Clone Sequence Records
BO10429.3prime Sequence
904 bp (845 high quality bases) assembled on 2006-04-19
> BO10429.3prime
ATGGTCTAGAAAGCTTGCGGGTATGCAGAGAGCCAGGGTCTCGCGTTCCT
GCTCGGTGCCGCAGGACACTGGGTGATTCTGGCCCCGGGGATCGATGCCT
GGCTTGAGCATCGTCTGCTGCAGCTCCCAGATGATTTCACACGACTGGAC
GCTCACGGCCAGCTTAAGCACCGACTGATAGTTGAGCGGATTAACCGCAT
AGCTGAGGATACCCCTGGCAATCTGCTCGAACAAATAGTTCCTGTCAAGC
AGAAGGAGCTCCTCTCGTACCTCCATCATACGGTTTTCAAAGTGGCACTG
AATCGCTGCAAATACCAGCTTGTCCAGACCCACCAATAGATCCCGCTTAA
ACTTCACCAGGTAGTGCTCTATGAACACGATCTGGTTGCGATTTAGATGC
GGCAGGCGCACCTTGTCCTGTATTACCTGTTCGCCGATCTGGCTGACAAC
CAGAGAGGCTAATGATCCCGCCGGAGTGGCCCGACGTTCGCTGCACGGGC
GGACGTCCACGAACGGATGAATCTCGTAGCTGCCCACGCCAATGGTGCTG
GCTACACCGCTAAATGATACATGGGAGGCGCGCGAGTGGTTTTTCGGCTG
TTTGGCCATCGACGGAGGCACTTCCATGGCTTTGTGGTCTCTGGCGAATC
CAATGATCTGATAAGCTTTGTAGTGCACATATTTCTTTGCATCGCAGACA
AAATCCTTAATGCGCGAGATCAGCACCTGCAAGGCACACTCATCCTCGCT
GAGATCGTCGTTTAAACCAGAAATTATGTAGTCCAGTATATATTGTGCCG
CCTTATAGATGGGGTCGTCTGGTGCGAAGCTGAGAGCGGTCTGACCCCTC
ATGGCAATGGCTGCATTCAAGGCGTAACAAAGATCACTGTCTAACAATCC
CTCA
BO10429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3345-PA | 2001 | CG3345-RA | 1113..1998 | 904..19 | 4380 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3345-RA | 2417 | CG3345-RA | 1217..2102 | 904..19 | 4400 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 270661..271311 | 669..19 | 3255 | 100 | Minus |
| 2L | 23513712 | 2L | 270372..270606 | 904..670 | 1145 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:14:09 has no hits.
BO10429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:36 Download gff for
BO10429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-PA | 1114..2001 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:29 Download gff for
BO10429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-PA | 1114..2001 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:12 Download gff for
BO10429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 1218..2102 | 19..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:49:02 Download gff for
BO10429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 1218..2102 | 19..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:49:02 Download gff for
BO10429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 270373..270606 | 670..903 | 99 | -> | Minus |
| 2L | 270661..271311 | 19..669 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:12 Download gff for
BO10429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 270373..270606 | 670..903 | 99 | -> | Minus |
| arm_2L | 270661..271311 | 19..669 | 100 | | Minus |
BO10429.5prime Sequence
894 bp (801 high quality bases) assembled on 2006-04-19
> BO10429.5prime
GAAGTTATCAGTCGACATGATCGATATTTTGTCGCTGCCGCGGCGAAATA
AGGTGTCCGGAAACCCGGCCCTGCTAAAGATGATCTCCTACAAGACTGGA
CTACCCATCAACAGTCTACCCGGATGGGAGCTGATCCCTCTTAATTGCAA
GCTGCCAATGCTCAAATGTCCCGGCAATCAGGTCATATTCTCCAAGAACA
AGATCGGACAGGACTTCAAGAGCGGTAAACAGGAGTTTGAGTGTTCCGTT
ACCGAACACATCCCGGAGTACAATCCGCTACACGACTCCAACCTAAAGAC
GTTCTACTCCAATGAGCGTAATCTGAAGCGGTTGAGGGAAAACGGTGAGA
TAACGCAGGACAACGATGTAATATGCAATCTGAAGGACTTCAATCAGCAT
CGCCAGGAGCTGCACAAATCGCAGTTGTACTACATTTTGCAGGCATACAA
GCGGCGCGAGTCGGAGCAATATGATCGAATGCTGATCGCCAACGCGGAGT
CCATCACAAAAAAGGATCACCAGAATCTCGCAGCCCGTCACCAGTGCACT
GAGGAGGTTCTTGCCAGAAAGAAACTACAGGAGCAGGAACGCCACGAAAG
AAAGGTCCATCTGCTGAATATCACATATGAGAAGTTTAAGCGCTTAGAGA
ACCTGGCCACCATGCAGAATATGTTGCTGGAGCACCGCAAGATGCTGACA
AACATGCGTGTAGCTGCCCACATAAGCATGTGCCAGGATTTGATGAGAAA
GCTATTGATCAAACAGAAGAAGCTCTTCCAGTTCAAAAAGGATCGGTTCA
ACAAAAACATGCGAATCCTGAGGAAACAACGGCTGGTAAAGAACACTGAG
CACCAGATTCAGTCGTGGAGGAAGCGACTTGATGAGCGAATTGC
BO10429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3345-PA | 2001 | CG3345-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3345-RA | 2417 | CG3345-RA | 105..982 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 269458..270137 | 215..894 | 3400 | 100 | Plus |
| 2L | 23513712 | 2L | 269192..269389 | 17..214 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:37:37 has no hits.
BO10429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:39:37 Download gff for
BO10429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:53:31 Download gff for
BO10429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:54 Download gff for
BO10429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 105..982 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:09 Download gff for
BO10429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 105..982 | 17..894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:09 Download gff for
BO10429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 269192..269389 | 17..214 | 100 | -> | Plus |
| 2L | 269458..270137 | 215..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:54 Download gff for
BO10429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 269192..269389 | 17..214 | 100 | -> | Plus |
| arm_2L | 269458..270137 | 215..894 | 100 | | Plus |
BO10429.complete Sequence
2032 bp (2032 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631749
> BO10429.complete
GAAGTTATCAGTCGACATGATCGATATTTTGTCGCTGCCGCGGCGAAATA
AGGTGTCCGGAAACCCGGCCCTGCTAAAGATGATCTCCTACAAGACTGGA
CTACCCATCAACAGTCTACCCGGATGGGAGCTGATCCCTCTTAATTGCAA
GCTGCCAATGCTCAAATGTCCCGGCAATCAGGTCATATTCTCCAAGAACA
AGATCGGACAGGACTTCAAGAGCGGTAAACAGGAGTTTGAGTGTTCCGTT
ACCGAACACATCCCGGAGTACAATCCGCTACACGACTCCAACCTAAAGAC
GTTCTACTCCAATGAGCGTAATCTGAAGCGGTTGAGGGAAAACGGTGAGA
TAACGCAGGACAACGATGTAATATGCAATCTGAAGGACTTCAATCAGCAT
CGCCAGGAGCTGCACAAATCGCAGTTGTACTACATTTTGCAGGCATACAA
GCGGCGCGAGTCGGAGCAATATGATCGAATGCTGATCGCCAACGCGGAGT
CCATCACAAAAAAGGATCACCAGAATCTCGCAGCCCGTCACCAGTGCACT
GAGGAGGTTCTTGCCAGAAAGAAACTACAGGAGCAGGAACGCCACGAAAG
AAAGGTCCATCTGCTGAATATCACATATGAGAAGTTTAAGCGCTTAGAGA
ACCTGGCCACCATGCAGAATATGTTGCTGGAGCACCGCAAGATGCTGACA
AACATGCGTGTAGCTGCCCACATAAGCATGTGCCAGGATTTGATGAGAAA
GCTATTGATCAAACAGAAGAAGCTCTTCCAGTTCAAAAAGGATCGGTTCA
ACAAAAACATGCGAATCCTGAGGAAACAACGGCTGGTAAAGAACACTGAG
CACCAGATTCAGTCGTGGAGGAAGCGACTTGATGAGCGAATTGCTAATCA
GCGTAGGATCGAATACCTCCTGCAGGAGGTGGAAAAAGAGCGAGAGGCGT
TTATAGACAGGCACAAGGCTCATTACAGAGAAAAGTGGCAACGGATTCAG
GACGAGATTAAGGAAAGAGCTCAAAAGGCCATCACTGCTCGTCAGCCCAA
AAGAAAGCGCCGCAAGAAGAAGAAGTCGACACTTCAGGAACGCAAGCCAT
CATTCTGCGATGAGTATCAGGCCACCTTTGAGGGATTGTTAGACAGTGAT
CTTTGTTACGCCTTGAATGCAGCCATTGCCATGGAGGGTCAGACCGCTCT
CAGCTTCGCACCAGACGACCCCATCTATAAGGCGGCACAATATATACTGG
ACTACATAATTTCTGGTTTAAACGACGATCTCAGCGAGGATGAGTGTGCC
TTGCAGGTGCTGATCTCGCGCATTAAGGATTTTGTCTGCGATGCAAAGAA
ATATGTGCACTACAAAGCTTATCAGATCATTGGATTCGCCAGAGACCACA
AAGCCATGGAAGTGCCTCCGTCGATGGCCAAACAGCCGAAAAACCACTCG
CGCGCCTCCCATGTATCATTTAGCGGTGTAGCCAGCACCATTGGCGTGGG
CAGCTACGAGATTCATCCGTTCGTGGACGTCCGCCCGTGCAGCGAACGTC
GGGCCACTCCGGCGGGATCATTAGCCTCTCTGGTTGTCAGCCAGATCGGC
GAACAGGTAATACAGGACAAGGTGCGCCTGCCGCATCTAAATCGCAACCA
GATCGTGTTCATAGAGCACTACCTGGTGAAGTTTAAGCGGGATCTATTGG
TGGGTCTGGACAAGCTGGTATTTGCAGCGATTCAGTGCCACTTTGAAAAC
CGTATGATGGAGGTACGAGAGGAGCTCCTTCTGCTTGACAGGAACTATTT
GTTCGAGCAGATTGCCAGGGGTATCCTCAGCTATGCGGTTAATCCGCTCA
ACTATCAGTCGGTGCTTAAGCTGGCCGTGAGCGTCCAGTCGTGTGAAATC
ATCTGGGAGCTGCAGCAGACGATGCTCAAGCCAGGCATCGATCCCCGGGG
CCAGAATCACCCAGTGTCCTGCGGCACCGAGCAGGAACGCGAGACCCTGG
CTCTCTGCATACCCGCAAGCTTTCTAGACCAT
BO10429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3345-RA | 2001 | CG3345-PA | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3345-RA | 2417 | CG3345-RA | 105..2102 | 17..2014 | 9990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 269458..270606 | 215..1363 | 5745 | 100 | Plus |
| 2L | 23513712 | 2L | 270661..271311 | 1364..2014 | 3255 | 100 | Plus |
| 2L | 23513712 | 2L | 269192..269389 | 17..214 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:51:00 has no hits.
BO10429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:57 Download gff for
BO10429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 1..2001 | 17..2015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:01 Download gff for
BO10429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 105..2102 | 17..2014 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:43 Download gff for
BO10429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 105..2102 | 17..2016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:58 Download gff for
BO10429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 105..2102 | 17..2014 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:28 Download gff for
BO10429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3345-RA | 105..2102 | 17..2016 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:28 Download gff for
BO10429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 269192..269389 | 17..214 | 100 | -> | Plus |
| 2L | 269458..270606 | 215..1363 | 100 | -> | Plus |
| 2L | 270661..271311 | 1364..2016 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:43 Download gff for
BO10429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 269192..269389 | 17..214 | 100 | -> | Plus |
| arm_2L | 269458..270606 | 215..1363 | 100 | -> | Plus |
| arm_2L | 270661..271311 | 1364..2016 | 99 | | Plus |
BO10429.pep Sequence
Translation from 16 to 2032
> BO10429.pep
MIDILSLPRRNKVSGNPALLKMISYKTGLPINSLPGWELIPLNCKLPMLK
CPGNQVIFSKNKIGQDFKSGKQEFECSVTEHIPEYNPLHDSNLKTFYSNE
RNLKRLRENGEITQDNDVICNLKDFNQHRQELHKSQLYYILQAYKRRESE
QYDRMLIANAESITKKDHQNLAARHQCTEEVLARKKLQEQERHERKVHLL
NITYEKFKRLENLATMQNMLLEHRKMLTNMRVAAHISMCQDLMRKLLIKQ
KKLFQFKKDRFNKNMRILRKQRLVKNTEHQIQSWRKRLDERIANQRRIEY
LLQEVEKEREAFIDRHKAHYREKWQRIQDEIKERAQKAITARQPKRKRRK
KKKSTLQERKPSFCDEYQATFEGLLDSDLCYALNAAIAMEGQTALSFAPD
DPIYKAAQYILDYIISGLNDDLSEDECALQVLISRIKDFVCDAKKYVHYK
AYQIIGFARDHKAMEVPPSMAKQPKNHSRASHVSFSGVASTIGVGSYEIH
PFVDVRPCSERRATPAGSLASLVVSQIGEQVIQDKVRLPHLNRNQIVFIE
HYLVKFKRDLLVGLDKLVFAAIQCHFENRMMEVREELLLLDRNYLFEQIA
RGILSYAVNPLNYQSVLKLAVSVQSCEIIWELQQTMLKPGIDPRGQNHPV
SCGTEQERETLALCIPASFLDH
BO10429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3345-PA | 666 | CG3345-PA | 1..666 | 1..666 | 3456 | 100 | Plus |
