACCGCCGCCGGACGACCCAGCTCCGGATCCGCCCATGCT
GGCGTTGGAGCTCTTTCGCAGGAAACCCTCGATGGCCGTGCCCAGAATGG
TGGCATCCACCGTCGCCTTGGTGGACTCCGCCCAGGTCTTCTGTTTGCTC
CTTGGCTTCAATTTCGGCTTGCCAGAGTCACCACCTAGCGGATCCTTCTT
CTGCAGCCGCTCCAGCACATCCTTGGACAGCGCCACCGCCGAACTCTTGC
TCCGCACGCTCTTCTTGCGCGCCAACGGCGTGTGCCGCTTGGCAAACCAA
CCGGACAGCGTGGCCGATCCATTGTCCTGGACATCGCTCACCAGCTGCTT
GGCGTTGTTCAGCAGGGACACATCGAAGCTATTGGATCGTGTCGACCTAC
CGGCATTGGGATCGAGTAGGCCGCCAGTGGTTCCAGATCCTCCACCGCCT
ACGCCACCTCCACCGCCCACCGCCAGTGAACCGCTGTGGGTTGTTGGTGT
GGGCGTGGCGCTGGTAGCACGCCCACGAGCGGCCGCCTGAAAGGTCTGGC
TGAGAAACGGGCTACTGGCCGTGGCCGTTGCCGAAGAACTAGCACTTGAG
CTGCCATCCCGGC
BO10417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-PA | 1845 | CG6123-RA | 998..1842 | 863..19 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 6236 | CG6123-RB | 1510..2354 | 863..19 | 4225 | 100 | Minus |
| CG6123-RA | 4949 | CG6123-RA | 1510..2354 | 863..19 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18327259..18328103 | 19..863 | 4225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:41:56 has no hits.
BO10417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:11 Download gff for
BO10417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 998..1845 | 18..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:52:58 Download gff for
BO10417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 998..1845 | 18..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:51:56 Download gff for
BO10417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 1407..2251 | 19..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:03 Download gff for
BO10417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 1510..2354 | 19..863 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:03 Download gff for
BO10417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18327259..18328103 | 19..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:51:56 Download gff for
BO10417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18221292..18222136 | 19..863 | 100 | | Plus |
BO10417.5prime Sequence
938 bp (862 high quality bases) assembled on 2006-04-19
> BO10417.5prime
GAAGTTATCAGTCGACATGGATGCGCTACGCTTCCGTGGTTCACCATTCG
CCCGCTTTACGGGCCAGTCGACCGGACCGGGCCATCCCCGTCCGCCGCCA
CACCCACAACATCCGCAACGCCCACAGGCGGCGGGAACACACGGCATCAG
TGCCCCGGAGCCGCTGATCGTTGTGGAGGAGTCCAATCTGCCGGAGGAGC
AGGAGGACAGCTCTGAGCCGACGGTCTCGAATCGCGGCAGCCTGGACATC
GACTCGCCCGTGAATCCGTATCTACTCTCGCCATGGCGGGATCCACGCGA
GGCCAGAAAGCATTCGCTGCCCTCGCAGCAGGTGACCGACGGCATCACGG
CCAGCCAGGTGCGCCGGCTCTCGGAGCGAGGCGGCGAGGGATCGGGGCCC
ACACCGAAGGAGGCCGCCTTTTTGGCCACTTTGTCGCAGGCTCCGGCGCC
GACCGGACGTCGCCACTCGGTGGTGACCATCTCGAAGGTGCCCACCACAC
TATTTGGACGCTCGCGTCGCGAATCCGTGGCCGCGTATCCCAACAGCAAT
GGGAGCAGTCGGGTGCTGAATTCCCGCCGGGAGAGCAACACAGGTCCCCC
ATCGACAGACCCCATCGGCAGCATTCACAATCTGCAGCTGGACATCATGG
ACGACATCTACTTGCAGTCGCGCAAGGCCCGCTTGAAGCTTTGGACATCC
TCCAACGAGAAGGTGTGCGAGGTGCAGACCGTCGACGAGGCCGGCTCCGG
CCAGCCGGGCCGACGATTCACCAACCGTCGCTACTCGGAATGCCCCCAGC
CAGGATTGGCCAGCTCCTTTCGCCGCGCCTCCGAGCTGCCCGCGTCGCAG
CAGCAGCAGCAGCAGGCTCAGTCGCAGAGCTCGACTCGGGCCTCAACGCG
TCGCAAGAAATCGGGCAGTGGAACTGGACTATTGGGCA
BO10417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-PA | 1845 | CG6123-RA | 1..922 | 17..938 | 4560 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 6236 | CG6123-RB | 513..1434 | 17..938 | 4580 | 99.8 | Plus |
| CG6123-RA | 4949 | CG6123-RA | 513..1434 | 17..938 | 4580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18328949..18329482 | 553..20 | 2670 | 100 | Minus |
| X | 23542271 | X | 18328179..18328565 | 938..552 | 1905 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:37:43 has no hits.
BO10417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:12 Download gff for
BO10417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:00 Download gff for
BO10417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:56 Download gff for
BO10417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..1330 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:24 Download gff for
BO10417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 513..1433 | 17..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:24 Download gff for
BO10417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18328180..18328564 | 553..937 | 99 | <- | Minus |
| X | 18328950..18329488 | 12..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:56 Download gff for
BO10417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18222213..18222597 | 553..937 | 99 | <- | Minus |
| arm_X | 18222983..18223521 | 12..552 | 99 | | Minus |
BO10417.complete Sequence
1876 bp assembled on 2007-11-02
GenBank Submission: FJ631743
> BO10417.complete
GAAGTTATCAGTCGACATGGATGCGCTACGCTTCCGTGGTTCACCATTCG
CCCGCTTTACGGGCCAGTCGACCGGACCGGGCCATCCCCGTCCGCCGCCA
CACCCACAACATCCGCAACGCCCACAGGCGGCGGGAACACACGGCATCAG
TGCCCCGGAGCCGCTGATCGTTGTGGAGGAGTCCAATCTGCCGGAGGAGC
AGGAGGACAGCTCTGAGCCGACGGTCTCGAATCGCGGCAGCCTGGACATC
GACTCGCCCGTGAATCCGTATCTACTCTCGCCATGGCGGGATCCACGCGA
GGCCAGAAAGCATTCGCTGCCCTCGCAGCAGGTGACCGACGGCATCACGG
CCAGCCAGGTGCGCCGGCTCTCGGAGCGAGGCGGCGAGGGATCGGGGCCC
ACACCGAAGGAGGCCGCCTTTTTGGCCACTTTGTCGCAGGCTCCGGCGCC
GACCGGACGTCGCCACTCGGTGGTGACCATCTCGAAGGTGCCCACCACAC
TATTTGGACGCTCGCGTCGCGAATCCGTGGCCGCGTATCCCAACAGCAAT
GGGAGCAGTCGGGTGCTGAATTCCCGCCGGGAGAGCAACACAGGTCCCCC
ATCGACAGACCCCATCGGCAGCATTCACAATCTGCAGCTGGACATCATGG
ACGACATCTACTTGCAGTCGCGCAAGGCCCGCTTGAAGCTTTGGACATCC
TCCAACGAGAAGGTGTGCGAGGTGCAGACCGTCGACGAGGCCGGCTCCGG
CCAGCCGGGCCGACGATTCACCAACCGTCGCTACTCGGAATGCCCCCAGC
CAGGATTGGCCAGCTCCTTTCGCCGCGCCTCCGAGCTGCCGCCGTCGCAG
CAGCAGCAGCAGCAGGCTCAGTCGCAGAGCTCGACTCGGGCCTCAACGCG
TCGCAAGAAATCGGGCAGTGGAACTGGACTATTGGGCAGTCGTACGGACA
TCGCCGGCATATTTAGCTCGTTGACCAGCTCGGCCATGGATATGCACCGG
CCGGAACCGGAAGGCCGGGATGGCAGCTCAAGTGCTAGTTCTTCGGCAAC
GGCCACGGCCAGTAGCCCGTTTCTCAGCCAGACCTTTCAGGCGGCCGCTC
GTGGGCGTGCTACCAGCGCCACGCCCACACCAACAACCCACAGCGGTTCA
CTGGCGGTGGGCGGTGGAGGTGGCGTAGGCGGTGGAGGATCTGGAACCAC
TGGCGGCCTACTCGATCCCAATGCCGGTAGGTCGACACGATCCAATAGCT
TCGATGTGTCCCTGCTGAACAACGCCAAGCAGCTGGTGAGCGATGTCCAG
GACAATGGATCGGCCACGCTGTCCGGTTGGTTTGCCAAGCGGCACACGCC
GTTGGCGCGCAAGAAGAGCGTGCGGAGCAAGAGTTCGGCGGTGGCGCTGT
CCAAGGATGTGCTGGAGCGGCTGCAGAAGAAGGATCCGCTAGGTGGTGAC
TCTGGCAAGCCGAAATTGAAGCCAAGGAGCAAACAGAAGACCTGGGCGGA
GTCCACCAAGGCGACGGTGGATGCCACCATTCTGGGCACGGCCATCGAGG
GTTTCCTGCGAAAGAGCTCCAACGCCAGCATGGGCGGATCCGGAGCTGGG
TCGTCCGGCGGCGGTGCCTCCACATCGGCAGCGTCTCGCGGTGCCACGCC
CAAGGCGGGCAAGGATTCGGGCAGCGCCAGCGGCAGTCCCGCCCATGGCG
CCCGGCGGAGTCGACCATCCGCCAGCAGCTCTGCTCAATCGCAGGCCGGC
CGGGCAGTCCGCTCCACGCTCAATTGGTTCGGCAAGGCCGACGAGGACGA
CTCCAAGGACACGTGCGACGCCTCGCTCTGCGCCACGCTCAAGGACCTCT
TCGTCAAAGCAAGCTTTCTAGACCAT
BO10417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 1845 | CG6123-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| CG6123-RA | 1845 | CG6123-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 6236 | CG6123-RB | 513..2354 | 17..1858 | 9210 | 100 | Plus |
| CG6123-RA | 4949 | CG6123-RA | 513..2354 | 17..1858 | 9210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18327259..18328565 | 1858..552 | 6535 | 100 | Minus |
| X | 23542271 | X | 18328949..18329482 | 553..20 | 2670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:12 has no hits.
BO10417.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:06 Download gff for
BO10417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 1..1845 | 17..1859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:33 Download gff for
BO10417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..2251 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:43 Download gff for
BO10417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..2251 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:05 Download gff for
BO10417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..2251 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:34 Download gff for
BO10417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 513..2354 | 17..1860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:34 Download gff for
BO10417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18327257..18328564 | 553..1860 | 99 | <- | Minus |
| X | 18328950..18329483 | 17..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:43 Download gff for
BO10417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18221290..18222597 | 553..1860 | 99 | <- | Minus |
| arm_X | 18222983..18223516 | 17..552 | 99 | | Minus |
BO10417.pep Sequence
Translation from 16 to 1876
> BO10417.pep
MDALRFRGSPFARFTGQSTGPGHPRPPPHPQHPQRPQAAGTHGISAPEPL
IVVEESNLPEEQEDSSEPTVSNRGSLDIDSPVNPYLLSPWRDPREARKHS
LPSQQVTDGITASQVRRLSERGGEGSGPTPKEAAFLATLSQAPAPTGRRH
SVVTISKVPTTLFGRSRRESVAAYPNSNGSSRVLNSRRESNTGPPSTDPI
GSIHNLQLDIMDDIYLQSRKARLKLWTSSNEKVCEVQTVDEAGSGQPGRR
FTNRRYSECPQPGLASSFRRASELPPSQQQQQQAQSQSSTRASTRRKKSG
SGTGLLGSRTDIAGIFSSLTSSAMDMHRPEPEGRDGSSSASSSATATASS
PFLSQTFQAAARGRATSATPTPTTHSGSLAVGGGGGVGGGGSGTTGGLLD
PNAGRSTRSNSFDVSLLNNAKQLVSDVQDNGSATLSGWFAKRHTPLARKK
SVRSKSSAVALSKDVLERLQKKDPLGGDSGKPKLKPRSKQKTWAESTKAT
VDATILGTAIEGFLRKSSNASMGGSGAGSSGGGASTSAASRGATPKAGKD
SGSASGSPAHGARRSRPSASSSAQSQAGRAVRSTLNWFGKADEDDSKDTC
DASLCATLKDLFVKASFLDH
BO10417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-PB | 614 | CG6123-PB | 1..614 | 1..614 | 3135 | 100 | Plus |
| CG6123-PA | 614 | CG6123-PA | 1..614 | 1..614 | 3135 | 100 | Plus |
| CG32700-PB | 218 | CG32700-PB | 12..215 | 44..247 | 458 | 53.7 | Plus |
| CG32700-PA | 218 | CG32700-PA | 12..215 | 44..247 | 458 | 53.7 | Plus |
