Clone BO10421 Report

Search the DGRC for BO10421

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:104
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptShawn-RB
Protein status:BO10421.pep: validated full length
Sequenced Size:1195

Clone Sequence Records

BO10421.3prime Sequence

881 bp (837 high quality bases) assembled on 2006-04-19

> BO10421.3prime
ATGGTCTAGAAAGCTTGCGGAGCCGGGCCCCTTTGTCGCCTGATTGCTCC
GATTGTGCTGGTCGATGTTGTAGTGATAGAAGAATGACTTGCCGTACTCG
AAGGACGAAATCATTATCGCACATGCGGGCGCTACCTTGAAGAGTCGGGG
CCCCAGTCCAGAGAAAATGGCGGGCACACCGCCCATGCGGTAAATGCTGG
CCAGGCGCATCGCCACCGACTTGGTGGCCACTTGCTTGGGTGGATTATCT
GAGAATATGAACTTCTCGCCGAATTCGATCTGCTCGTGCGTTTTCACCAC
ATCGAAGGGCGTGGTGATGGTGGCGGCCACCGATCCGGATATCGCTCCCG
CCGCAAAGCTGAAGCTAAACGTTGGCTCCACAACGCCAAAGGAGCTCTTG
AGGTACTCGTAGCAGGTCCAGTAGATGCCGGAGAAGGGCACGTCGCGCAG
GATGGTTGGCGGCAGACCGCGCCACAAGCCCAGCACGCCCTGCGACTGCA
CCACTTGGCGAATGGTGCCAAACATCTCGGCGTGCGTCATGCGCTGCGAT
TGCATCTTGGTGCGGATTAGCTCGACGGGACTTACACAGGTTACGGCCAG
AATGCGGCCCGACACGCCGGCCAGCAGCGGCACCAGAAATGGAATCGGGT
GTGGAATGTCGTGGGCAATGGTATCCGGGCGTCGCGTGTATTTGTAGTGG
ATATCGGTGAAACGGGCCTTGAACTGCTCATAAGCCACGAAGTATATGAT
GGTCGAGGGCAGGGCCGAGATTAGCGTTGGGCTGAGCCCCGACCACAGGG
AGCCGATGCCCTCAGTGCGGCTGATTTTGATGAATGCGTCAATGGTGCCA
GAAAAACGGGGAGCGGGCTTGGCGGCTGCTG

BO10421.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14209-PB 1164 Shawn-RB 299..1161 881..19 4315 100 Minus
CG14209-PC 1164 Shawn-RC 299..1161 881..19 4315 100 Minus
CG14209-PD 1164 Shawn-RD 299..1161 881..19 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 3255 CG14209-RE 2189..3051 881..19 4315 100 Minus
Shawn-RD 1618 CG14209-RD 552..1414 881..19 4315 100 Minus
Shawn-RC 3032 CG14209-RC 1987..2849 881..19 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19614442..19614953 840..329 2560 100 Minus
X 23542271 X 19615181..19615413 251..19 1165 100 Minus
X 23542271 X 19615023..19615105 331..249 415 100 Minus
X 23542271 X 19614342..19614383 881..840 210 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:57:13 has no hits.

BO10421.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:19 Download gff for BO10421.3prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-PC 299..1164 16..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:08 Download gff for BO10421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14209-PD 299..1164 16..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:38:33 Download gff for BO10421.3prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1898..2764 15..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:15 Download gff for BO10421.3prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RC 1987..2853 15..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:15 Download gff for BO10421.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19614342..19614382 841..881 100 -> Minus
X 19614442..19614951 331..840 100 -> Minus
X 19615024..19615105 249..330 100 -> Minus
X 19615184..19615417 15..248 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:38:33 Download gff for BO10421.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19508375..19508415 841..881 100 -> Minus
arm_X 19508475..19508984 331..840 100 -> Minus
arm_X 19509057..19509138 249..330 100 -> Minus
arm_X 19509217..19509450 15..248 99   Minus

BO10421.5prime Sequence

923 bp (805 high quality bases) assembled on 2006-04-19

> BO10421.5prime
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGTGGCCGCCACCATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAAT

BO10421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14209-PB 1164 Shawn-RB 1..907 17..923 4535 100 Plus
CG14209-PC 1164 Shawn-RC 1..907 17..923 4535 100 Plus
CG14209-PD 1164 Shawn-RD 1..907 17..923 4535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 3255 CG14209-RE 1890..2797 16..923 4540 100 Plus
Shawn-RD 1618 CG14209-RD 253..1160 16..923 4540 100 Plus
Shawn-RC 3032 CG14209-RC 1688..2595 16..923 4540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19614442..19614953 356..867 2560 100 Plus
X 23542271 X 19614213..19614383 186..356 855 100 Plus
X 23542271 X 19613974..19614143 16..185 850 100 Plus
X 23542271 X 19615023..19615081 865..923 295 100 Plus
3R 32079331 3R 7722807..7722912 124..229 215 80.2 Plus
Blast to na_te.dros performed on 2015-02-13 00:36:01 has no hits.

BO10421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:20 Download gff for BO10421.5prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-PC 1..907 17..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:10 Download gff for BO10421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14209-PD 1..907 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:33 Download gff for BO10421.5prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1592..2506 9..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:03 Download gff for BO10421.5prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RC 1681..2595 9..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:03 Download gff for BO10421.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19613970..19614143 11..185 98 -> Plus
X 19614213..19614382 186..355 100 -> Plus
X 19614442..19614951 356..865 100 -> Plus
X 19615024..19615081 866..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:33 Download gff for BO10421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19508003..19508176 11..185 98 -> Plus
arm_X 19508246..19508415 186..355 100 -> Plus
arm_X 19508475..19508984 356..865 100 -> Plus
arm_X 19509057..19509114 866..923 100   Plus

BO10421.complete Sequence

1195 bp (1195 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631746

> BO10421.complete
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGTGGCCGCCACCATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAATTCGGCGAGAAGTTCATATTCTCAGATA
ATCCACCCAAGCAAGTGGCCACCAAGTCGGTGGCGATGCGCCTGGCCAGC
ATTTACCGCATGGGCGGTGTGCCCGCCATTTTCTCTGGACTGGGGCCCCG
ACTCTTCAAGGTAGCGCCCGCATGTGCGATAATGATTTCGTCCTTCGAGT
ACGGCAAGTCATTCTTCTATCACTACAACATCGACCAGCACAATCGGAGC
AATCAGGCGACAAAGGGGCCCGGCTCCGCAAGCTTTCTAGACCAT

BO10421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 1164 CG14209-PE 1..1161 17..1177 5805 100 Plus
Shawn-RD 1164 CG14209-PD 1..1161 17..1177 5805 100 Plus
Shawn-RC 1164 CG14209-PC 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 3255 CG14209-RE 1890..3051 16..1177 5810 100 Plus
Shawn-RD 1618 CG14209-RD 253..1414 16..1177 5810 100 Plus
Shawn-RC 3032 CG14209-RC 1688..2849 16..1177 5810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19614442..19614953 356..867 2560 100 Plus
X 23542271 X 19615181..19615413 945..1177 1165 100 Plus
X 23542271 X 19614213..19614383 186..356 855 100 Plus
X 23542271 X 19613974..19614143 16..185 850 100 Plus
X 23542271 X 19615023..19615105 865..947 415 100 Plus
3R 32079331 3R 7722807..7722912 124..229 215 80.2 Plus
Blast to na_te.dros performed on 2014-11-28 00:13:13 has no hits.

BO10421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:49:57 Download gff for BO10421.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RD 1..1164 17..1180 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:34 Download gff for BO10421.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1592..2764 9..1181 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:12 Download gff for BO10421.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1600..2760 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:49:57 Download gff for BO10421.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1592..2764 9..1181 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:07 Download gff for BO10421.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RC 1689..2849 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:07 Download gff for BO10421.complete
Subject Subject Range Query Range Percent Splice Strand
X 19614213..19614382 186..355 100 -> Plus
X 19613975..19614143 17..185 100 -> Plus
X 19614442..19614951 356..865 100 -> Plus
X 19615024..19615105 866..947 100 -> Plus
X 19615184..19615413 948..1179 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:12 Download gff for BO10421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19508008..19508176 17..185 100 -> Plus
arm_X 19508246..19508415 186..355 100 -> Plus
arm_X 19508475..19508984 356..865 100 -> Plus
arm_X 19509057..19509138 866..947 100 -> Plus
arm_X 19509217..19509446 948..1179 99   Plus

BO10421.pep Sequence

Translation from 16 to 1195

> BO10421.pep
MATREACGQFAAASAAMAAASSQNPSKATMTDPRFRIRPLQQVASACTGA
MVTACFMTPLDVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNP
AAAKPAPRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAY
EQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVS
PVELIRTKMQSQRMTHAEMFGTIRQVVQSQGVLGLWRGLPPTILRDVPFS
GIYWTCYEYLKSSFGVVEPTFSFSFAAGAISGSVAATITTPFDVVKTHEQ
IEFGEKFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSGLGPRLFKVA
PACAIMISSFEYGKSFFYHYNIDQHNRSNQATKGPGSASFLDH

BO10421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-PE 387 CG14209-PE 1..387 1..387 2021 100 Plus
Shawn-PD 387 CG14209-PD 1..387 1..387 2021 100 Plus
Shawn-PC 387 CG14209-PC 1..387 1..387 2021 100 Plus
Shawn-PB 387 CG14209-PB 1..387 1..387 2021 100 Plus
CG2616-PB 449 CG2616-PB 73..432 22..378 1122 60.2 Plus