Clone Sequence Records
BO10420.3prime Sequence
901 bp (810 high quality bases) assembled on 2006-04-19
> BO10420.3prime
ATGGTCTAGAAAGCTTGCCTTTTCTTGATTTGATATCATTTGTAGTTTAC
CTTCGGGATAAACAGCCGCCGCCACGCCCCCGGCGGCAGCGGCAGGCGGC
GTGCGCATGAAGTACTCCTTGTTGACGCAATTCCTCAGCACGTCTGGAAT
ATTGCCGACGATCGCCCGCCGGATCTCGGTGGCTGCCATTTCGCGCAGCT
CCGTTGCGGACGCGTCGCTGAAGAAGGCGGCGTGCGGTGTGCAAATCAGA
TTTGGGGCATCCTTCAGTGCGCCTTGAAATACATTGTAAGGTTCGTTTTC
GTGAACGTCCAGGGCGGCAGCTCTTATCCTTCCCTGCTTCAGCGCCAACG
CCAGGGTCTCGTCATCGACCAGACCGCCGCGTGCGGTGTTCACCAGAAAT
GCACCAGGTCGCATCTGTTTAATTGTGAATTCATTGATTAAATGATGGTT
GTGCTCGTTGAGCGTGCAATGCAGTGAGACGCAATCGGACTGGAAAAGCA
GGTCCTGCAGCGTGTAGACGCGAGTTAGGCCCAGCGACTTGTCGATGCCA
TCGGGCAGGTAGGGATCGTAGAAGATGACGTTGAAGCCGAACGCCTTAGC
CCGCAGGGCCACGGCGCTACCAATGCGGCCCAGTCCCACCAGACCCAAGG
TGTCGCCGCGGATGCGTGCACAGCCATGCGCAGCCTCCCGCACTTGCTCG
GGTCCGGTGAACTTCTTGCCCTCGCGCACCATGTTCGCTAGCCAGTATGT
CCGCCGGTAGAGGTTGAGGATGAGGCACATCGTCGTGTCCGCCACCTCCT
CGACTCCGTAGCCGGGGACGTTGCACACGGCGATGCCCAGTTCGCCCGCC
GCCTTTACATCAATGTTGTCTGTGCCGCTGCCGATGCGCACGATAATGCG
T
BO10420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7583-PC | 1161 | CtBP-RC | 276..1158 | 901..19 | 4390 | 99.8 | Minus |
CG7583-PD | 1161 | CtBP-RD | 276..1158 | 901..19 | 4390 | 99.8 | Minus |
CG7583-PB | 1161 | CtBP-RB | 276..1158 | 901..19 | 4390 | 99.8 | Minus |
CG7583-PA | 1161 | CtBP-RA | 276..1158 | 901..19 | 4390 | 99.8 | Minus |
CG7583-PE | 1431 | CtBP-RE | 276..1127 | 901..50 | 4235 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 3959 | CG7583-RA | 654..1536 | 901..19 | 4400 | 99.9 | Minus |
CtBP-RB | 1719 | CG7583-RB | 794..1676 | 901..19 | 4400 | 99.9 | Minus |
CtBP-RD | 3946 | CG7583-RD | 641..1523 | 901..19 | 4400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13020849..13021114 | 680..415 | 1315 | 99.6 | Minus |
3R | 32079331 | 3R | 13021420..13021674 | 273..19 | 1275 | 100 | Minus |
3R | 32079331 | 3R | 13019976..13020202 | 901..675 | 1120 | 99.6 | Minus |
3R | 32079331 | 3R | 13021172..13021317 | 418..273 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:17:17 has no hits.
BO10420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:17 Download gff for
BO10420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 276..1161 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:06 Download gff for
BO10420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 276..1161 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:52 Download gff for
BO10420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 641..1523 | 19..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:45:39 Download gff for
BO10420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 641..1523 | 19..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:45:39 Download gff for
BO10420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13019976..13020201 | 676..901 | 99 | -> | Minus |
3R | 13020854..13021114 | 415..675 | 100 | -> | Minus |
3R | 13021176..13021316 | 274..414 | 100 | -> | Minus |
3R | 13021420..13021674 | 19..273 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:52 Download gff for
BO10420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8845698..8845923 | 676..901 | 99 | -> | Minus |
arm_3R | 8846576..8846836 | 415..675 | 100 | -> | Minus |
arm_3R | 8846898..8847038 | 274..414 | 100 | -> | Minus |
arm_3R | 8847142..8847396 | 19..273 | 100 | | Minus |
BO10420.5prime Sequence
854 bp (830 high quality bases) assembled on 2006-04-19
> BO10420.5prime
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGA
BO10420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7583-PC | 1161 | CtBP-RC | 1..838 | 17..854 | 4190 | 100 | Plus |
CG7583-PD | 1161 | CtBP-RD | 1..838 | 17..854 | 4190 | 100 | Plus |
CG7583-PE | 1431 | CtBP-RE | 1..838 | 17..854 | 4190 | 100 | Plus |
CG7583-PB | 1161 | CtBP-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
CG7583-PA | 1161 | CtBP-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RJ | 2612 | CG7583-RJ | 375..1216 | 13..854 | 4195 | 99.9 | Plus |
CtBP-RI | 2382 | CG7583-RI | 375..1216 | 13..854 | 4195 | 99.9 | Plus |
CtBP-RH | 2627 | CG7583-RH | 375..1216 | 13..854 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13019894..13020202 | 210..518 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 13020849..13021114 | 513..778 | 1315 | 99.6 | Plus |
3R | 32079331 | 3R | 13019616..13019816 | 13..213 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 13021172..13021251 | 775..854 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:16:19 has no hits.
BO10420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:18 Download gff for
BO10420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:07 Download gff for
BO10420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:51 Download gff for
BO10420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RH | 372..1215 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:09 Download gff for
BO10420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RH | 372..1215 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:09 Download gff for
BO10420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13019616..13019814 | 11..211 | 98 | -> | Plus |
3R | 13019896..13020201 | 212..517 | 100 | -> | Plus |
3R | 13020854..13021114 | 518..778 | 100 | -> | Plus |
3R | 13021176..13021250 | 779..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:51 Download gff for
BO10420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8846576..8846836 | 518..778 | 100 | -> | Plus |
arm_3R | 8846898..8846972 | 779..853 | 100 | | Plus |
arm_3R | 8845338..8845536 | 11..211 | 98 | -> | Plus |
arm_3R | 8845618..8845923 | 212..517 | 100 | -> | Plus |
BO10420.complete Sequence
1192 bp (1192 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631745
> BO10420.complete
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGAAGCAGGGAAGGATAAGAGCTGCCGCCCTGGACGTTCACGAAAACGA
ACCTTACAATGTATTTCAAGGCGCACTGAAGGATGCCCCAAATCTGATTT
GCACACCGCACGCCGCCTTCTTCAGCGACGCGTCCGCAACGGAGCTGCGC
GAAATGGCAGCCACCGAGATCCGGCGGGCGATCGTCGGCAATATTCCAGA
CGTGCTGAGGAATTGCGTCAACAAGGAGTACTTCATGCGCACGCCGCCTG
CCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTA
CAAATGATATCAAATCAAGAAAAGGCAAGCTTTCTAGACCAT
BO10420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 1161 | CG7583-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
CtBP-RB | 1161 | CG7583-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
CtBP-RD | 1161 | CG7583-PD | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 3959 | CG7583-RA | 375..1536 | 13..1174 | 5795 | 99.9 | Plus |
CtBP-RB | 1719 | CG7583-RB | 515..1676 | 13..1174 | 5795 | 99.9 | Plus |
CtBP-RD | 3946 | CG7583-RD | 362..1523 | 13..1174 | 5795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13019894..13020202 | 210..518 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 13020849..13021114 | 513..778 | 1315 | 99.6 | Plus |
3R | 32079331 | 3R | 13021420..13021674 | 920..1174 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 13019616..13019816 | 13..213 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 13021172..13021317 | 775..920 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:41:06 has no hits.
BO10420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:55 Download gff for
BO10420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RB | 1..1161 | 17..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:32 Download gff for
BO10420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RB | 512..1676 | 9..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:55 Download gff for
BO10420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 366..1523 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:56 Download gff for
BO10420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RB | 512..1676 | 9..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:19 Download gff for
BO10420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 366..1523 | 17..1176 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:19 Download gff for
BO10420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13021420..13021674 | 920..1176 | 99 | | Plus |
3R | 13020854..13021114 | 518..778 | 100 | -> | Plus |
3R | 13021176..13021316 | 779..919 | 100 | -> | Plus |
3R | 13019620..13019814 | 17..211 | 100 | -> | Plus |
3R | 13019896..13020201 | 212..517 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:55 Download gff for
BO10420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8845342..8845536 | 17..211 | 100 | -> | Plus |
arm_3R | 8845618..8845923 | 212..517 | 100 | -> | Plus |
arm_3R | 8846576..8846836 | 518..778 | 100 | -> | Plus |
arm_3R | 8846898..8847038 | 779..919 | 100 | -> | Plus |
arm_3R | 8847142..8847396 | 920..1176 | 99 | | Plus |
BO10420.pep Sequence
Translation from 16 to 1192
> BO10420.pep
MDKNLMMPKRSRIDVKGNFANGPLQARPLVALLDGRDCSIEMPILKDVAT
VAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGS
GTDNIDVKAAGELGIAVCNVPGYGVEEVADTTMCLILNLYRRTYWLANMV
REGKKFTGPEQVREAAHGCARIRGDTLGLVGLGRIGSAVALRAKAFGFNV
IFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF
TIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNVF
QGALKDAPNLICTPHAAFFSDASATELREMAATEIRRAIVGNIPDVLRNC
VNKEYFMRTPPAAAAGGVAAAVYPEGKLQMISNQEKASFLDH
BO10420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-PA | 386 | CG7583-PA | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PB | 386 | CG7583-PB | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PD | 386 | CG7583-PD | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PC | 386 | CG7583-PC | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PF | 383 | CG7583-PF | 1..383 | 1..386 | 1964 | 99.2 | Plus |