Clone BO10420 Report

Search the DGRC for BO10420

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCtBP-RB
Protein status:BO10420.pep: validated full length
Sequenced Size:1192

Clone Sequence Records

BO10420.3prime Sequence

901 bp (810 high quality bases) assembled on 2006-04-19

> BO10420.3prime
ATGGTCTAGAAAGCTTGCCTTTTCTTGATTTGATATCATTTGTAGTTTAC
CTTCGGGATAAACAGCCGCCGCCACGCCCCCGGCGGCAGCGGCAGGCGGC
GTGCGCATGAAGTACTCCTTGTTGACGCAATTCCTCAGCACGTCTGGAAT
ATTGCCGACGATCGCCCGCCGGATCTCGGTGGCTGCCATTTCGCGCAGCT
CCGTTGCGGACGCGTCGCTGAAGAAGGCGGCGTGCGGTGTGCAAATCAGA
TTTGGGGCATCCTTCAGTGCGCCTTGAAATACATTGTAAGGTTCGTTTTC
GTGAACGTCCAGGGCGGCAGCTCTTATCCTTCCCTGCTTCAGCGCCAACG
CCAGGGTCTCGTCATCGACCAGACCGCCGCGTGCGGTGTTCACCAGAAAT
GCACCAGGTCGCATCTGTTTAATTGTGAATTCATTGATTAAATGATGGTT
GTGCTCGTTGAGCGTGCAATGCAGTGAGACGCAATCGGACTGGAAAAGCA
GGTCCTGCAGCGTGTAGACGCGAGTTAGGCCCAGCGACTTGTCGATGCCA
TCGGGCAGGTAGGGATCGTAGAAGATGACGTTGAAGCCGAACGCCTTAGC
CCGCAGGGCCACGGCGCTACCAATGCGGCCCAGTCCCACCAGACCCAAGG
TGTCGCCGCGGATGCGTGCACAGCCATGCGCAGCCTCCCGCACTTGCTCG
GGTCCGGTGAACTTCTTGCCCTCGCGCACCATGTTCGCTAGCCAGTATGT
CCGCCGGTAGAGGTTGAGGATGAGGCACATCGTCGTGTCCGCCACCTCCT
CGACTCCGTAGCCGGGGACGTTGCACACGGCGATGCCCAGTTCGCCCGCC
GCCTTTACATCAATGTTGTCTGTGCCGCTGCCGATGCGCACGATAATGCG
T

BO10420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7583-PC 1161 CtBP-RC 276..1158 901..19 4390 99.8 Minus
CG7583-PD 1161 CtBP-RD 276..1158 901..19 4390 99.8 Minus
CG7583-PB 1161 CtBP-RB 276..1158 901..19 4390 99.8 Minus
CG7583-PA 1161 CtBP-RA 276..1158 901..19 4390 99.8 Minus
CG7583-PE 1431 CtBP-RE 276..1127 901..50 4235 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 3959 CG7583-RA 654..1536 901..19 4400 99.9 Minus
CtBP-RB 1719 CG7583-RB 794..1676 901..19 4400 99.9 Minus
CtBP-RD 3946 CG7583-RD 641..1523 901..19 4400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13020849..13021114 680..415 1315 99.6 Minus
3R 32079331 3R 13021420..13021674 273..19 1275 100 Minus
3R 32079331 3R 13019976..13020202 901..675 1120 99.6 Minus
3R 32079331 3R 13021172..13021317 418..273 730 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:17:17 has no hits.

BO10420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:17 Download gff for BO10420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 276..1161 18..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:06 Download gff for BO10420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 276..1161 18..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:52 Download gff for BO10420.3prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 641..1523 19..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:45:39 Download gff for BO10420.3prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 641..1523 19..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:45:39 Download gff for BO10420.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13019976..13020201 676..901 99 -> Minus
3R 13020854..13021114 415..675 100 -> Minus
3R 13021176..13021316 274..414 100 -> Minus
3R 13021420..13021674 19..273 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:52 Download gff for BO10420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8845698..8845923 676..901 99 -> Minus
arm_3R 8846576..8846836 415..675 100 -> Minus
arm_3R 8846898..8847038 274..414 100 -> Minus
arm_3R 8847142..8847396 19..273 100   Minus

BO10420.5prime Sequence

854 bp (830 high quality bases) assembled on 2006-04-19

> BO10420.5prime
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGA

BO10420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7583-PC 1161 CtBP-RC 1..838 17..854 4190 100 Plus
CG7583-PD 1161 CtBP-RD 1..838 17..854 4190 100 Plus
CG7583-PE 1431 CtBP-RE 1..838 17..854 4190 100 Plus
CG7583-PB 1161 CtBP-RB 1..838 17..854 4190 100 Plus
CG7583-PA 1161 CtBP-RA 1..838 17..854 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RJ 2612 CG7583-RJ 375..1216 13..854 4195 99.9 Plus
CtBP-RI 2382 CG7583-RI 375..1216 13..854 4195 99.9 Plus
CtBP-RH 2627 CG7583-RH 375..1216 13..854 4195 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13019894..13020202 210..518 1545 100 Plus
3R 32079331 3R 13020849..13021114 513..778 1315 99.6 Plus
3R 32079331 3R 13019616..13019816 13..213 990 99.5 Plus
3R 32079331 3R 13021172..13021251 775..854 400 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:16:19 has no hits.

BO10420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:18 Download gff for BO10420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:07 Download gff for BO10420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:51 Download gff for BO10420.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RH 372..1215 9..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:09 Download gff for BO10420.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RH 372..1215 9..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:09 Download gff for BO10420.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13019616..13019814 11..211 98 -> Plus
3R 13019896..13020201 212..517 100 -> Plus
3R 13020854..13021114 518..778 100 -> Plus
3R 13021176..13021250 779..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:51 Download gff for BO10420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8846576..8846836 518..778 100 -> Plus
arm_3R 8846898..8846972 779..853 100   Plus
arm_3R 8845338..8845536 11..211 98 -> Plus
arm_3R 8845618..8845923 212..517 100 -> Plus

BO10420.complete Sequence

1192 bp (1192 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631745

> BO10420.complete
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGAAGCAGGGAAGGATAAGAGCTGCCGCCCTGGACGTTCACGAAAACGA
ACCTTACAATGTATTTCAAGGCGCACTGAAGGATGCCCCAAATCTGATTT
GCACACCGCACGCCGCCTTCTTCAGCGACGCGTCCGCAACGGAGCTGCGC
GAAATGGCAGCCACCGAGATCCGGCGGGCGATCGTCGGCAATATTCCAGA
CGTGCTGAGGAATTGCGTCAACAAGGAGTACTTCATGCGCACGCCGCCTG
CCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTA
CAAATGATATCAAATCAAGAAAAGGCAAGCTTTCTAGACCAT

BO10420.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 1161 CG7583-PA 1..1158 17..1174 5790 100 Plus
CtBP-RB 1161 CG7583-PB 1..1158 17..1174 5790 100 Plus
CtBP-RD 1161 CG7583-PD 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 3959 CG7583-RA 375..1536 13..1174 5795 99.9 Plus
CtBP-RB 1719 CG7583-RB 515..1676 13..1174 5795 99.9 Plus
CtBP-RD 3946 CG7583-RD 362..1523 13..1174 5795 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13019894..13020202 210..518 1545 100 Plus
3R 32079331 3R 13020849..13021114 513..778 1315 99.6 Plus
3R 32079331 3R 13021420..13021674 920..1174 1275 100 Plus
3R 32079331 3R 13019616..13019816 13..213 990 99.5 Plus
3R 32079331 3R 13021172..13021317 775..920 730 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:41:06 has no hits.

BO10420.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:55 Download gff for BO10420.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RB 1..1161 17..1175 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:32 Download gff for BO10420.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RB 512..1676 9..1174 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:55 Download gff for BO10420.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 366..1523 17..1176 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:56 Download gff for BO10420.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RB 512..1676 9..1174 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:19 Download gff for BO10420.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 366..1523 17..1176 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:19 Download gff for BO10420.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13021420..13021674 920..1176 99   Plus
3R 13020854..13021114 518..778 100 -> Plus
3R 13021176..13021316 779..919 100 -> Plus
3R 13019620..13019814 17..211 100 -> Plus
3R 13019896..13020201 212..517 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:55 Download gff for BO10420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8845342..8845536 17..211 100 -> Plus
arm_3R 8845618..8845923 212..517 100 -> Plus
arm_3R 8846576..8846836 518..778 100 -> Plus
arm_3R 8846898..8847038 779..919 100 -> Plus
arm_3R 8847142..8847396 920..1176 99   Plus

BO10420.pep Sequence

Translation from 16 to 1192

> BO10420.pep
MDKNLMMPKRSRIDVKGNFANGPLQARPLVALLDGRDCSIEMPILKDVAT
VAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGS
GTDNIDVKAAGELGIAVCNVPGYGVEEVADTTMCLILNLYRRTYWLANMV
REGKKFTGPEQVREAAHGCARIRGDTLGLVGLGRIGSAVALRAKAFGFNV
IFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF
TIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNVF
QGALKDAPNLICTPHAAFFSDASATELREMAATEIRRAIVGNIPDVLRNC
VNKEYFMRTPPAAAAGGVAAAVYPEGKLQMISNQEKASFLDH

BO10420.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-PA 386 CG7583-PA 1..386 1..386 1993 100 Plus
CtBP-PB 386 CG7583-PB 1..386 1..386 1993 100 Plus
CtBP-PD 386 CG7583-PD 1..386 1..386 1993 100 Plus
CtBP-PC 386 CG7583-PC 1..386 1..386 1993 100 Plus
CtBP-PF 383 CG7583-PF 1..383 1..386 1964 99.2 Plus