Clone Sequence Records
BO10421.3prime Sequence
881 bp (837 high quality bases) assembled on 2006-04-19
> BO10421.3prime
ATGGTCTAGAAAGCTTGCGGAGCCGGGCCCCTTTGTCGCCTGATTGCTCC
GATTGTGCTGGTCGATGTTGTAGTGATAGAAGAATGACTTGCCGTACTCG
AAGGACGAAATCATTATCGCACATGCGGGCGCTACCTTGAAGAGTCGGGG
CCCCAGTCCAGAGAAAATGGCGGGCACACCGCCCATGCGGTAAATGCTGG
CCAGGCGCATCGCCACCGACTTGGTGGCCACTTGCTTGGGTGGATTATCT
GAGAATATGAACTTCTCGCCGAATTCGATCTGCTCGTGCGTTTTCACCAC
ATCGAAGGGCGTGGTGATGGTGGCGGCCACCGATCCGGATATCGCTCCCG
CCGCAAAGCTGAAGCTAAACGTTGGCTCCACAACGCCAAAGGAGCTCTTG
AGGTACTCGTAGCAGGTCCAGTAGATGCCGGAGAAGGGCACGTCGCGCAG
GATGGTTGGCGGCAGACCGCGCCACAAGCCCAGCACGCCCTGCGACTGCA
CCACTTGGCGAATGGTGCCAAACATCTCGGCGTGCGTCATGCGCTGCGAT
TGCATCTTGGTGCGGATTAGCTCGACGGGACTTACACAGGTTACGGCCAG
AATGCGGCCCGACACGCCGGCCAGCAGCGGCACCAGAAATGGAATCGGGT
GTGGAATGTCGTGGGCAATGGTATCCGGGCGTCGCGTGTATTTGTAGTGG
ATATCGGTGAAACGGGCCTTGAACTGCTCATAAGCCACGAAGTATATGAT
GGTCGAGGGCAGGGCCGAGATTAGCGTTGGGCTGAGCCCCGACCACAGGG
AGCCGATGCCCTCAGTGCGGCTGATTTTGATGAATGCGTCAATGGTGCCA
GAAAAACGGGGAGCGGGCTTGGCGGCTGCTG
BO10421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14209-PB | 1164 | Shawn-RB | 299..1161 | 881..19 | 4315 | 100 | Minus |
CG14209-PC | 1164 | Shawn-RC | 299..1161 | 881..19 | 4315 | 100 | Minus |
CG14209-PD | 1164 | Shawn-RD | 299..1161 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 3255 | CG14209-RE | 2189..3051 | 881..19 | 4315 | 100 | Minus |
Shawn-RD | 1618 | CG14209-RD | 552..1414 | 881..19 | 4315 | 100 | Minus |
Shawn-RC | 3032 | CG14209-RC | 1987..2849 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19614442..19614953 | 840..329 | 2560 | 100 | Minus |
X | 23542271 | X | 19615181..19615413 | 251..19 | 1165 | 100 | Minus |
X | 23542271 | X | 19615023..19615105 | 331..249 | 415 | 100 | Minus |
X | 23542271 | X | 19614342..19614383 | 881..840 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:57:13 has no hits.
BO10421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:19 Download gff for
BO10421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-PC | 299..1164 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:08 Download gff for
BO10421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14209-PD | 299..1164 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:38:33 Download gff for
BO10421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1898..2764 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:15 Download gff for
BO10421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RC | 1987..2853 | 15..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:15 Download gff for
BO10421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19614342..19614382 | 841..881 | 100 | -> | Minus |
X | 19614442..19614951 | 331..840 | 100 | -> | Minus |
X | 19615024..19615105 | 249..330 | 100 | -> | Minus |
X | 19615184..19615417 | 15..248 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:38:33 Download gff for
BO10421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19508375..19508415 | 841..881 | 100 | -> | Minus |
arm_X | 19508475..19508984 | 331..840 | 100 | -> | Minus |
arm_X | 19509057..19509138 | 249..330 | 100 | -> | Minus |
arm_X | 19509217..19509450 | 15..248 | 99 | | Minus |
BO10421.5prime Sequence
923 bp (805 high quality bases) assembled on 2006-04-19
> BO10421.5prime
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGTGGCCGCCACCATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAAT
BO10421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14209-PB | 1164 | Shawn-RB | 1..907 | 17..923 | 4535 | 100 | Plus |
CG14209-PC | 1164 | Shawn-RC | 1..907 | 17..923 | 4535 | 100 | Plus |
CG14209-PD | 1164 | Shawn-RD | 1..907 | 17..923 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 3255 | CG14209-RE | 1890..2797 | 16..923 | 4540 | 100 | Plus |
Shawn-RD | 1618 | CG14209-RD | 253..1160 | 16..923 | 4540 | 100 | Plus |
Shawn-RC | 3032 | CG14209-RC | 1688..2595 | 16..923 | 4540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19614442..19614953 | 356..867 | 2560 | 100 | Plus |
X | 23542271 | X | 19614213..19614383 | 186..356 | 855 | 100 | Plus |
X | 23542271 | X | 19613974..19614143 | 16..185 | 850 | 100 | Plus |
X | 23542271 | X | 19615023..19615081 | 865..923 | 295 | 100 | Plus |
3R | 32079331 | 3R | 7722807..7722912 | 124..229 | 215 | 80.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:36:01 has no hits.
BO10421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:20 Download gff for
BO10421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-PC | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:10 Download gff for
BO10421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14209-PD | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:33 Download gff for
BO10421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1592..2506 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:03 Download gff for
BO10421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RC | 1681..2595 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:03 Download gff for
BO10421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19613970..19614143 | 11..185 | 98 | -> | Plus |
X | 19614213..19614382 | 186..355 | 100 | -> | Plus |
X | 19614442..19614951 | 356..865 | 100 | -> | Plus |
X | 19615024..19615081 | 866..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:33 Download gff for
BO10421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19508003..19508176 | 11..185 | 98 | -> | Plus |
arm_X | 19508246..19508415 | 186..355 | 100 | -> | Plus |
arm_X | 19508475..19508984 | 356..865 | 100 | -> | Plus |
arm_X | 19509057..19509114 | 866..923 | 100 | | Plus |
BO10421.complete Sequence
1195 bp (1195 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631746
> BO10421.complete
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGTGGCCGCCACCATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAATTCGGCGAGAAGTTCATATTCTCAGATA
ATCCACCCAAGCAAGTGGCCACCAAGTCGGTGGCGATGCGCCTGGCCAGC
ATTTACCGCATGGGCGGTGTGCCCGCCATTTTCTCTGGACTGGGGCCCCG
ACTCTTCAAGGTAGCGCCCGCATGTGCGATAATGATTTCGTCCTTCGAGT
ACGGCAAGTCATTCTTCTATCACTACAACATCGACCAGCACAATCGGAGC
AATCAGGCGACAAAGGGGCCCGGCTCCGCAAGCTTTCTAGACCAT
BO10421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 1164 | CG14209-PE | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Shawn-RD | 1164 | CG14209-PD | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Shawn-RC | 1164 | CG14209-PC | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 3255 | CG14209-RE | 1890..3051 | 16..1177 | 5810 | 100 | Plus |
Shawn-RD | 1618 | CG14209-RD | 253..1414 | 16..1177 | 5810 | 100 | Plus |
Shawn-RC | 3032 | CG14209-RC | 1688..2849 | 16..1177 | 5810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19614442..19614953 | 356..867 | 2560 | 100 | Plus |
X | 23542271 | X | 19615181..19615413 | 945..1177 | 1165 | 100 | Plus |
X | 23542271 | X | 19614213..19614383 | 186..356 | 855 | 100 | Plus |
X | 23542271 | X | 19613974..19614143 | 16..185 | 850 | 100 | Plus |
X | 23542271 | X | 19615023..19615105 | 865..947 | 415 | 100 | Plus |
3R | 32079331 | 3R | 7722807..7722912 | 124..229 | 215 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:13:13 has no hits.
BO10421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:57 Download gff for
BO10421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RD | 1..1164 | 17..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:34 Download gff for
BO10421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1592..2764 | 9..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:12 Download gff for
BO10421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1600..2760 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:57 Download gff for
BO10421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1592..2764 | 9..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:07 Download gff for
BO10421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RC | 1689..2849 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:07 Download gff for
BO10421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19614213..19614382 | 186..355 | 100 | -> | Plus |
X | 19613975..19614143 | 17..185 | 100 | -> | Plus |
X | 19614442..19614951 | 356..865 | 100 | -> | Plus |
X | 19615024..19615105 | 866..947 | 100 | -> | Plus |
X | 19615184..19615413 | 948..1179 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:12 Download gff for
BO10421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19508008..19508176 | 17..185 | 100 | -> | Plus |
arm_X | 19508246..19508415 | 186..355 | 100 | -> | Plus |
arm_X | 19508475..19508984 | 356..865 | 100 | -> | Plus |
arm_X | 19509057..19509138 | 866..947 | 100 | -> | Plus |
arm_X | 19509217..19509446 | 948..1179 | 99 | | Plus |
BO10421.pep Sequence
Translation from 16 to 1195
> BO10421.pep
MATREACGQFAAASAAMAAASSQNPSKATMTDPRFRIRPLQQVASACTGA
MVTACFMTPLDVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNP
AAAKPAPRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAY
EQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVS
PVELIRTKMQSQRMTHAEMFGTIRQVVQSQGVLGLWRGLPPTILRDVPFS
GIYWTCYEYLKSSFGVVEPTFSFSFAAGAISGSVAATITTPFDVVKTHEQ
IEFGEKFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSGLGPRLFKVA
PACAIMISSFEYGKSFFYHYNIDQHNRSNQATKGPGSASFLDH
BO10421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-PE | 387 | CG14209-PE | 1..387 | 1..387 | 2021 | 100 | Plus |
Shawn-PD | 387 | CG14209-PD | 1..387 | 1..387 | 2021 | 100 | Plus |
Shawn-PC | 387 | CG14209-PC | 1..387 | 1..387 | 2021 | 100 | Plus |
Shawn-PB | 387 | CG14209-PB | 1..387 | 1..387 | 2021 | 100 | Plus |
CG2616-PB | 449 | CG2616-PB | 73..432 | 22..378 | 1122 | 60.2 | Plus |